| Clone Name | rbags38l24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009409.1| Triticum aestivum clone wlm96.pk060.l13:fis, full insert mRNA sequence Length = 1677 Score = 1104 bits (557), Expect = 0.0 Identities = 626/648 (96%), Gaps = 2/648 (0%) Strand = Plus / Minus Query: 1 aatgtgggttgcacagtacatgtcta--acacaaaaaagattatgggacttaaaaatcac 58 ||||||||||| ||||| |||||| ||| ||||||||| ||| |||||||||||||| Sbjct: 1513 aatgtgggttgtgcagtagatgtcttggacaaaaaaaagatgatgcgacttaaaaatcac 1454 Query: 59 ttgaaagacgcaacttcgtcactgaaacgtgcaatgacgtcagcaatgctctctgtggat 118 | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 1453 tggaaagacgcaacttcgtcgttaaaacgtgcaatgacgtcagcaatgctctctgtggat 1394 Query: 119 aggtctgccttgtctcttaccctcaggacgacctttccagactctgcctcttttgcgccc 178 ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1393 aggtctgccctgtctcttaccctcagagagacctttccagactctgcctcttttgcgccg 1334 Query: 179 acgactagaatatagttgaattgggctaactgagcctcccgcaccttcttttgaattgtt 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1333 acgactagaatatagttgaattgggctaactgagcctcccgcaccttcttttgaattgtt 1274 Query: 239 ctatcagtcatgtcaatgtcaacatgaaaaccagctgcgtgtatctgagcatgaacctct 298 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1273 ctatcagtcatgtcaatgtcaacatgaaaaccagctgcacgtatctgagcatgaacctct 1214 Query: 299 tttgcatatgctagtgaattggaagatacacagcaaacaatggcttgtcgggggcttaac 358 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1213 tttgcatatgttagtgaattggcagatacacagcaaacaatggcttgtcgggggcttaac 1154 Query: 359 cacaacggccatttaccattatagtgctccaaaagaatggcaaacatcctttcaactgat 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1153 cacaacggccatttaccattatagtgctccaaaagaatggcaaacatcctttcaactgat 1094 Query: 419 cctagtattgccctgtgtatcattacaggcctctcaagcttggcttcatcctctgcagaa 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 cctagtattgccctgtgtatcattacaggcctctcaagcttggcttcatcctctgcagaa 1034 Query: 479 taagtcaacttgaagcgaagtggcagctgaaaatcgagctgtagagttgcacactgaaat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1033 taagtcaacttgaagcgaagtggcagctgaaaatcgagctgtagagttgcacactgaaat 974 Query: 539 ttcctcttgagggcatcaaacacaccaatatctattttcgggccatagaaagcaccatct 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 973 ttcctcttgagggcatcaaacacaccaatatctattttcgggccatagaaagcaccatct 914 Query: 599 gcttcatttatcttccatggcttcccaaactcattcaatgcttctgtc 646 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 913 gcttcatttatcttccatggcttcccaaactcattcaatgcttctgtc 866
>ref|XM_481363.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2474 Score = 492 bits (248), Expect = e-136 Identities = 485/564 (85%) Strand = Plus / Minus Query: 83 aaacgtgcaatgacgtcagcaatgctctctgtggataggtctgccttgtctcttaccctc 142 ||||||| |||| |||| |||||||| |||||| ||| || || ||||| |||||||| Sbjct: 2260 aaacgtgtgatgatgtcatcaatgctcactgtggctagttcagctttgtcccttaccctg 2201 Query: 143 aggacgacctttccagactctgcctcttttgcgcccacgactagaatatagttgaattgg 202 | | ||||| ||||| |||||| |||| ||| || ||||| ||||| |||||||||||| Sbjct: 2200 acgctgacctgtccagtctctgcttcttgtgcaccaacgacaagaatgtagttgaattgg 2141 Query: 203 gctaactgagcctcccgcaccttcttttgaattgttctatcagtcatgtcaatgtcaaca 262 ||||| ||||||||||| |||||||| || ||||| || || ||| || ||| | ||| Sbjct: 2140 gctaattgagcctcccgtaccttcttctgtattgtcctgtctgtctcatcgatggctaca 2081 Query: 263 tgaaaaccagctgcgtgtatctgagcatgaacctcttttgcatatgctagtgaattggaa 322 |||||||||||| | |||||| |||| | |||| ||| || ||| | | |||||||||| Sbjct: 2080 tgaaaaccagcttcatgtatcctagcacggacctgtttagcgtattccactgaattggaa 2021 Query: 323 gatacacagcaaacaatggcttgtcgggggcttaaccacaacggccatttaccattatag 382 |||| |||||||||||||||| || || || |||||||| |||||||||||||| || Sbjct: 2020 gatatggagcaaacaatggcttggcgaggactcaaccacaagggccatttaccattgtaa 1961 Query: 383 tgctccaaaagaatggcaaacatcctttcaactgatcctagtattgccctgtgtatcatt 442 |||||||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct: 1960 tgctccaaaagaatagcaaacatcctttcaacagaacctaggattgccctgtgaatcatc 1901 Query: 443 acaggcctctcaagcttggcttcatcctctgcagaataagtcaacttgaagcgaagtggc 502 |||||||||||||| |||||||||||||||||||| ||||||| ||||||||| || ||| Sbjct: 1900 acaggcctctcaagtttggcttcatcctctgcagagtaagtcagcttgaagcgtaggggc 1841 Query: 503 agctgaaaatcgagctgtagagttgcacactgaaatttcctcttgagggcatcaaacaca 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1840 agctgaaaatcgagctgtagagttgcacactgaaatttcctcttgagggcatcaaacaca 1781 Query: 563 ccaatatctattttcgggccatagaaagcaccatctgcttcatttatcttccatggcttc 622 |||||||| ||||| || |||||||| |||||||| ||||||| |||| ||||||||| Sbjct: 1780 ccaatatcaatttttggaccatagaaggcaccatcaccttcattgatctgccatggcttt 1721 Query: 623 ccaaactcattcaatgcttctgtc 646 ||||||||||| || ||||||||| Sbjct: 1720 ccaaactcatttaaggcttctgtc 1697
>dbj|AK070378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052L01, full insert sequence Length = 2475 Score = 492 bits (248), Expect = e-136 Identities = 485/564 (85%) Strand = Plus / Minus Query: 83 aaacgtgcaatgacgtcagcaatgctctctgtggataggtctgccttgtctcttaccctc 142 ||||||| |||| |||| |||||||| |||||| ||| || || ||||| |||||||| Sbjct: 2260 aaacgtgtgatgatgtcatcaatgctcactgtggctagttcagctttgtcccttaccctg 2201 Query: 143 aggacgacctttccagactctgcctcttttgcgcccacgactagaatatagttgaattgg 202 | | ||||| ||||| |||||| |||| ||| || ||||| ||||| |||||||||||| Sbjct: 2200 acgctgacctgtccagtctctgcttcttgtgcaccaacgacaagaatgtagttgaattgg 2141 Query: 203 gctaactgagcctcccgcaccttcttttgaattgttctatcagtcatgtcaatgtcaaca 262 ||||| ||||||||||| |||||||| || ||||| || || ||| || ||| | ||| Sbjct: 2140 gctaattgagcctcccgtaccttcttctgtattgtcctgtctgtctcatcgatggctaca 2081 Query: 263 tgaaaaccagctgcgtgtatctgagcatgaacctcttttgcatatgctagtgaattggaa 322 |||||||||||| | |||||| |||| | |||| ||| || ||| | | |||||||||| Sbjct: 2080 tgaaaaccagcttcatgtatcctagcacggacctgtttagcgtattccactgaattggaa 2021 Query: 323 gatacacagcaaacaatggcttgtcgggggcttaaccacaacggccatttaccattatag 382 |||| |||||||||||||||| || || || |||||||| |||||||||||||| || Sbjct: 2020 gatatggagcaaacaatggcttggcgaggactcaaccacaagggccatttaccattgtaa 1961 Query: 383 tgctccaaaagaatggcaaacatcctttcaactgatcctagtattgccctgtgtatcatt 442 |||||||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct: 1960 tgctccaaaagaatagcaaacatcctttcaacagaacctaggattgccctgtgaatcatc 1901 Query: 443 acaggcctctcaagcttggcttcatcctctgcagaataagtcaacttgaagcgaagtggc 502 |||||||||||||| |||||||||||||||||||| ||||||| ||||||||| || ||| Sbjct: 1900 acaggcctctcaagtttggcttcatcctctgcagagtaagtcagcttgaagcgtaggggc 1841 Query: 503 agctgaaaatcgagctgtagagttgcacactgaaatttcctcttgagggcatcaaacaca 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1840 agctgaaaatcgagctgtagagttgcacactgaaatttcctcttgagggcatcaaacaca 1781 Query: 563 ccaatatctattttcgggccatagaaagcaccatctgcttcatttatcttccatggcttc 622 |||||||| ||||| || |||||||| |||||||| ||||||| |||| ||||||||| Sbjct: 1780 ccaatatcaatttttggaccatagaaggcaccatcaccttcattgatctgccatggcttt 1721 Query: 623 ccaaactcattcaatgcttctgtc 646 ||||||||||| || ||||||||| Sbjct: 1720 ccaaactcatttaaggcttctgtc 1697
>emb|Y14368.1|OSTHRRS Oryza sativa mRNA for threonyl-tRNA synthetase, partial Length = 1811 Score = 476 bits (240), Expect = e-131 Identities = 483/564 (85%) Strand = Plus / Minus Query: 83 aaacgtgcaatgacgtcagcaatgctctctgtggataggtctgccttgtctcttaccctc 142 ||||||| |||| |||| |||||||| |||||| ||| || || ||||| |||||||| Sbjct: 1570 aaacgtgtgatgatgtcatcaatgctcactgtggctagttcagctttgtcccttaccctg 1511 Query: 143 aggacgacctttccagactctgcctcttttgcgcccacgactagaatatagttgaattgg 202 | | ||||| ||||| |||||| |||| ||| || ||||| ||||| || ||||||||| Sbjct: 1510 acgctgacctgtccagtctctgcttcttgtgcaccaacgacaagaatgtacttgaattgg 1451 Query: 203 gctaactgagcctcccgcaccttcttttgaattgttctatcagtcatgtcaatgtcaaca 262 ||||| ||||||||||| |||||||| || ||||| || || ||| || ||| | ||| Sbjct: 1450 gctaattgagcctcccgtaccttcttctgtattgtcctgtctgtctcatcgatggctaca 1391 Query: 263 tgaaaaccagctgcgtgtatctgagcatgaacctcttttgcatatgctagtgaattggaa 322 |||||||||||| | |||||| | || | |||| ||| || ||| | | |||||||||| Sbjct: 1390 tgaaaaccagcttcatgtatcctaacacggacctgtttagcgtattccactgaattggaa 1331 Query: 323 gatacacagcaaacaatggcttgtcgggggcttaaccacaacggccatttaccattatag 382 |||| |||||||||||||||| || || || |||||||| |||||||||||||| || Sbjct: 1330 gatatggagcaaacaatggcttggcgaggactcaaccacaagggccatttaccattgtaa 1271 Query: 383 tgctccaaaagaatggcaaacatcctttcaactgatcctagtattgccctgtgtatcatt 442 |||||||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct: 1270 tgctccaaaagaatagcaaacatcctttcaacagaacctaggattgccctgtgaatcatc 1211 Query: 443 acaggcctctcaagcttggcttcatcctctgcagaataagtcaacttgaagcgaagtggc 502 |||||||||||||| |||||||||||||||||||| ||||||| ||||||||| || ||| Sbjct: 1210 acaggcctctcaagtttggcttcatcctctgcagagtaagtcagcttgaagcgtaggggc 1151 Query: 503 agctgaaaatcgagctgtagagttgcacactgaaatttcctcttgagggcatcaaacaca 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1150 agctgaaaatcgagctgtagagttgcacactgaaatttcctcttgagggcatcaaacaca 1091 Query: 563 ccaatatctattttcgggccatagaaagcaccatctgcttcatttatcttccatggcttc 622 |||||||| ||||| || |||||||| |||||||| ||||||| |||| ||||||||| Sbjct: 1090 ccaatatcaatttttggaccatagaaggcaccatcaccttcattgatctgccatggcttt 1031 Query: 623 ccaaactcattcaatgcttctgtc 646 ||||||||||| || ||||||||| Sbjct: 1030 ccaaactcatttaaggcttctgtc 1007
>dbj|AK059095.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C04, full insert sequence Length = 1312 Score = 476 bits (240), Expect = e-131 Identities = 484/564 (85%), Gaps = 1/564 (0%) Strand = Plus / Minus Query: 83 aaacgtgcaatgacgtcagcaatgctctctgtggataggtctgccttgtctcttaccctc 142 ||||||| |||| |||| |||||||| |||||| ||| || || ||||| |||||||| Sbjct: 1140 aaacgtgtgatgatgtcatcaatgctcactgtggctagttcagctttgtcccttaccctg 1081 Query: 143 aggacgacctttccagactctgcctcttttgcgcccacgactagaatatagttgaattgg 202 | | ||||| ||||| |||||| |||| ||| || ||||| ||||| |||||||||||| Sbjct: 1080 acgctgacctgtccagtctctgcttcttgtgcaccaacgacaagaatgtagttgaattgg 1021 Query: 203 gctaactgagcctcccgcaccttcttttgaattgttctatcagtcatgtcaatgtcaaca 262 ||||| ||||||||||| |||||||| || ||||| || || ||| || ||| | ||| Sbjct: 1020 gctaattgagcctcccgtaccttcttctgtattgtcctgtctgtctcatcgatggctaca 961 Query: 263 tgaaaaccagctgcgtgtatctgagcatgaacctcttttgcatatgctagtgaattggaa 322 |||||||||||| | |||||| |||| | |||| ||| || ||| | | ||||||||| Sbjct: 960 tgaaaaccagcttcatgtatcctagcacggacctgtttagcgtattccactgaattgga- 902 Query: 323 gatacacagcaaacaatggcttgtcgggggcttaaccacaacggccatttaccattatag 382 |||| |||||||||||||||| || || || |||||||| |||||||||||||| || Sbjct: 901 gatatggagcaaacaatggcttggcgaggactcaaccacaagggccatttaccattgtaa 842 Query: 383 tgctccaaaagaatggcaaacatcctttcaactgatcctagtattgccctgtgtatcatt 442 |||||||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct: 841 tgctccaaaagaatagcaaacatcctttcaacagaacctaggattgccctgtgaatcatc 782 Query: 443 acaggcctctcaagcttggcttcatcctctgcagaataagtcaacttgaagcgaagtggc 502 |||||||||||||| |||||||||||||||||||| ||||||| ||||||||| || ||| Sbjct: 781 acaggcctctcaagtttggcttcatcctctgcagagtaagtcagcttgaagcgtaggggc 722 Query: 503 agctgaaaatcgagctgtagagttgcacactgaaatttcctcttgagggcatcaaacaca 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 agctgaaaatcgagctgtagagttgcacactgaaatttcctcttgagggcatcaaacaca 662 Query: 563 ccaatatctattttcgggccatagaaagcaccatctgcttcatttatcttccatggcttc 622 |||||||| ||||| || |||||||| |||||||| ||||||| |||| ||||||||| Sbjct: 661 ccaatatcaatttttggaccatagaaggcaccatcaccttcattgatctgccatggcttt 602 Query: 623 ccaaactcattcaatgcttctgtc 646 ||||||||||| || ||||||||| Sbjct: 601 ccaaactcatttaaggcttctgtc 578
>gb|AY103693.1| Zea mays PCO073595 mRNA sequence Length = 2491 Score = 426 bits (215), Expect = e-116 Identities = 425/495 (85%) Strand = Plus / Minus Query: 152 tttccagactctgcctcttttgcgcccacgactagaatatagttgaattgggctaactga 211 ||||||| ||| ||||||| ||| || ||||| ||||| |||||||||||||| | ||| Sbjct: 2190 tttccagtctcggcctcttgtgcacctacgacaagaatgtagttgaattgggccagttga 2131 Query: 212 gcctcccgcaccttcttttgaattgttctatcagtcatgtcaatgtcaacatgaaaacca 271 || ||||| ||||||||||| ||||| || ||| || |||||| ||||||||||||||| Sbjct: 2130 gcttcccgtaccttcttttgtattgtcctgtcactcgcgtcaatatcaacatgaaaacca 2071 Query: 272 gctgcgtgtatctgagcatgaacctcttttgcatatgctagtgaattggaagatacacag 331 ||| | |||| ||| |||||| ||| |||||| | | |||| |||||||| || Sbjct: 2070 gcttcatgtagagtggcaagaacctgtttcgcatattccactgaaccagaagataccgag 2011 Query: 332 caaacaatggcttgtcgggggcttaaccacaacggccatttaccattatagtgctccaaa 391 ||||||||||| || || ||||||| ||| || |||||||||||||| || ||||||||| Sbjct: 2010 caaacaatggcctggcgagggcttagccataagggccatttaccattgtaatgctccaaa 1951 Query: 392 agaatggcaaacatcctttcaactgatcctagtattgccctgtgtatcattacaggcctc 451 |||||||||| |||||||||||| || ||||| ||||||||||||||||| |||||||| Sbjct: 1950 agaatggcaagcatcctttcaaccgaacctaggattgccctgtgtatcatcacaggcctt 1891 Query: 452 tcaagcttggcttcatcctctgcagaataagtcaacttgaagcgaagtggcagctgaaaa 511 |||| |||||||||||||| |||||||||| || |||||| |||| |||||||||||| Sbjct: 1890 tcaattttggcttcatcctcagcagaataagccagcttgaaccgaatgggcagctgaaaa 1831 Query: 512 tcgagctgtagagttgcacactgaaatttcctcttgagggcatcaaacacaccaatatct 571 || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1830 tccagctgtagggttgcacactgaaatttcctcttaagggcatcaaacacaccaatatca 1771 Query: 572 attttcgggccatagaaagcaccatctgcttcatttatcttccatggcttcccaaactca 631 ||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct: 1770 atttttgggccgtagaaagcaccatccccttcattaatcttccatggcttcccaaactca 1711 Query: 632 ttcaatgcttctgtc 646 || || ||||||||| Sbjct: 1710 tttaaagcttctgtc 1696
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 248 bits (125), Expect = 2e-62 Identities = 188/209 (89%) Strand = Plus / Plus Query: 313 tgaattggaagatacacagcaaacaatggcttgtcgggggcttaaccacaacggccattt 372 |||||||||||||| |||||||||||||||| || || || |||||||| |||||||| Sbjct: 11882567 tgaattggaagatatggagcaaacaatggcttggcgaggactcaaccacaagggccattt 11882626 Query: 373 accattatagtgctccaaaagaatggcaaacatcctttcaactgatcctagtattgccct 432 |||||| || |||||||||||||| ||||||||||||||||| || ||||| |||||||| Sbjct: 11882627 accattgtaatgctccaaaagaatagcaaacatcctttcaacagaacctaggattgccct 11882686 Query: 433 gtgtatcattacaggcctctcaagcttggcttcatcctctgcagaataagtcaacttgaa 492 ||| ||||| |||||||||||||| |||||||||||||||||||| ||||||| |||||| Sbjct: 11882687 gtgaatcatcacaggcctctcaagtttggcttcatcctctgcagagtaagtcagcttgaa 11882746 Query: 493 gcgaagtggcagctgaaaatcgagctgta 521 ||| || |||||||||||||||||||||| Sbjct: 11882747 gcgtaggggcagctgaaaatcgagctgta 11882775 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 517 ctgtagagttgcacactgaaatttcctcttgagggcatcaaacacaccaatatctatttt 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 11882849 ctgtagagttgcacactgaaatttcctcttgagggcatcaaacacaccaatatcaatttt 11882908 Query: 577 cgggccatagaaagcaccatctgcttcatttatct 611 || |||||||| |||||||| ||||||| |||| Sbjct: 11882909 tggaccatagaaggcaccatcaccttcattgatct 11882943 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 149 acctttccagactctgcctcttttgcgcccacgactagaatatagttgaattgggctaac 208 |||| ||||| |||||| |||| ||| || ||||| ||||| ||||||||||||||||| Sbjct: 11881148 acctgtccagtctctgcttcttgtgcaccaacgacaagaatgtagttgaattgggctaat 11881207 Query: 209 tgagcctcccgcacct 224 ||||||||||| |||| Sbjct: 11881208 tgagcctcccgtacct 11881223 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 613 ccatggcttcccaaactcattcaatgcttctgtc 646 ||||||||| ||||||||||| || ||||||||| Sbjct: 11883512 ccatggctttccaaactcatttaaggcttctgtc 11883545
>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_A03 Length = 168689 Score = 248 bits (125), Expect = 2e-62 Identities = 188/209 (89%) Strand = Plus / Plus Query: 313 tgaattggaagatacacagcaaacaatggcttgtcgggggcttaaccacaacggccattt 372 |||||||||||||| |||||||||||||||| || || || |||||||| |||||||| Sbjct: 160852 tgaattggaagatatggagcaaacaatggcttggcgaggactcaaccacaagggccattt 160911 Query: 373 accattatagtgctccaaaagaatggcaaacatcctttcaactgatcctagtattgccct 432 |||||| || |||||||||||||| ||||||||||||||||| || ||||| |||||||| Sbjct: 160912 accattgtaatgctccaaaagaatagcaaacatcctttcaacagaacctaggattgccct 160971 Query: 433 gtgtatcattacaggcctctcaagcttggcttcatcctctgcagaataagtcaacttgaa 492 ||| ||||| |||||||||||||| |||||||||||||||||||| ||||||| |||||| Sbjct: 160972 gtgaatcatcacaggcctctcaagtttggcttcatcctctgcagagtaagtcagcttgaa 161031 Query: 493 gcgaagtggcagctgaaaatcgagctgta 521 ||| || |||||||||||||||||||||| Sbjct: 161032 gcgtaggggcagctgaaaatcgagctgta 161060 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 517 ctgtagagttgcacactgaaatttcctcttgagggcatcaaacacaccaatatctatttt 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 161134 ctgtagagttgcacactgaaatttcctcttgagggcatcaaacacaccaatatcaatttt 161193 Query: 577 cgggccatagaaagcaccatctgcttcatttatct 611 || |||||||| |||||||| ||||||| |||| Sbjct: 161194 tggaccatagaaggcaccatcaccttcattgatct 161228 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 149 acctttccagactctgcctcttttgcgcccacgactagaatatagttgaattgggctaac 208 |||| ||||| |||||| |||| ||| || ||||| ||||| ||||||||||||||||| Sbjct: 159433 acctgtccagtctctgcttcttgtgcaccaacgacaagaatgtagttgaattgggctaat 159492 Query: 209 tgagcctcccgcacct 224 ||||||||||| |||| Sbjct: 159493 tgagcctcccgtacct 159508 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 613 ccatggcttcccaaactcattcaatgcttctgtc 646 ||||||||| ||||||||||| || ||||||||| Sbjct: 161797 ccatggctttccaaactcatttaaggcttctgtc 161830
>dbj|AP005487.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1212_C09 Length = 120818 Score = 248 bits (125), Expect = 2e-62 Identities = 188/209 (89%) Strand = Plus / Plus Query: 313 tgaattggaagatacacagcaaacaatggcttgtcgggggcttaaccacaacggccattt 372 |||||||||||||| |||||||||||||||| || || || |||||||| |||||||| Sbjct: 31712 tgaattggaagatatggagcaaacaatggcttggcgaggactcaaccacaagggccattt 31771 Query: 373 accattatagtgctccaaaagaatggcaaacatcctttcaactgatcctagtattgccct 432 |||||| || |||||||||||||| ||||||||||||||||| || ||||| |||||||| Sbjct: 31772 accattgtaatgctccaaaagaatagcaaacatcctttcaacagaacctaggattgccct 31831 Query: 433 gtgtatcattacaggcctctcaagcttggcttcatcctctgcagaataagtcaacttgaa 492 ||| ||||| |||||||||||||| |||||||||||||||||||| ||||||| |||||| Sbjct: 31832 gtgaatcatcacaggcctctcaagtttggcttcatcctctgcagagtaagtcagcttgaa 31891 Query: 493 gcgaagtggcagctgaaaatcgagctgta 521 ||| || |||||||||||||||||||||| Sbjct: 31892 gcgtaggggcagctgaaaatcgagctgta 31920 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 517 ctgtagagttgcacactgaaatttcctcttgagggcatcaaacacaccaatatctatttt 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 31994 ctgtagagttgcacactgaaatttcctcttgagggcatcaaacacaccaatatcaatttt 32053 Query: 577 cgggccatagaaagcaccatctgcttcatttatct 611 || |||||||| |||||||| ||||||| |||| Sbjct: 32054 tggaccatagaaggcaccatcaccttcattgatct 32088 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 149 acctttccagactctgcctcttttgcgcccacgactagaatatagttgaattgggctaac 208 |||| ||||| |||||| |||| ||| || ||||| ||||| ||||||||||||||||| Sbjct: 30293 acctgtccagtctctgcttcttgtgcaccaacgacaagaatgtagttgaattgggctaat 30352 Query: 209 tgagcctcccgcacct 224 ||||||||||| |||| Sbjct: 30353 tgagcctcccgtacct 30368 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 613 ccatggcttcccaaactcattcaatgcttctgtc 646 ||||||||| ||||||||||| || ||||||||| Sbjct: 32657 ccatggctttccaaactcatttaaggcttctgtc 32690
>dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16I03, TM0056, complete sequence Length = 102883 Score = 99.6 bits (50), Expect = 1e-17 Identities = 98/114 (85%) Strand = Plus / Plus Query: 358 ccacaacggccatttaccattatagtgctccaaaagaatggcaaacatcctttcaactga 417 |||||| ||||||||||| || |||||||| ||||||||||||||||| | ||||| || Sbjct: 40461 ccacaagggccatttacccttgtagtgctctaaaagaatggcaaacatgcgctcaacaga 40520 Query: 418 tcctagtattgccctgtgtatcattacaggcctctcaagcttggcttcatcctc 471 |||||| || || ||||| ||||| ||||| ||||||| |||||||||||||| Sbjct: 40521 tcctagaatggctctgtgaatcataacaggtctctcaattttggcttcatcctc 40574
>emb|CT025838.2| Medicago truncatula chromosome 5 clone mth2-124f10, COMPLETE SEQUENCE Length = 113309 Score = 93.7 bits (47), Expect = 7e-16 Identities = 92/107 (85%) Strand = Plus / Plus Query: 365 ggccatttaccattatagtgctccaaaagaatggcaaacatcctttcaactgatcctagt 424 ||||||||||| || |||||||| ||||| ||||||||||| | |||||| |||||||| Sbjct: 1536 ggccatttacccttgtagtgctctaaaagtatggcaaacatgcgttcaacagatcctaga 1595 Query: 425 attgccctgtgtatcattacaggcctctcaagcttggcttcatcctc 471 || || || |||||||| ||||| ||||||| |||||||||||||| Sbjct: 1596 atggctctatgtatcataacaggtctctcaattttggcttcatcctc 1642
>ref|XM_722628.1| Plasmodium yoelii yoelii str. 17XNL threonyl-tRNA synthetase (PY06957) partial mRNA Length = 2793 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 564 caatatctattttcgggccatagaaagcaccatctgcttcattta 608 ||||||||||||| || ||||| |||||||||||| ||||||||| Sbjct: 2107 caatatctattttaggaccataaaaagcaccatctccttcattta 2063
>gb|AE014840.1| Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence Length = 249995 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 566 atatctattttcgggccatagaaagcaccatctgcttcatttatcttcca 615 ||||| ||||| || ||||| |||||||||||| |||||||||| ||||| Sbjct: 3708 atatcaatttttggtccataaaaagcaccatctccttcatttattttcca 3757
>ref|XM_672042.1| Plasmodium berghei strain ANKA threonine--tRNA ligase (PB001300.00.0) partial mRNA Length = 2343 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Minus Query: 564 caatatctattttcgggccatagaaagcaccatctgcttcattta 608 ||||||||||||| || ||||| ||||||||||| ||||||||| Sbjct: 1657 caatatctattttgggtccataaaaagcaccatcaccttcattta 1613
>gb|AC146870.3| Xenopus tropicalis clone CH216-139C6, complete sequence Length = 168665 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 109 ctctgtggataggtctgccttg 130 |||||||||||||||||||||| Sbjct: 53317 ctctgtggataggtctgccttg 53296
>ref|XM_638954.1| Dictyostelium discoideum threonine-tRNA ligase (DDB0231249), partial mRNA Length = 2097 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 565 aatatctattttcgggccatagaaagcaccatc 597 |||||| ||||| || ||||||||||||||||| Sbjct: 1521 aatatcaatttttggaccatagaaagcaccatc 1489
>emb|CR318659.26| Zebrafish DNA sequence from clone CH211-215M5 in linkage group 17, complete sequence Length = 167230 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 399 caaacatcctttcaactgatc 419 ||||||||||||||||||||| Sbjct: 165187 caaacatcctttcaactgatc 165207
>emb|X55026.1|MTPACG Podospora anserina complete mitochondrial genome Length = 100314 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 aataagtcaacttgaagcgaa 497 ||||||||||||||||||||| Sbjct: 94745 aataagtcaacttgaagcgaa 94765
>emb|X13164.1|MIPAND1B Podospora anserina mitochondrial ND1 gene exons 3 and 4 Length = 5803 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 aataagtcaacttgaagcgaa 497 ||||||||||||||||||||| Sbjct: 77 aataagtcaacttgaagcgaa 97
>gb|AC098964.4| Homo sapiens chromosome 8 clone RP11-141M14 map 8p21-p11, complete sequence Length = 151646 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 atcctctgcagaataagtcaa 486 ||||||||||||||||||||| Sbjct: 85930 atcctctgcagaataagtcaa 85910
>gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-273G13, RP1-103E7 map 8p21-p11, complete sequence Length = 301232 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 atcctctgcagaataagtcaa 486 ||||||||||||||||||||| Sbjct: 293381 atcctctgcagaataagtcaa 293361
>gb|AC103840.2| Homo sapiens chromosome 8, clone RP11-317N12, complete sequence Length = 172361 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 atcctctgcagaataagtcaa 486 ||||||||||||||||||||| Sbjct: 28549 atcctctgcagaataagtcaa 28529
>gb|AC117070.2| Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence Length = 136240 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 565 aatatctattttcgggccatagaaagcaccatc 597 |||||| ||||| || ||||||||||||||||| Sbjct: 40440 aatatcaatttttggaccatagaaagcaccatc 40408
>emb|X03127.1|MIPASENE Podospora anserina mitochondrial epsilon-sen DNA Length = 7755 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 aataagtcaacttgaagcgaa 497 ||||||||||||||||||||| Sbjct: 6518 aataagtcaacttgaagcgaa 6538
>gb|AY663110.1| Fragaria x ananassa aldo-keto reductase mRNA, complete cds Length = 960 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 609 tcttccatggcttcccaaac 628 |||||||||||||||||||| Sbjct: 461 tcttccatggcttcccaaac 442
>gb|AC163492.3| Mus musculus chromosome 18, clone RP23-411L20, complete sequence Length = 201822 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 cccaaactcattcaatgctt 641 |||||||||||||||||||| Sbjct: 164873 cccaaactcattcaatgctt 164892
>gb|AY382665.1| Hydrangea macrophylla reductase 2 mRNA, complete cds Length = 1289 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 609 tcttccatggcttcccaaac 628 |||||||||||||||||||| Sbjct: 455 tcttccatggcttcccaaac 436
>gb|AY382664.1| Hydrangea macrophylla reductase 2 and reductase 1 genes, complete cds Length = 7423 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 609 tcttccatggcttcccaaac 628 |||||||||||||||||||| Sbjct: 794 tcttccatggcttcccaaac 775
>gb|AC101882.14| Mus musculus chromosome 10, clone RP23-394M6, complete sequence Length = 209838 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ttaaaaatcacttgaaagac 67 |||||||||||||||||||| Sbjct: 106796 ttaaaaatcacttgaaagac 106815
>gb|AC144759.11| Medicago truncatula clone mth2-15b21, complete sequence Length = 124666 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 acttaaaaatcacttgaaag 65 |||||||||||||||||||| Sbjct: 81728 acttaaaaatcacttgaaag 81747
>gb|AC123596.13| Medicago truncatula clone mth1-17n5, complete sequence Length = 120055 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 acttaaaaatcacttgaaag 65 |||||||||||||||||||| Sbjct: 79068 acttaaaaatcacttgaaag 79087
>emb|BX677665.17| Zebrafish DNA sequence from clone DKEY-25M3 in linkage group 12, complete sequence Length = 136144 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 caaacatcctttcaactgat 418 |||||||||||||||||||| Sbjct: 119241 caaacatcctttcaactgat 119222
>emb|BX950873.9| Zebrafish DNA sequence from clone CH211-119G22 in linkage group 11, complete sequence Length = 154950 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 449 ctctcaagcttggcttcatcctct 472 |||||||||||| ||||||||||| Sbjct: 48612 ctctcaagcttgtcttcatcctct 48589
>emb|BX465211.8| Zebrafish DNA sequence from clone CH211-142D23 in linkage group 17, complete sequence Length = 173690 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cctcttgagggcatcaaaca 560 |||||||||||||||||||| Sbjct: 106781 cctcttgagggcatcaaaca 106762
>gb|AC068629.35| Homo sapiens 12 BAC RP11-162A11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191117 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 catcctttcaactgatccta 422 |||||||||||||||||||| Sbjct: 42886 catcctttcaactgatccta 42905
>gb|AC002309.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 63e9 In IGLC Region, complete sequence Length = 36384 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 tcttttgaattgttctatcagtca 248 |||||||||||||| ||||||||| Sbjct: 9746 tcttttgaattgttttatcagtca 9769
>dbj|AK081970.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130090G22 product:unclassifiable, full insert sequence Length = 2687 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 acctttccagactctgcctc 168 |||||||||||||||||||| Sbjct: 2661 acctttccagactctgcctc 2680
>emb|AL112057.1|CNS019SX Botrytis cinerea strain T4 cDNA library Length = 780 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 gggccatagaaagcaccatc 597 |||||||||||||||||||| Sbjct: 93 gggccatagaaagcaccatc 74
>gb|AC156798.2| Mus musculus BAC clone RP23-378B3 from chromosome 12, complete sequence Length = 220547 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 cacaccaatatctattttcg 578 |||||||||||||||||||| Sbjct: 131770 cacaccaatatctattttcg 131751
>gb|AC114488.3| Homo sapiens chromosome 1 clone RP11-73M7, complete sequence Length = 184854 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 catcctttcaactgatccta 422 |||||||||||||||||||| Sbjct: 70897 catcctttcaactgatccta 70916
>emb|CT025839.2| Medicago truncatula chromosome 5 clone mth4-19c21, COMPLETE SEQUENCE Length = 210117 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 acttaaaaatcacttgaaag 65 |||||||||||||||||||| Sbjct: 81732 acttaaaaatcacttgaaag 81751
>gb|AF039182.1|AF039182 Fragaria x ananassa probable aldo-keto reductase superfamily member mRNA, complete cds Length = 1336 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 609 tcttccatggcttcccaaac 628 |||||||||||||||||||| Sbjct: 584 tcttccatggcttcccaaac 565
>gb|AC134604.5| Mus musculus BAC clone RP23-296I5 from 12, complete sequence Length = 203284 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 acctttccagactctgcctc 168 |||||||||||||||||||| Sbjct: 83485 acctttccagactctgcctc 83504
>ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@) on chromosome 22 Length = 909203 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 tcttttgaattgttctatcagtca 248 |||||||||||||| ||||||||| Sbjct: 525894 tcttttgaattgttttatcagtca 525917
>dbj|D87013.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:63E9 Length = 36393 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 tcttttgaattgttctatcagtca 248 |||||||||||||| ||||||||| Sbjct: 9749 tcttttgaattgttttatcagtca 9772 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,054,402 Number of Sequences: 3902068 Number of extensions: 6054402 Number of successful extensions: 115805 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115655 Number of HSP's gapped (non-prelim): 144 length of query: 647 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 624 effective length of database: 17,143,297,704 effective search space: 10697417767296 effective search space used: 10697417767296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)