ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2g05 |
|---|---|
| Clone Library Name | barley_pub |
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 68.2 bits (165), Expect = 2e-11 Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 8/148 (5%) Frame = -2 Query: 618 RTPGNFRGLAFVTFESDEVALKSLEL-DGYKIGNRFMRVERCRITASSKRQK-----KTE 457 R RG AFVT S E A +++ L DG ++G R ++V + +R+ ++ Sbjct: 149 RVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRST 208 Query: 456 FQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSS-RIASIRFAIDKRTGDSRGFCHVDF 280 +Q + P YV NLSW ++ + LRD F S + D+ +G SRGF + F Sbjct: 209 YQGFVDSPH---KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITF 265 Query: 279 EDDESLEKAVG-MNQSELRGRPVKIAYA 199 E++ A+ MN+ EL GRP+++ A Sbjct: 266 SSAEAMNSALDTMNEVELEGRPLRLNVA 293
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 66.2 bits (160), Expect = 8e-11 Identities = 36/82 (43%), Positives = 53/82 (64%) Frame = -2 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDES 265 P +P +A+VGNLS++++E DL DFF + SIR ID T SRGF +V+FE ++ Sbjct: 89 PSEPP--FTAHVGNLSFDLTENDLGDFFGEG-VTSIRLVIDPLTERSRGFGYVEFETADT 145 Query: 264 LEKAVGMNQSELRGRPVKIAYA 199 L A+ ++ +L GRPV+I A Sbjct: 146 LSAALALSGEDLMGRPVRITVA 167
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 62.8 bits (151), Expect = 8e-10 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 3/144 (2%) Frame = -2 Query: 624 ASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSD 445 + R RG+A+V F V + S+ L G R + V + +++ + ++ Sbjct: 186 SDRNSRRSRGIAYVEF----VDVSSVRLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANN 241 Query: 444 PEKPD-GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 +K G + YVG+L +NI+E LR F+ RI SI+ +D TG S+G+ + F D Sbjct: 242 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301 Query: 270 ESLEKAV-GMNQSELRGRPVKIAY 202 E +KA+ +N EL GRP+K+ + Sbjct: 302 ECAKKALEQLNGFELAGRPMKVGH 325 Score = 41.2 bits (95), Expect = 0.003 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Frame = -2 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 PE+ D + + L+ I +DL +FF + ++ +R D+ + SRG +V+F D Sbjct: 147 PEERDA-RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVS 205 Query: 267 SLEKAVGMNQSELRGRP--VKIAYAIINRA 184 S+ A+G+ + G P V+ + A NRA Sbjct: 206 SVRLAIGLTGQRVLGVPIIVQASQAEKNRA 235
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 61.6 bits (148), Expect = 2e-09 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 3/144 (2%) Frame = -2 Query: 621 SRTPGNFRGLAFVTFESDEVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSD 445 +R RG FVT + E A K++EL +GY + R + V + S +R + +F+ Sbjct: 89 NRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPS 148 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 YVGNL W++ L F + ++ S R D+ TG SRGF V + Sbjct: 149 -------CRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSES 201 Query: 267 SLEKAV-GMNQSELRGRPVKIAYA 199 + A+ ++ L GR V++ A Sbjct: 202 EVNDAIAALDGQTLDGRAVRVNVA 225
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 61.2 bits (147), Expect = 2e-09 Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 6/143 (4%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYK-IGNRFMRVERCRITASSKR----QKKTEFQSD 445 G +G +V FE+ E A ++ +G K I R + ++ ++ + Q+ F Sbjct: 301 GRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQ 360 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 +P + +VGNLS+N +E DL F I SIR D ++G +GF +V F D + Sbjct: 361 LSEPSD--TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418 Query: 267 SLEKAVGMNQSELRGRPVKIAYA 199 S +K V MN + GRP ++ ++ Sbjct: 419 SAKKCVEMNGHFIAGRPCRLDFS 441 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 2/101 (1%) Frame = -2 Query: 504 ERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFA 328 E+ R + ++ + + + + +VG LSWN+ ++ L ++F + I R Sbjct: 236 EKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVI 295 Query: 327 IDKRTGDSRGFCHVDFEDDESLEKAVGMN-QSELRGRPVKI 208 +D ++G S+G+ +VDFE E+ + AV N E+ GR V + Sbjct: 296 MDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 61.2 bits (147), Expect = 2e-09 Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 3/144 (2%) Frame = -2 Query: 624 ASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSD 445 + R +G+A+V F V + S+ L G R + V + +++ + ++ Sbjct: 186 SDRNSRRSKGIAYVEF----VDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANN 241 Query: 444 PEKPD-GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 +K G + YVG+L +NI+E LR F+ RI SI+ +D TG S+G+ + F D Sbjct: 242 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301 Query: 270 ESLEKAV-GMNQSELRGRPVKIAY 202 E +KA+ +N EL GRP+K+ + Sbjct: 302 ECAKKALEQLNGFELAGRPMKVGH 325 Score = 39.7 bits (91), Expect = 0.008 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Frame = -2 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 PE+ D + + L+ I +DL +FF + ++ +R D+ + S+G +V+F D Sbjct: 147 PEERDA-RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205 Query: 267 SLEKAVGMNQSELRGRP--VKIAYAIINRA 184 S+ A+G+ + G P V+ + A NRA Sbjct: 206 SVPLAIGLTGQRVLGVPIIVQASQAEKNRA 235
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 60.8 bits (146), Expect = 3e-09 Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 1/133 (0%) Frame = -2 Query: 591 AFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAY 412 A+V F+ + A ++L+ +G +I + F R+ + +S R K+ S + Sbjct: 246 AYVVFKEESAATQALKRNGAQIADGF-RIRVDLASETSSRDKR--------------SVF 290 Query: 411 VGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQS 235 VGNL + + E + + F I ++R DK TG +GF +V FE+ +S+ A+ +N S Sbjct: 291 VGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNS 350 Query: 234 ELRGRPVKIAYAI 196 EL GR +++ ++ Sbjct: 351 ELMGRKLRVMRSV 363 Score = 31.6 bits (70), Expect = 2.1 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = -2 Query: 537 GYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFK 358 G K+ +R + ++ T S+R KK + + E+ + +VGNL ++K L+ FFK Sbjct: 149 GVKVADRKI-LDDTEDTVVSQR-KKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFK 206 Query: 357 S-SRIASIRF 331 +I S+RF Sbjct: 207 EYGQIESVRF 216
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 60.1 bits (144), Expect = 5e-09 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Frame = -2 Query: 591 AFVTFESDEVALKSLELDGYKIGNRF-MRVERCRITASSKRQKKTEFQSDPEKPDGCLSA 415 A+V F+ + A K+L+ +G +I F +RV+ TAS ++ S Sbjct: 244 AYVVFKEERAAAKALQRNGAQIAEGFRIRVDLASETASRDKR----------------SV 287 Query: 414 YVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 238 +VGNL + + E L + F I ++R + TG RGF +V FE+ +++ A+ +N Sbjct: 288 FVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNN 347 Query: 237 SELRGRPVKIAYAI 196 SEL GR +++ ++ Sbjct: 348 SELMGRKLRVMRSV 361
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 59.3 bits (142), Expect = 9e-09 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Frame = -2 Query: 591 AFVTFESDEVALKSLELDGYKIGNRF-MRVERCRITASSKRQKKTEFQSDPEKPDGCLSA 415 A+V F+ + A K+L+ +G +I F +RV+ TAS ++ S Sbjct: 250 AYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKR----------------SV 293 Query: 414 YVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 238 +VGNL + I + L + F I ++R + TG RGF +V FE+ +++ A+ +N Sbjct: 294 FVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNN 353 Query: 237 SELRGRPVKIAYAI 196 SEL GR +++ ++ Sbjct: 354 SELMGRKLRVMRSV 367
>GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)| Length = 447 Score = 58.2 bits (139), Expect = 2e-08 Identities = 38/134 (28%), Positives = 63/134 (47%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G RG A + ES++ K+LE +G R++ V K + +S P D Sbjct: 157 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVND 216 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 G + + L ++ +EKD+ DFF I I F +D R G +V FE+ E +A+ Sbjct: 217 GVVR--LRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 274 Query: 249 GMNQSELRGRPVKI 208 ++ E+ R ++I Sbjct: 275 LKHREEIGNRYIEI 288 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Frame = -2 Query: 441 EKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIAS----IRFAIDKRTGDSRGFCHVDFED 274 E+ D L W+ + +D+ +FF RI + I F ++ R G RG ++ E Sbjct: 111 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN-RDGKRRGDALIEMES 169 Query: 273 DESLEKAVGMNQSELRGRPVKIAYAIIN 190 ++ ++KA+ ++ + R V++ Y I N Sbjct: 170 EQDVQKALEKHRMYMGQRYVEV-YEINN 196
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 57.8 bits (138), Expect = 3e-08 Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 5/104 (4%) Frame = -2 Query: 480 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 304 S R++ T +++P+ P+ CL + LS +E+DLR+ F + ++ + D+RTG S Sbjct: 101 SNRRRHTGSRANPD-PNTCLGVF--GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRS 157 Query: 303 RGFCHVDFE--DD--ESLEKAVGMNQSELRGRPVKIAYAIINRA 184 RGF V FE DD E++E+A GM EL GR +++ Y+I RA Sbjct: 158 RGFAFVYFERIDDSKEAMERANGM---ELDGRRIRVDYSITKRA 198
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 57.8 bits (138), Expect = 3e-08 Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 5/104 (4%) Frame = -2 Query: 480 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 304 S R++ T +++P+ P+ CL + LS +E+DLR+ F + ++ + D+RTG S Sbjct: 103 SNRRRHTGSRANPD-PNTCLGVF--GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRS 159 Query: 303 RGFCHVDFE--DD--ESLEKAVGMNQSELRGRPVKIAYAIINRA 184 RGF V FE DD E++E+A GM EL GR +++ Y+I RA Sbjct: 160 RGFAFVYFERIDDSKEAMERANGM---ELDGRRIRVDYSITKRA 200
>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)| Length = 479 Score = 56.6 bits (135), Expect = 6e-08 Identities = 37/134 (27%), Positives = 62/134 (46%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G RG A + ES++ K+LE +G R++ V K + + P D Sbjct: 189 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSD 248 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 G + + L ++ +EKD+ DFF I I F +D R G +V FE+ E +A+ Sbjct: 249 GVVR--LRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 306 Query: 249 GMNQSELRGRPVKI 208 ++ E+ R ++I Sbjct: 307 LKHREEIGNRYIEI 320
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 56.2 bits (134), Expect = 8e-08 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 238 +VG LSW+ S+KDL+D+F K + +D TG SRGF + F+D S+EK + + Sbjct: 78 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKE 137 Query: 237 SELRGRPV 214 L GR + Sbjct: 138 HRLDGRVI 145
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 56.2 bits (134), Expect = 8e-08 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Frame = -2 Query: 504 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF-KSSRI 346 E +I AS + + S P + + ++G LSW+ ++KDL+D+F K + Sbjct: 64 EGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEV 123 Query: 345 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPV 214 +D TG SRGF V F++ ES++K + + +L G+ + Sbjct: 124 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 167
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 56.2 bits (134), Expect = 8e-08 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Frame = -2 Query: 504 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF-KSSRI 346 E +I AS + + S P + + ++G LSW+ ++KDL+D+F K + Sbjct: 64 EGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEV 123 Query: 345 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPV 214 +D TG SRGF V F++ ES++K + + +L G+ + Sbjct: 124 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 167
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 56.2 bits (134), Expect = 8e-08 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG F+T+ + ++ + +KI R + KR + P Sbjct: 72 RGFGFITYSHSSMIDEAQKSRPHKIDGRVVE---------PKRAVPRQDIDSPNAGATVK 122 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 +VG L + E+ +RD+F+ I I IDK TG RGF V+F+D + ++K V Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182 Query: 243 NQSELRGRPVKIAYAI 196 Q +L G+ V + A+ Sbjct: 183 KQHQLNGKMVDVKKAL 198
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 56.2 bits (134), Expect = 8e-08 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Frame = -2 Query: 621 SRTPGNFRGLAFVTFESDEVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSD 445 +R RG FVT + E A K++E+ + Y + R + V + +++R ++ E Sbjct: 170 NRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNK-----AARRGERPE--RP 222 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 P + YVGN+ W I + L F + ++ S R D+ TG SRGF V + Sbjct: 223 PRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEA 282 Query: 267 SLEKAV-GMNQSELRGRPVKIAYA 199 + A+ ++ L GR +++ A Sbjct: 283 EMSDAIANLDGQSLDGRTIRVNVA 306 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = -2 Query: 471 QKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKR-TGDSRGF 295 +++ EFQ PE +VGNL +++ + L F+ + + I I R T SRGF Sbjct: 124 EEEEEFQEPPEDA----KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGF 179 Query: 294 CHVDFEDDESLEKAVGM-NQSELRGR 220 V E EKAV M N+ ++ GR Sbjct: 180 GFVTMSTVEEAEKAVEMYNRYDVNGR 205
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 56.2 bits (134), Expect = 8e-08 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 6/143 (4%) Frame = -2 Query: 609 GNFRGLAFVTFES-DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G RG FVT S +EV + +GY++ R +RV ++++ + F+ Sbjct: 125 GRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNS---GPPPEKRENSSFRGGSRGG 181 Query: 432 ---DGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDES 265 D YVGNL+W + + L F + ++ + D+ +G SRGF V + E Sbjct: 182 GSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 241 Query: 264 LEKAV-GMNQSELRGRPVKIAYA 199 + A+ ++ +L GR ++++ A Sbjct: 242 VNNAIESLDGVDLNGRAIRVSPA 264
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 55.8 bits (133), Expect = 1e-07 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 RG +V FE+ A K++ E+ G +I R + + + + +F P +P Sbjct: 209 RGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDT 268 Query: 423 LSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG 247 L ++GNLS+N + + F K + S+R T +GF +V F + E +KA+ Sbjct: 269 L--FLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326 Query: 246 MNQSE-LRGRPVKIAYA 199 Q E + RPV++ ++ Sbjct: 327 ALQGEYIDNRPVRLDFS 343 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Frame = -2 Query: 483 SSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGD 307 SS +++K E +P + +VG LSW+I ++ L+ F+ + R ++ T Sbjct: 154 SSNKKQKNEETEEPA------TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDR 207 Query: 306 SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 214 SRG+ +VDFE+ EKA+ M E+ GRP+ Sbjct: 208 SRGYGYVDFENKSYAEKAIQEMQGKEIDGRPI 239
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 55.5 bits (132), Expect = 1e-07 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 3/141 (2%) Frame = -2 Query: 621 SRTPGNFRGLAFVTFESDEVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSD 445 +R RG FVT + E A K++EL Y + R + V + S + FQ Sbjct: 131 NRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT 190 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 YVGN+ W+I + L F + ++ S R D+ +G SRGF V + Sbjct: 191 -------YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEA 243 Query: 267 SLEKAV-GMNQSELRGRPVKI 208 + +A+ ++ L GR +++ Sbjct: 244 EMSEAIANLDGQTLDGRTIRV 264
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 55.5 bits (132), Expect = 1e-07 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Frame = -2 Query: 504 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF-KSSRI 346 E +I AS + + S P + + ++G LSW+ ++KDL+D+F K + Sbjct: 62 EGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDV 121 Query: 345 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPV 214 +D TG SRGF V F++ ES++K + + +L G+ + Sbjct: 122 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 165
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 55.1 bits (131), Expect = 2e-07 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 15/152 (9%) Frame = -2 Query: 609 GNFRGLAFVTFES-DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G RG FVT S +EV + +GY++ R +RV S +K E S E Sbjct: 125 GRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN------SGPPPEKRENSSFRENS 178 Query: 432 ------------DGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 292 D YVGNL+W + + L F + ++ + D+ +G SRGF Sbjct: 179 SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFG 238 Query: 291 HVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 199 V + E + A+ ++ +L GR ++++ A Sbjct: 239 FVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 55.1 bits (131), Expect = 2e-07 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 19/156 (12%) Frame = -2 Query: 609 GNFRGLAFVTFES-DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G RG FVT S EV + + +GY++ R +RV +++ F P Sbjct: 129 GRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN----AGPPPPKREDGFSRGPRSS 184 Query: 432 DGCLSA----------------YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 304 G + YVGNLSW + + L F + ++ R D+ +G S Sbjct: 185 FGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRS 244 Query: 303 RGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 199 +GF V ++ + ++ A+ ++ ++L GR ++++ A Sbjct: 245 KGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 55.1 bits (131), Expect = 2e-07 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 238 +VG LSW+ S+KDL+D+F K + +D TG SRGF + F+D S+EK + + Sbjct: 71 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 130 Query: 237 SELRGRPV 214 L GR + Sbjct: 131 HRLDGRVI 138
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/74 (36%), Positives = 46/74 (62%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 241 +AYVGNL +N + D+ FK I S+R DK T +GFC+V+F++ +SL++A+ + Sbjct: 42 TAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYD 101 Query: 240 QSELRGRPVKIAYA 199 + L R +++ A Sbjct: 102 GALLGDRSLRVDIA 115
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/74 (36%), Positives = 46/74 (62%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 241 +AYVGNL +N + D+ FK I S+R DK T +GFC+V+F++ +SL++A+ + Sbjct: 42 TAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYD 101 Query: 240 QSELRGRPVKIAYA 199 + L R +++ A Sbjct: 102 GALLGDRSLRVDIA 115 Score = 30.8 bits (68), Expect = 3.5 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 5/107 (4%) Frame = -2 Query: 603 FRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD-- 430 F+G +V F+ + ++L DG +G+R +RV+ A ++Q K F PD Sbjct: 80 FKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD----IAEGRKQDKGGFGFRKGGPDDR 135 Query: 429 GCLSAYVGNLSWNISE---KDLRDFFKSSRIASIRFAIDKRTGDSRG 298 G S+ W+ + RD F R S D+RTG G Sbjct: 136 GMGSSRESRGGWDSRDDFNSGFRDDFLGGRGGS--RPGDRRTGPPMG 180
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 3/144 (2%) Frame = -2 Query: 621 SRTPGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSD 445 +R RG FVT S + A ++E + Y + R + V + S + Sbjct: 184 NRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA------- 236 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 P + YVGNL W++ L F + ++ R D+ TG SRGF V D + Sbjct: 237 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 296 Query: 267 SLEKAV-GMNQSELRGRPVKIAYA 199 L +A+ ++ L GR +++ A Sbjct: 297 ELNEAISALDGQNLEGRAIRVNVA 320
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 53.9 bits (128), Expect = 4e-07 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG F+T+ + + +K+ R + +R +TE PE Sbjct: 58 RGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRA--------VPRTEI-GRPEAGATVK 108 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 +VG + + E DLRD+FK + S +DK T RGF V+F+D + ++K Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLS 168 Query: 243 NQSELRGRPVKIAYAI 196 ++RG+ + + A+ Sbjct: 169 RNHQIRGKHIDVKKAL 184
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 52.8 bits (125), Expect = 9e-07 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = -2 Query: 483 SSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGD 307 SS Q Q D ++ +VG LSW +EK+LRD F K I SI D +TG Sbjct: 41 SSDNQSAASGQRDDDR-----KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGR 95 Query: 306 SRGFCHVDFEDDESLEKAVGMNQSELRGRPV 214 SRGF + F + E+++K ++ + + V Sbjct: 96 SRGFAFIVFTNTEAIDKVSAADEHIINSKKV 126 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 2/139 (1%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G RG AF+ F + E K D + I ++ + DP+K Sbjct: 94 GRSRGFAFIVFTNTEAIDKVSAADEHIINSK---------------------KVDPKKAK 132 Query: 429 GCLSA-YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 256 +VG L+ IS+++++ +F + I + DK+ +GFC + F+ ++ + Sbjct: 133 ARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTD 192 Query: 255 AVGMNQSELRGRPVKIAYA 199 + + ++ G+ V + A Sbjct: 193 LLKTPKQKIAGKEVDVKRA 211
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 52.4 bits (124), Expect = 1e-06 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 22/159 (13%) Frame = -2 Query: 609 GNFRGLAFVTFES-DEVALKSLELDGYKIGNRFMRVERCRITASSK-------------- 475 G RG FVT + +EV + +GY+I R +RV A + Sbjct: 125 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSY 184 Query: 474 ---RQKKTEFQS--DPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRT 313 R + F D YVGNLSW + + L++ F + + + D+ + Sbjct: 185 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 244 Query: 312 GDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 199 G SRGF V + + + A+ +N +L GR ++++ A Sbjct: 245 GRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 52.4 bits (124), Expect = 1e-06 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 10/151 (6%) Frame = -2 Query: 621 SRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSD- 445 S T + G FV FE+ + A +L L+ + N + + + KR + + S Sbjct: 121 STTQLHHAGYCFVEFETQKDAKFALSLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGA 180 Query: 444 ------PEKPDGCLSAYVGNLSWNISEKDLRDFFKS--SRIASIRFAIDKRTGDSRGFCH 289 P P+ S +VG+LS +E DL F++ + ++R D TG SR F Sbjct: 181 TLQSSIPSTPE--FSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGF 238 Query: 288 VDFEDDESLEKA-VGMNQSELRGRPVKIAYA 199 V F D++ +A + M+ +GR +++AYA Sbjct: 239 VRFGDEDERRRALIEMSGKWFQGRALRVAYA 269
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 52.4 bits (124), Expect = 1e-06 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 4/126 (3%) Frame = -2 Query: 573 SDEVALKSLELDGYKIGNRF--MRVERCRITASSKR-QKKTEFQSDPEKPDGCLSAYVGN 403 SD+ AL + E + ++ R M E ++ A ++ +TE + ++ S YVGN Sbjct: 2 SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGN 61 Query: 402 LSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELR 226 + ++++ ++L+ F S + + DK TG +GF +++F + + A+ +N S L Sbjct: 62 VDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLH 121 Query: 225 GRPVKI 208 RP+K+ Sbjct: 122 ERPLKV 127
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 52.0 bits (123), Expect = 1e-06 Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 RG FV FE+ E A ++++ ++G + +R + V + S+R+++ E+ + K Sbjct: 138 RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK----SRRERELEYGA---KVMEF 190 Query: 423 LSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG 247 + Y+ N ++ +K LR+ F + S++ +D TG SRGF V++ + E +KAV Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVS 249 Query: 246 -MNQSELRGRPVKIAYA 199 MN E+ GR + + A Sbjct: 250 EMNGKEVNGRMIYVGRA 266 Score = 41.6 bits (96), Expect = 0.002 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G RG FV + + E A K++ E++G ++ R + V R + + + K +F+ ++ Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQER 287 Query: 432 DGC---LSAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDES 265 ++ YV NL I + LR +F I S + + G S+GF V F E Sbjct: 288 INRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEE 345 Query: 264 LEKAV-GMNQSELRGRPVKIAYA 199 KAV MN + +P+ +A A Sbjct: 346 ATKAVTEMNGRIVSTKPLYVALA 368
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 51.6 bits (122), Expect = 2e-06 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 22/159 (13%) Frame = -2 Query: 609 GNFRGLAFVTFES-DEVALKSLELDGYKIGNRFMRVERCRITASSK-------------- 475 G RG FVT + +EV + +GY+I R +RV A + Sbjct: 126 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSY 185 Query: 474 ---RQKKTEFQS--DPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRT 313 R + F D YVGNLSW + + L++ F + + + D+ + Sbjct: 186 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 245 Query: 312 GDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 199 G SRGF V + + + A+ +N +L GR ++++ A Sbjct: 246 GRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 51.6 bits (122), Expect = 2e-06 Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 1/137 (0%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G+ + +V F S E K+L+L+G K+ +++E+ + S K KK Sbjct: 318 GSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKER--------- 368 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 + +V NL + ++E ++++ F+++ +R ++K G S+G +++F+ + EKA+ Sbjct: 369 DARTLFVKNLPYRVTEDEMKNVFENA--LEVRLVLNKE-GSSKGMAYIEFKTEAEAEKAL 425 Query: 249 GMNQ-SELRGRPVKIAY 202 Q +E+ GR + I Y Sbjct: 426 EEKQGTEVDGRAMVIDY 442 Score = 46.6 bits (109), Expect = 6e-05 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 1/138 (0%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G +G AFV F + E A ++L N + R+ SS +K + Sbjct: 495 GRPKGYAFVEFPTAEDAKEALN----SCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQ 550 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA- 253 + +V LS + +E+ LR+ F+ S S R D+ TG S+GF VDF E + A Sbjct: 551 QSKTLFVRGLSEDTTEETLRESFEGS--ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 608 Query: 252 VGMNQSELRGRPVKIAYA 199 M E+ G V + +A Sbjct: 609 EAMEDGEIDGNKVTLDFA 626
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 51.6 bits (122), Expect = 2e-06 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 3/144 (2%) Frame = -2 Query: 624 ASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSD 445 + R +G+A+V F ++S+ L G R + V + +++ + ++ Sbjct: 199 SDRNSRRSKGIAYVEF----CEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANN 254 Query: 444 PEKPDGC-LSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 +K +G + YVG+L +NI+E LR F+ +I +I D TG S+G+ + F D Sbjct: 255 LQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 314 Query: 270 ESLEKAV-GMNQSELRGRPVKIAY 202 E +A+ +N EL GRP+++ + Sbjct: 315 ECARRALEQLNGFELAGRPMRVGH 338 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Frame = -2 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 PE+ D + + L+ I +DL DFF + ++ +R D+ + S+G +V+F + + Sbjct: 160 PEERDA-RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 218 Query: 267 SLEKAVGMNQSELRGRPV 214 S+ A+G+ L G P+ Sbjct: 219 SVPLAIGLTGQRLLGVPI 236
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/75 (30%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDS-RGFCHVDFEDDESLEKAVGM 244 +A++GNL ++++E ++DFF+ I+++R + D +GF + +FED +SL A+ + Sbjct: 97 TAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFEDLDSLLSALSL 156 Query: 243 NQSELRGRPVKIAYA 199 N+ L R +++ A Sbjct: 157 NEESLGNRRIRVDVA 171
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 51.2 bits (121), Expect = 3e-06 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G R +V FES E K+LEL G K+ +++E+ + D +K Sbjct: 344 GTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKVR 390 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 + NLS+NI+E +L++ F+ ++ + + G S+G +++F+ + EK + Sbjct: 391 AARTLLAKNLSFNITEDELKEVFED----ALEIRLVSQDGKSKGIAYIEFKSEADAEKNL 446 Query: 249 GMNQ-SELRGRPVKIAY 202 Q +E+ GR V + Y Sbjct: 447 EEKQGAEIDGRSVSLYY 463 Score = 46.2 bits (108), Expect = 8e-05 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 2/139 (1%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G +G AF+ F S E A ++L + +I R +R+E S + S P K Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNAR------SQPSK- 571 Query: 432 DGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +V LS + +E+ L++ F+ S A R D+ TG S+GF VDF +E + A Sbjct: 572 ----TLFVKGLSEDTTEETLKESFEGSVRA--RIVTDRETGSSKGFGFVDFNSEEDAKAA 625 Query: 252 -VGMNQSELRGRPVKIAYA 199 M E+ G V + +A Sbjct: 626 KEAMEDGEIDGNKVTLDWA 644 Score = 43.1 bits (100), Expect = 7e-04 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 10/103 (9%) Frame = -2 Query: 486 ASSKRQKKTEFQSD-----PEKPDGCLSA-----YVGNLSWNISEKDLRDFFKSSRIASI 337 A KR+K+ Q + +K +G S ++GNL+ N S +L+ + Sbjct: 276 APGKRKKEMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKND 335 Query: 336 RFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 208 +D RTG +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 336 LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 51.2 bits (121), Expect = 3e-06 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G R +V FES E K+LEL G K+ +++E+ + D +K Sbjct: 347 GTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKVR 393 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 + NLS+NI+E +L++ F+ ++ + + G S+G +++F+ + EK + Sbjct: 394 AARTLLAKNLSFNITEDELKEVFED----AVEIRLVSQDGRSKGIAYIEFKSEADAEKNL 449 Query: 249 GMNQ-SELRGRPVKIAY 202 Q +E+ GR V + Y Sbjct: 450 EEKQGAEIDGRSVSLYY 466 Score = 46.2 bits (108), Expect = 8e-05 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 2/139 (1%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G +G AF+ F S E A ++L + +I R +R+E S + S P K Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNAR------SQPSK- 574 Query: 432 DGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +V LS + +E+ L++ F+ S A R D+ TG S+GF VDF +E + A Sbjct: 575 ----TLFVKGLSEDTTEETLKESFEGSVRA--RIVTDRETGSSKGFGFVDFNSEEDAKAA 628 Query: 252 -VGMNQSELRGRPVKIAYA 199 M E+ G V + +A Sbjct: 629 KEAMEDGEIDGNKVTLDWA 647 Score = 46.2 bits (108), Expect = 8e-05 Identities = 32/106 (30%), Positives = 54/106 (50%) Frame = -2 Query: 525 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRI 346 G R + + + +K+QK S+P P + ++GNL+ N S +L+ Sbjct: 281 GKRKKEMTKQKEAPEAKKQKIEG--SEPTTP---FNLFIGNLNPNKSVAELKVAISELFA 335 Query: 345 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 208 + A+D RTG +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 336 KNDLAAVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 381
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 51.2 bits (121), Expect = 3e-06 Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G FV FE+ E A +++E ++G + +R + V R + S+++++ E + ++ Sbjct: 138 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---F 190 Query: 423 LSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG 247 + Y+ N ++ ++ L+D F K S++ D+ +G S+GF V FE E +KAV Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249 Query: 246 -MNQSELRGRPVKIAYA 199 MN EL G+ + + A Sbjct: 250 EMNGKELNGKQIYVGRA 266
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 51.2 bits (121), Expect = 3e-06 Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G FV FE+ E A +++E ++G + +R + V R + S+++++ E + ++ Sbjct: 138 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---F 190 Query: 423 LSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG 247 + Y+ N ++ ++ L+D F K S++ D+ +G S+GF V FE E +KAV Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249 Query: 246 -MNQSELRGRPVKIAYA 199 MN EL G+ + + A Sbjct: 250 EMNGKELNGKQIYVGRA 266
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 50.8 bits (120), Expect = 3e-06 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G R +V FES E K+LEL G K+ +++E+ + D +K Sbjct: 345 GTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKVR 391 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 + NLS+NI+E +L++ F+ ++ + + G S+G +++F+ + EK + Sbjct: 392 AARTLLAKNLSFNITEDELKEVFED----AMEIRLVSQDGKSKGIAYIEFKSEADAEKNL 447 Query: 249 GMNQ-SELRGRPVKIAY 202 Q +E+ GR V + Y Sbjct: 448 EEKQGAEIDGRSVSLYY 464 Score = 47.0 bits (110), Expect = 5e-05 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 2/139 (1%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G +G AF+ F S E A ++L + +I R +R+E + S+ R S P K Sbjct: 520 GKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE---LQGSNSR-------SQPSK- 568 Query: 432 DGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +V LS + +E+ L++ F+ S A R D+ TG S+GF VDF +E + A Sbjct: 569 ----TLFVKGLSEDTTEETLKESFEGSVRA--RIVTDRETGSSKGFGFVDFNSEEDAKAA 622 Query: 252 -VGMNQSELRGRPVKIAYA 199 M E+ G V + +A Sbjct: 623 KEAMEDGEIDGNKVTLDWA 641 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/106 (29%), Positives = 53/106 (50%) Frame = -2 Query: 525 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRI 346 G R + + + +K+QK S+P P + ++GNL+ N S +L+ Sbjct: 279 GKRKKEMTKQKEAPEAKKQKVEG--SEPTTP---FNLFIGNLNPNKSVNELKFAISELFA 333 Query: 345 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 208 + +D RTG +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 334 KNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 50.8 bits (120), Expect = 3e-06 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 20/167 (11%) Frame = -2 Query: 627 PASRTPGNFRG---LAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTE 457 P S PGN V + + A++ EL+ K R M E ++ + Q + E Sbjct: 87 PGSGAPGNQEEEEESGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKL---KELQNEVE 143 Query: 456 FQSDPEKPDG----------------CLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFA 328 Q + P G S YVGN+ + + ++L F + + Sbjct: 144 KQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTIL 203 Query: 327 IDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAIINR 187 DK +G +GF +++F D ES+ ++ +++S RGR +K+ NR Sbjct: 204 CDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR 250
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 50.4 bits (119), Expect = 4e-06 Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 1/142 (0%) Frame = -2 Query: 627 PASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQS 448 P G+FRG +V F+ ++ AL++LE+D + R M V C + + K + + Sbjct: 755 PIFSNRGDFRGYRYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYST 814 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 EK ++ L ++ ++++L + K+ + R G +G +V++E++ Sbjct: 815 SLEKH----KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENES 870 Query: 267 SLEKAV-GMNQSELRGRPVKIA 205 +AV M+ ++ +K+A Sbjct: 871 QASQAVMKMDGMTIKENVIKVA 892
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 50.4 bits (119), Expect = 4e-06 Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 1/142 (0%) Frame = -2 Query: 627 PASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQS 448 P G+FRG +V F+ ++ AL++LE+D + R M V C + + K + + Sbjct: 737 PIFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYST 796 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 EK ++ L ++ ++++L + K+ + R G +G +V++E++ Sbjct: 797 SLEKH----KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENES 852 Query: 267 SLEKAV-GMNQSELRGRPVKIA 205 +AV M+ ++ +K+A Sbjct: 853 QASQAVMKMDGMTIKENIIKVA 874 Score = 47.0 bits (110), Expect = 5e-05 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 8/101 (7%) Frame = -2 Query: 483 SSKRQKKTEFQSDPEK-----PDGCLSAYVGNLSWNISEKD--LRDFFKS-SRIASIRFA 328 S +++K + D K ++ +V NL +++ E D LR F++ + IR Sbjct: 679 SKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPI 738 Query: 327 IDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIA 205 R GD RG+C+V+F++++S +A+ M++ + GRP+ ++ Sbjct: 739 FSNR-GDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVS 778
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 50.4 bits (119), Expect = 4e-06 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 3/134 (2%) Frame = -2 Query: 591 AFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSA 415 AFV + A +L+ L+G +I N +++ FQS D + Sbjct: 117 AFVEYHQSHDANIALQTLNGKQIENNIVKINWA-------------FQSQQSSSDDTFNL 163 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 +VG+L+ N+ ++ LR+ FK S D +TG SRG+ V F + + A+ M Sbjct: 164 FVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 223 Query: 240 QSELRGRPVKIAYA 199 +L GRP++I +A Sbjct: 224 GQDLNGRPLRINWA 237
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Frame = -2 Query: 435 PDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLE 259 PD +VG L+W E+ L F + + D+ TG SRGF V F+D++S++ Sbjct: 4 PDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMK 63 Query: 258 KAV-GMNQSELRGRPVKI 208 A+ GMN +L GR + + Sbjct: 64 DAIEGMNGQDLDGRSITV 81
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 50.1 bits (118), Expect = 6e-06 Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 RG FV FE+ E A ++++ ++G + +R + V + S+R+++ E+ + K Sbjct: 138 RGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFK----SRRERELEYGA---KVMEF 190 Query: 423 LSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG 247 + Y+ N ++ +K LR+ F + S++ +D +G SRGF V++ + E +KAV Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVS 249 Query: 246 -MNQSELRGRPVKIAYA 199 MN E+ GR + + A Sbjct: 250 EMNGKEVNGRMIYVGRA 266 Score = 42.7 bits (99), Expect = 9e-04 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G RG FV + + E A K++ E++G ++ R + V R + + + K +F+ ++ Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQER 287 Query: 432 DGC---LSAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDES 265 ++ YV NL I + LR +F I S + + G S+GF V F E Sbjct: 288 INRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEE 345 Query: 264 LEKAV-GMNQSELRGRPVKIAYA 199 KAV MN + +P+ +A A Sbjct: 346 ATKAVTEMNGRIVSTKPLYVALA 368
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 50.1 bits (118), Expect = 6e-06 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 1/138 (0%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G RG FVTF L+ + + R + + C K +K Sbjct: 45 GRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKK-----------G 93 Query: 429 GCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 G ++G L N++E DLR FF + ++ + D+ SRGF + FE++ S+E Sbjct: 94 GGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHV 153 Query: 252 VGMNQSELRGRPVKIAYA 199 L G+ V+I A Sbjct: 154 TNERYINLNGKQVEIKKA 171 Score = 32.0 bits (71), Expect = 1.6 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 238 +VG LSW ++++L R F + I + +G SRGF V F D ++ + Sbjct: 10 FVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGP 69 Query: 237 SELRGRPV 214 L GR + Sbjct: 70 HTLDGRTI 77
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 50.1 bits (118), Expect = 6e-06 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 1/138 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG F+T+ + ++ E + I + T +KR + E Sbjct: 73 RGFGFITYTKSLMVDRAQENRPHIIDGK---------TVEAKRALPRPERESRETNISVK 123 Query: 420 SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 +VG L N E+ LR++F + + S++ DK TG RGF V+F+D ++++KA+ Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183 Query: 243 NQSELRGRPVKIAYAIIN 190 Q ++ V + +I N Sbjct: 184 KQHAIKYVHVDVKKSIYN 201
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 50.1 bits (118), Expect = 6e-06 Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 2/139 (1%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G+ +G+A+V F +++ A K+LE G +I R + V+ + + KK PE Sbjct: 358 GSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKK-----GPEGD 412 Query: 432 DGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 L V NLS++ +E LR+ F+ + SIR I + G ++GF ++F E + A Sbjct: 413 SKVL--VVNNLSYSATEDSLREVFEKA--TSIR--IPQNQGRAKGFAFIEFSSAEDAKDA 466 Query: 252 V-GMNQSELRGRPVKIAYA 199 + N +E+ GR +++ ++ Sbjct: 467 MDSCNNTEIEGRSIRLEFS 485 Score = 43.1 bits (100), Expect = 7e-04 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 11/107 (10%) Frame = -2 Query: 483 SSKRQK---KTEFQSDPEKPDGC---LSAYVGNLSWNISEKD-----LRDFFKSSRIASI 337 S+KR+K KT ++ K D LS ++GNL+ + E D LR+FF + Sbjct: 206 SAKRKKEMPKTIPEAKKTKTDTASEGLSIFIGNLN-STKEFDELKDALREFFSKKNLT-- 262 Query: 336 RFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 196 D R G+S+ F +VDF +E +EKA+ + ++ G VKI A+ Sbjct: 263 --IQDIRIGNSKKFGYVDFSSEEEVEKALKLTGKKILGTEVKIEKAM 307 Score = 41.6 bits (96), Expect = 0.002 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G +G AF+ F S E A +++ + +I R +R+E + + QS Sbjct: 447 GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSK---- 502 Query: 432 DGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +V LS + +E+ L++ F S + R D+ TG S+GF VDF E + A Sbjct: 503 ----TLFVRGLSEDTTEETLKEAFDGS--VNARIVTDRDTGASKGFGFVDFSTAEDAKAA 556 Query: 252 -VGMNQSELRGRPVKIAYA 199 M E+ G V + +A Sbjct: 557 KEAMEDGEIDGNKVTLDFA 575
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 49.7 bits (117), Expect = 7e-06 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 11/151 (7%) Frame = -2 Query: 618 RTPGNFRGLAFVTFESDE-----VALKSLELDGYKIGN-----RFMRVERCRITASSKRQ 469 +T RG FV F+ +A + LDG I R M+ ER R ++ Sbjct: 45 KTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKG 104 Query: 468 KKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIAS-IRFAIDKRTGDSRGFC 292 + SD K + +VG + N E +LR++FK + + + D RGF Sbjct: 105 PR----SDSSKSN---KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFG 157 Query: 291 HVDFEDDESLEKAVGMNQSELRGRPVKIAYA 199 + FED++S+++AV M+ ++ G+ V++ A Sbjct: 158 FITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 238 +VG L W+ +++ LR +F + DK T SRGF V F+D + + Sbjct: 13 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 72 Query: 237 SELRGRPV 214 L GR + Sbjct: 73 HTLDGRNI 80
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 49.7 bits (117), Expect = 7e-06 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG F+T+ + + +KI R T KR + P Sbjct: 65 RGFGFITYSQSYMIDNAQNARPHKIDGR---------TVEPKRAVPRQEIDSPNAGATVK 115 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 +VG L + E+ LR++FK +I S+ DK TG RGF ++F+D + ++K + Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175 Query: 243 NQSELRGRPVKIAYAI 196 ++ + + + AI Sbjct: 176 KTHSIKNKTLDVKKAI 191
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 49.7 bits (117), Expect = 7e-06 Identities = 38/137 (27%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G FV FE+ E A +++E ++G + +R + V R + S+++++ E + ++ Sbjct: 138 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---F 190 Query: 423 LSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG 247 + Y+ N ++ ++ L++ F K S++ D+ +G S+GF V FE E +KAV Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249 Query: 246 -MNQSELRGRPVKIAYA 199 MN EL G+ + + A Sbjct: 250 EMNGKELNGKQIYVGRA 266
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 49.7 bits (117), Expect = 7e-06 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 4/144 (2%) Frame = -2 Query: 618 RTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERC--RITASSKRQKKTEFQSD 445 +T RG FV F+ L + + R + + C R + + K +Q Sbjct: 45 KTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKG 104 Query: 444 PEKPDGCLSA-YVGNLSWNISEKDLRDFFKSSRIAS-IRFAIDKRTGDSRGFCHVDFEDD 271 P + + +VG + N E +LR++FK + + + D RGF + FED+ Sbjct: 105 PRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 164 Query: 270 ESLEKAVGMNQSELRGRPVKIAYA 199 +S+++AV M+ ++ G+ V++ A Sbjct: 165 QSVDQAVNMHFHDIMGKKVEVKRA 188 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 238 +VG L W+ +++ LR +F + DK T SRGF V F+D + + Sbjct: 13 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 72 Query: 237 SELRGRPV 214 L GR + Sbjct: 73 HTLDGRNI 80
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 49.7 bits (117), Expect = 7e-06 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 4/139 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVT+ + E ++ +K+ R + K+ + D ++P L Sbjct: 54 RGFGFVTYATVEEVDAAMNARPHKVDGRVVE------------PKRAVSREDSQRPGAHL 101 Query: 420 SA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +VG + + E LRD+F+ +I I D+ +G RGF V F+D +S++K Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 252 VGMNQSELRGRPVKIAYAI 196 V + G ++ A+ Sbjct: 162 VIQKYHTVNGHNCEVRKAL 180
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 49.7 bits (117), Expect = 7e-06 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 4/139 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVT+ + E ++ +K+ R + K+ + D ++P L Sbjct: 54 RGFGFVTYATVEEVDAAMNARPHKVDGRVVE------------PKRAVSREDSQRPGAHL 101 Query: 420 SA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +VG + + E LRD+F+ +I I D+ +G RGF V F+D +S++K Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 252 VGMNQSELRGRPVKIAYAI 196 V + G ++ A+ Sbjct: 162 VIQKYHTVNGHNCEVRKAL 180
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 49.7 bits (117), Expect = 7e-06 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 4/139 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVT+ + E ++ +K+ R + K+ + D ++P L Sbjct: 54 RGFGFVTYATVEEVDAAMNARPHKVDGRVVE------------PKRAVSREDSQRPGAHL 101 Query: 420 SA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +VG + + E LRD+F+ +I I D+ +G RGF V F+D +S++K Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 252 VGMNQSELRGRPVKIAYAI 196 V + G ++ A+ Sbjct: 162 VIQKYHTVNGHNCEVRKAL 180
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 49.7 bits (117), Expect = 7e-06 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 4/139 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVT+ + E ++ +K+ R + K+ + D ++P L Sbjct: 54 RGFGFVTYATVEEVDAAMNARPHKVDGRVVE------------PKRAVSREDSQRPGAHL 101 Query: 420 SA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +VG + + E LRD+F+ +I I D+ +G RGF V F+D +S++K Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 252 VGMNQSELRGRPVKIAYAI 196 V + G ++ A+ Sbjct: 162 VIQKYHTVNGHNCEVRKAL 180
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 49.3 bits (116), Expect = 1e-05 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 4/139 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVT+ E ++ +K+ R + K+ + D KP L Sbjct: 76 RGFGFVTYSCVEEVDAAMCARPHKVDGRVVE------------PKRAVSREDSVKPGAHL 123 Query: 420 SA---YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +VG + + E +LRD+F K +I +I D+++G RGF V F+D ++++K Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 252 VGMNQSELRGRPVKIAYAI 196 V + G ++ A+ Sbjct: 184 VVQKYHTINGHNCEVKKAL 202 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Frame = -2 Query: 477 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 301 +R+++ E DP++P+ ++G LS+ ++ LR+ F K + D +T SR Sbjct: 17 RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSR 76 Query: 300 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 196 GF V + E ++ A+ ++ GR V+ A+ Sbjct: 77 GFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 49.3 bits (116), Expect = 1e-05 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 4/139 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVT+ E ++ +K+ R + K+ + D KP L Sbjct: 76 RGFGFVTYSCVEEVDAAMCARPHKVDGRVVE------------PKRAVSREDSVKPGAHL 123 Query: 420 SA---YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +VG + + E +LRD+F K +I +I D+++G RGF V F+D ++++K Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 252 VGMNQSELRGRPVKIAYAI 196 V + G ++ A+ Sbjct: 184 VVQKYHTINGHNCEVKKAL 202 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Frame = -2 Query: 477 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 301 +R+++ E DP++P+ ++G LS+ ++ LR+ F K + D +T SR Sbjct: 17 RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSR 76 Query: 300 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 196 GF V + E ++ A+ ++ GR V+ A+ Sbjct: 77 GFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 49.3 bits (116), Expect = 1e-05 Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 RG FV FE+ E A ++++ ++G + +R + V + S+R+++ E+ + K Sbjct: 138 RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK----SRRERELEYGA---KVMEF 190 Query: 423 LSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 250 + Y+ N ++ +K L++ F + S++ +D +G SRGF V++ + E +KAV Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVT 249 Query: 249 GMNQSELRGRPVKIAYA 199 MN E+ GR V + A Sbjct: 250 EMNGKEVNGRMVYVGRA 266 Score = 41.6 bits (96), Expect = 0.002 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G RG FV + + E A K++ E++G ++ R + V R + + + K +F+ ++ Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQER 287 Query: 432 DGC---LSAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDES 265 ++ YV NL I + LR +F I S + + G S+GF V F E Sbjct: 288 INRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEE 345 Query: 264 LEKAV-GMNQSELRGRPVKIAYA 199 KAV MN + +P+ +A A Sbjct: 346 ATKAVTEMNGRIVSTKPLYVALA 368
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 49.3 bits (116), Expect = 1e-05 Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 S +VGN++ +++ + + D FK +I I D+ TG +G+ +++FE EKA+ + Sbjct: 65 SIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQL 124 Query: 243 NQSELRGRPVKIA 205 N EL+G+ + ++ Sbjct: 125 NGGELKGKKIAVS 137
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 49.3 bits (116), Expect = 1e-05 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 4/139 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVT+ E ++ +K+ R + K+ + D KP L Sbjct: 76 RGFGFVTYSCVEEVDAAMCARPHKVDGRVVE------------PKRAVSREDSVKPGAHL 123 Query: 420 SA---YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +VG + + E +LRD+F K +I +I D+++G RGF V F+D ++++K Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 252 VGMNQSELRGRPVKIAYAI 196 V + G ++ A+ Sbjct: 184 VVQKYHTINGHNCEVKKAL 202 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Frame = -2 Query: 477 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 301 +R+++ E DP++P+ ++G LS+ ++ LR+ F K + D +T SR Sbjct: 17 RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSR 76 Query: 300 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 196 GF V + E ++ A+ ++ GR V+ A+ Sbjct: 77 GFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 49.3 bits (116), Expect = 1e-05 Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 17/167 (10%) Frame = -2 Query: 636 ASSPASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTE 457 + +P S+ GL V + + A++ EL+ K R M E ++ + Q + E Sbjct: 85 SGAPGSQEEEEEPGL--VEADPGDGAIEDPELEAIKARVREMEEEAEKL---KELQNEVE 139 Query: 456 FQSDPEKPDG----------------CLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFA 328 Q + P G S YVGN+ + + ++L F + + Sbjct: 140 KQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTIL 199 Query: 327 IDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAIINR 187 DK +G +GF +++F D ES+ ++ +++S RGR +K+ NR Sbjct: 200 CDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR 246
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 49.3 bits (116), Expect = 1e-05 Identities = 21/75 (28%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDS-RGFCHVDFEDDESLEKAVGM 244 +A++GNL ++++E+ +++FF+ I+++R + + +GF + +FED +SL A+ + Sbjct: 97 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSL 156 Query: 243 NQSELRGRPVKIAYA 199 N+ L R +++ A Sbjct: 157 NEESLGNRRIRVDVA 171
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 49.3 bits (116), Expect = 1e-05 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 1/142 (0%) Frame = -2 Query: 627 PASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQS 448 P G+FRG +V F ++ A ++LELD + R M V C + + K + + Sbjct: 737 PIFSNRGDFRGYCYVEFGEEKSAQQALELDRKIVEGRPMFVSPCVDKSKNPDFKVFRYST 796 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 EK ++ L ++ ++++L D K+ + R G +G +V++E++ Sbjct: 797 TLEKH----KLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENES 852 Query: 267 SLEKAV-GMNQSELRGRPVKIA 205 +AV M+ +R +K+A Sbjct: 853 QASQAVMKMDGMTIRENVIKVA 874 Score = 44.7 bits (104), Expect = 2e-04 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 3/134 (2%) Frame = -2 Query: 597 GLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLS 418 G A E E++ K L +D +G + E+ A+S ++ + D K ++ Sbjct: 655 GEASAMKEETELSGKCLTID---VGPPSKQKEK----AASLKRDMPKVAHDSSKDS--VT 705 Query: 417 AYVGNLSWNISEKD--LRDFFK-SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG 247 +V NL ++I E + LR F+ + IR R GD RG+C+V+F +++S ++A+ Sbjct: 706 VFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNR-GDFRGYCYVEFGEEKSAQQALE 764 Query: 246 MNQSELRGRPVKIA 205 +++ + GRP+ ++ Sbjct: 765 LDRKIVEGRPMFVS 778
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 49.3 bits (116), Expect = 1e-05 Identities = 38/137 (27%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G FV FE+ E A +++E ++G + +R + V R + S+++++ E + ++ Sbjct: 138 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SQKEREAELGARAKE---F 190 Query: 423 LSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG 247 + Y+ N ++ ++ L++ F K S++ D+ +G S+GF V FE E +KAV Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249 Query: 246 -MNQSELRGRPVKIAYA 199 MN EL G+ + + A Sbjct: 250 EMNGKELNGKQIYVGRA 266
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 YVGNLSW + + L + F + ++ R D+ +G S+GF V + ++KA+ +N Sbjct: 260 YVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 319 Query: 240 QSELRGRPVKIAYA 199 ++L GR ++++ A Sbjct: 320 GADLDGRQIRVSEA 333 Score = 43.9 bits (102), Expect = 4e-04 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = -2 Query: 423 LSAYVGNLSWNISEKDLRDFFKSS-RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 250 L +VGNLS+N+ L F+S+ + + DK TG SRGF V +E A Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQ 158 Query: 249 GMNQSELRGRPVKI 208 N E GRP+++ Sbjct: 159 QFNGYEFEGRPLRV 172
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 48.9 bits (115), Expect = 1e-05 Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 17/167 (10%) Frame = -2 Query: 636 ASSPASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTE 457 + +P S+ GL V + + A++ EL+ K R M E ++ + Q + E Sbjct: 89 SGAPGSQEEEEEPGL--VEGDPGDGAIEDPELEAIKARVREMEEEAEKL---KELQNEVE 143 Query: 456 FQSDPEKPDG----------------CLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFA 328 Q + P G S YVGN+ + + ++L F + + Sbjct: 144 KQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTIL 203 Query: 327 IDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAIINR 187 DK +G +GF +++F D ES+ ++ +++S RGR +K+ NR Sbjct: 204 CDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR 250
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 4/139 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVT+ + E ++ +K+ R + K+ + D ++P L Sbjct: 54 RGFGFVTYATVEKVDAAMNARPHKVDGRVVE------------PKRAVSREDSQRPGAHL 101 Query: 420 SA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +VG + + E LRD+F+ +I I D+ +G RGF V F+D S++K Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKI 161 Query: 252 VGMNQSELRGRPVKIAYAI 196 V + G ++ A+ Sbjct: 162 VIQKYHTVNGHNCEVRKAL 180
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 48.5 bits (114), Expect = 2e-05 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Frame = -2 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 + +K S ++GN+ +N + +++ + FK +I DK T + F +++F+D Sbjct: 93 EEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDS 152 Query: 270 ESLEKAVGMNQSELRGRPVKI 208 S+E A+ MN S R RP+ + Sbjct: 153 SSIENALVMNGSLFRSRPIVV 173
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Frame = -2 Query: 435 PDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLE 259 PD +VG L+W ++ L F + + D+ TG SRGF V F+D++S++ Sbjct: 4 PDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMK 63 Query: 258 KAV-GMNQSELRGRPVKI 208 A+ GMN +L GR + + Sbjct: 64 DAIEGMNGQDLDGRSITV 81
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 48.1 bits (113), Expect = 2e-05 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Frame = -2 Query: 591 AFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAY 412 A++ F A +L L+G +R +RV+ S P D + Sbjct: 229 AYIVFRDSSSARSALSLNGTMFMDRHLRVDSV---------------SHPMPQDTKRCVF 273 Query: 411 VGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQS 235 VGNL++ E+ L R F I +R D +T +GF ++ F+D ++KA+ +N+ Sbjct: 274 VGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEK 333 Query: 234 EL-RGRPVKIAYA 199 ++ GR ++I A Sbjct: 334 KMPEGRTLRIMRA 346
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MN 241 ++G LSW + LRD F + + +D+ TG SRGF V+F D+ + A+ M+ Sbjct: 38 FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97 Query: 240 QSELRGRPVKI 208 EL GR +++ Sbjct: 98 GKELNGRHIRV 108
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 +VG L+W +++ L F I + D+ TG SRGF V F+D++S+ A+ GMN Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 240 QSELRGRPVKI 208 EL GR + + Sbjct: 69 GQELDGRNITV 79
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 48.1 bits (113), Expect = 2e-05 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G AFV FE+ E A K++E ++G + +R + V R + S+++++ E + K Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGA---KAKEF 190 Query: 423 LSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 250 + Y+ N + ++ L++ F + S++ D G S+GF V +E E KAV Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVE 249 Query: 249 GMNQSELRGRPVKIAYA 199 MN E+ G+ + + A Sbjct: 250 EMNGKEISGKIIFVGRA 266 Score = 34.3 bits (77), Expect = 0.32 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Frame = -2 Query: 597 GLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPE-KPDGCL 421 G A+V F+ A ++L+ + + ++ + RI S Q DP + G Sbjct: 53 GYAYVNFQQPADAERALDTMNFDV----IKGKPIRIMWS---------QRDPSLRKSGVG 99 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 247 + ++ NL +I K L D F + I S + D+ S+G+ V FE E+ +KA+ Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEK 157 Query: 246 MNQSELRGRPV 214 MN L R V Sbjct: 158 MNGMLLNDRKV 168
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 48.1 bits (113), Expect = 2e-05 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 8/142 (5%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCR-----ITASSKRQKKTEFQS 448 G R FVT ++ E A +E L+ +IG R ++V + ++ + + ++F Sbjct: 122 GRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVE 181 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDD 271 P K Y+GNL+ ++ + L+DFF + ++ + T S GF V F + Sbjct: 182 SPYK------VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSE 235 Query: 270 ESLEKAV-GMNQSELRGRPVKI 208 E +E A+ +N S L G+ +++ Sbjct: 236 EEVEAAIQALNNSVLEGQKIRV 257
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 48.1 bits (113), Expect = 2e-05 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 4/139 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVT+ E S+ +K+ R + K+ + D +P L Sbjct: 68 RGFGFVTYSCVEEVDASMSARPHKVDGRVVE------------PKRAVSREDSARPGAHL 115 Query: 420 SA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +VG + + E LRD+ +S +I +I D+++G RGF V F+D ++++K Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 175 Query: 252 VGMNQSELRGRPVKIAYAI 196 V + G ++ A+ Sbjct: 176 VVQKYHTINGHNCEVKKAL 194 Score = 37.4 bits (85), Expect = 0.038 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Frame = -2 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 DP++P+ ++G LS+ ++ LR+ F+ ++ D +T SRGF V + Sbjct: 19 DPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCV 78 Query: 270 ESLEKAVGMNQSELRGRPVKIAYAI 196 E ++ ++ ++ GR V+ A+ Sbjct: 79 EEVDASMSARPHKVDGRVVEPKRAV 103
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 2/100 (2%) Frame = -2 Query: 480 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 304 S R++ +++P+ P+ CL + LS +E+DLR+ F K IA + D+++ S Sbjct: 102 STRRRHVGNRANPD-PNCCLGVF--GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158 Query: 303 RGFCHVDFED-DESLEKAVGMNQSELRGRPVKIAYAIINR 187 RGF V FE+ D++ E N EL GR +++ ++I R Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 2/100 (2%) Frame = -2 Query: 480 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 304 S R++ +++P+ P+ CL + LS +E+DLR+ F K IA + D+++ S Sbjct: 102 STRRRHVGNRANPD-PNCCLGVF--GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158 Query: 303 RGFCHVDFED-DESLEKAVGMNQSELRGRPVKIAYAIINR 187 RGF V FE+ D++ E N EL GR +++ ++I R Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 2/100 (2%) Frame = -2 Query: 480 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 304 S R++ +++P+ P+ CL + LS +E+DLR+ F K IA + D+++ S Sbjct: 102 STRRRHVGNRANPD-PNCCLGVF--GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158 Query: 303 RGFCHVDFED-DESLEKAVGMNQSELRGRPVKIAYAIINR 187 RGF V FE+ D++ E N EL GR +++ ++I R Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 47.4 bits (111), Expect = 4e-05 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVT+ E S+ +K+ R + K+ + D +P L Sbjct: 68 RGFGFVTYSCVEEVDASMSARPHKVDGRVVE------------PKRAVSREDSARPGAHL 115 Query: 420 SA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +VG + + E LRD+F+ +I +I D+++G RGF V F+D ++++K Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 175 Query: 252 V 250 V Sbjct: 176 V 176
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Frame = -2 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 + +K S ++GN+ +N + +++ + FK I DK T + F +++F+D Sbjct: 53 EEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDS 112 Query: 270 ESLEKAVGMNQSELRGRPVKI 208 S+E A+ MN S R RP+ + Sbjct: 113 SSIENALVMNGSLFRSRPIVV 133
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Frame = -2 Query: 453 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFE 277 Q DP K ++G LSW S LRD+F K I D T SRGF V F Sbjct: 17 QHDPGK------MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70 Query: 276 DDESLEKAVGMNQSELRGRPVKIAYAIINRA 184 D S++K +G EL + + A RA Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVAFPRRA 101 Score = 38.9 bits (89), Expect = 0.013 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEF--QSDPEKPDG 427 RG FVTF K L +++ ++ + K F ++ P+ Sbjct: 62 RGFGFVTFADPASVDKVLGQPHHELDSKTI-------------DPKVAFPRRAQPKMVTR 108 Query: 426 CLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 +VG LS N +D++ +F+ ++ DK T RGF V FE+++ +EK Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168 Query: 249 GMNQSELRGRPVK 211 ++ E+ + V+ Sbjct: 169 EIHFHEINNKMVE 181 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = -2 Query: 618 RTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCR 493 +T RG FVTFE+++V K E+ ++I N+ + ++ + Sbjct: 145 KTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Frame = -2 Query: 453 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFE 277 Q DP K ++G LSW S LRD+F K I D T SRGF V F Sbjct: 17 QHDPGK------MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70 Query: 276 DDESLEKAVGMNQSELRGRPVKIAYAIINRA 184 D S++K +G EL + + A RA Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVAFPRRA 101 Score = 38.9 bits (89), Expect = 0.013 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEF--QSDPEKPDG 427 RG FVTF K L +++ ++ + K F ++ P+ Sbjct: 62 RGFGFVTFADPASVDKVLGQPHHELDSKTI-------------DPKVAFPRRAQPKMVTR 108 Query: 426 CLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 +VG LS N +D++ +F+ ++ DK T RGF V FE+++ +EK Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168 Query: 249 GMNQSELRGRPVK 211 ++ E+ + V+ Sbjct: 169 EIHFHEINNKMVE 181 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = -2 Query: 618 RTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCR 493 +T RG FVTFE+++V K E+ ++I N+ + ++ + Sbjct: 145 KTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 47.0 bits (110), Expect = 5e-05 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MN 241 +VG L+W + +L R F + + + D+ TG SRGF V F+D++S++ A+ MN Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 240 QSELRGRPVKI 208 EL GR + + Sbjct: 69 GKELDGRTITV 79
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 46.6 bits (109), Expect = 6e-05 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Frame = -2 Query: 525 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLR----DFFK 358 G R + + + +K+QK + +P + +VGNL++N S +L+ D F Sbjct: 277 GKRKKEMAKQKAAPEAKKQKV-----EGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 331 Query: 357 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 208 + +A +D R G +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 332 KNDLA----VVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 377 Score = 46.2 bits (108), Expect = 8e-05 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G R +V FES E K+LEL G K+ +++E+ + D +K Sbjct: 343 GMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GKDSKKER 389 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 + NL + +++ +L++ F+ + A IR + G S+G +++F+ + EK Sbjct: 390 DARTLLAKNLPYKVTQDELKEVFEDA--AEIRLV--SKDGKSKGIAYIEFKTEADAEKTF 445 Query: 249 GMNQ-SELRGRPVKIAY 202 Q +E+ GR + + Y Sbjct: 446 EEKQGTEIDGRSISLYY 462 Score = 45.1 bits (105), Expect = 2e-04 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 2/139 (1%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G +G AF+ F S E A ++L + +I R +R+E S + S P K Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNAR------SQPSK- 571 Query: 432 DGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +V LS + +E+ L++ F S A R D+ TG S+GF VDF +E + A Sbjct: 572 ----TLFVKGLSEDTTEETLKESFDGSVRA--RIVTDRETGSSKGFGFVDFNSEEDAKAA 625 Query: 252 -VGMNQSELRGRPVKIAYA 199 M E+ G V + +A Sbjct: 626 KEAMEDGEIDGNKVTLDWA 644
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 46.6 bits (109), Expect = 6e-05 Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G FV FE+ E A ++++ ++G + +R + V R + S+++++ E + ++ Sbjct: 138 KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---F 190 Query: 423 LSAYVGNLSWNISEKDLRDFFKSSRIA-SIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 250 + Y+ N ++ ++ L+++F A S++ D G SRGF V FE E +KAV Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVD 249 Query: 249 GMNQSELRGRPVKIAYA 199 MN +L G+ + + A Sbjct: 250 DMNGKDLNGKAIFVGRA 266
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 46.6 bits (109), Expect = 6e-05 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Frame = -2 Query: 525 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLR----DFFK 358 G R + + + +K+QK + +P + +VGNL++N S +L+ D F Sbjct: 278 GKRKKEMAKQKAAPEAKKQKV-----EGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 332 Query: 357 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 208 + +A +D R G +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 333 KNDLA----VVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378 Score = 46.2 bits (108), Expect = 8e-05 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G R +V FES E K+LEL G K+ +++E+ + D +K Sbjct: 344 GMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GKDSKKER 390 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 + NL + +++ +L++ F+ + A IR + G S+G +++F+ + EK Sbjct: 391 DARTLLAKNLPYKVTQDELKEVFEDA--AEIRLV--SKDGKSKGIAYIEFKTEADAEKTF 446 Query: 249 GMNQ-SELRGRPVKIAY 202 Q +E+ GR + + Y Sbjct: 447 EEKQGTEIDGRSISLYY 463 Score = 45.1 bits (105), Expect = 2e-04 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 2/139 (1%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G +G AF+ F S E A ++L + +I R +R+E S + S P K Sbjct: 520 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNAR------SQPSK- 572 Query: 432 DGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +V LS + +E+ L++ F S A R D+ TG S+GF VDF +E + A Sbjct: 573 ----TLFVKGLSEDTTEETLKESFDGSVRA--RIVTDRETGSSKGFGFVDFNSEEDAKAA 626 Query: 252 -VGMNQSELRGRPVKIAYA 199 M E+ G V + +A Sbjct: 627 KEAMEDGEIDGNKVTLDWA 645
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -2 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 270 ESLEKAV-GMNQSELRGRPVKI 208 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -2 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 270 ESLEKAV-GMNQSELRGRPVKI 208 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 46.6 bits (109), Expect = 6e-05 Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G FV FE+ E A ++++ ++G + R + V + + S+++++ E + ++ Sbjct: 138 KGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK----SRKEREAELGARAKEFP-- 191 Query: 423 LSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG 247 + Y+ N ++ ++ L+D F K S++ D+ +G S+GF V FE E +KAV Sbjct: 192 -NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249 Query: 246 -MNQSELRGRPVKIAYA 199 MN EL G+ + + A Sbjct: 250 EMNGKELNGKQIYVGRA 266
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 46.6 bits (109), Expect = 6e-05 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 11/151 (7%) Frame = -2 Query: 618 RTPGNFRGLAFVTFESDE-----VALKSLELDGYKIGN-----RFMRVERCRITASSKRQ 469 +T RG FV F+ +A + LDG I R M+ ER R +++ Sbjct: 45 KTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQK 104 Query: 468 KKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 292 + S K +VG + N E +L+++F + + + D RGF Sbjct: 105 EPRTENSRSNK------IFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFG 158 Query: 291 HVDFEDDESLEKAVGMNQSELRGRPVKIAYA 199 + FED++S+++AV M+ ++ G+ V++ A Sbjct: 159 FITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 189 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 238 +VG L W+ +++ LR +F + DK T SRGF V F+D + + Sbjct: 13 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 72 Query: 237 SELRGRPV 214 L GR + Sbjct: 73 HTLDGRNI 80
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 46.6 bits (109), Expect = 6e-05 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 1/145 (0%) Frame = -2 Query: 627 PASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQS 448 PAS+ RG FVTF ++ + I R + KR E + Sbjct: 44 PASKRS---RGFGFVTFSCMNEVDAAMATRPHTIDGRVVE---------PKRAVAREESA 91 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 P +VG + + E LR++F+ +I SI DK++G RGF V F+D Sbjct: 92 KPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDH 151 Query: 270 ESLEKAVGMNQSELRGRPVKIAYAI 196 + ++K V + G ++ A+ Sbjct: 152 DPVDKIVLQKYHTINGHNAEVRKAL 176
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 46.6 bits (109), Expect = 6e-05 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVT+ S + ++ +K+ R + K+ + D +P L Sbjct: 55 RGFGFVTYLSTDEVDAAMTARPHKVDGRVVE------------PKRAVSREDSSRPGAHL 102 Query: 420 SA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +VG + + E LR++F+ +I I D+ +G RGF V FED +S++K Sbjct: 103 TVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKI 162 Query: 252 V 250 V Sbjct: 163 V 163
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 46.6 bits (109), Expect = 6e-05 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Frame = -2 Query: 525 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLR----DFFK 358 G R + + + +K+QK + +P + +VGNL++N S +L+ D F Sbjct: 279 GKRKKEMAKQKAAPEAKKQKV-----EGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 333 Query: 357 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 208 + +A +D R G +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 334 KNDLA----VVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379 Score = 46.2 bits (108), Expect = 8e-05 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G R +V FES E K+LEL G K+ +++E+ + D +K Sbjct: 345 GMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GKDSKKER 391 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 + NL + +++ +L++ F+ + A IR + G S+G +++F+ + EK Sbjct: 392 DARTLLAKNLPYKVTQDELKEVFEDA--AEIRLV--SKDGKSKGIAYIEFKTEADAEKTF 447 Query: 249 GMNQ-SELRGRPVKIAY 202 Q +E+ GR + + Y Sbjct: 448 EEKQGTEIDGRSISLYY 464 Score = 45.1 bits (105), Expect = 2e-04 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 2/139 (1%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 G +G AF+ F S E A ++L + +I R +R+E S + S P K Sbjct: 521 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNAR------SQPSK- 573 Query: 432 DGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 + +V LS + +E+ L++ F S A R D+ TG S+GF VDF +E + A Sbjct: 574 ----TLFVKGLSEDTTEETLKESFDGSVRA--RIVTDRETGSSKGFGFVDFNSEEDAKAA 627 Query: 252 -VGMNQSELRGRPVKIAYA 199 M E+ G V + +A Sbjct: 628 KEAMEDGEIDGNKVTLDWA 646
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 46.2 bits (108), Expect = 8e-05 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 1/145 (0%) Frame = -2 Query: 627 PASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQS 448 PAS+ RG FVTF S ++ + I R + KR E Sbjct: 56 PASKRS---RGFGFVTFSSMAEVDAAMAARPHSIDGRVVE---------PKRAVAREESG 103 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 P +VG + + E LRD+F+ +I +I D+++G RGF V F+D Sbjct: 104 KPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDH 163 Query: 270 ESLEKAVGMNQSELRGRPVKIAYAI 196 + ++K V + G ++ A+ Sbjct: 164 DPVDKIVLQKYHTINGHNAEVRKAL 188
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 46.2 bits (108), Expect = 8e-05 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 3/145 (2%) Frame = -2 Query: 624 ASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSD 445 A+ GN +G FV FE++E A S++ K+ + ++ + R+++ + Sbjct: 122 ATDEKGNSKGYGFVHFETEEAANTSID----KVNGMLLNGKKVYVGKFIPRKEREKELG- 176 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 EK + YV N + + ++ L++FF+ +I S + + K G S+GF V FE E Sbjct: 177 -EKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYK-VMSKEDGKSKGFGFVAFETTE 234 Query: 267 SLEKAV-GMNQSEL-RGRPVKIAYA 199 + E AV +N ++ G+ + +A A Sbjct: 235 AAEAAVQALNGKDMGEGKSLYVARA 259
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 +VG L + ++E D+ F I +I DK+TG S+GFC + +ED S AV N Sbjct: 39 FVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98 Query: 240 QSELRGRPVKIAYAIINRA 184 +++GR +++ + RA Sbjct: 99 GIKIKGRTIRVDHVSNYRA 117
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 46.2 bits (108), Expect = 8e-05 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 1/145 (0%) Frame = -2 Query: 627 PASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQS 448 PAS+ RG FVTF S ++ + I R + KR E Sbjct: 44 PASKRS---RGFGFVTFSSMAEVDAAMAARPHSIDGRVVE---------PKRAVAREESG 91 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 P +VG + + E LRD+F+ +I +I D+++G RGF V F+D Sbjct: 92 KPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDH 151 Query: 270 ESLEKAVGMNQSELRGRPVKIAYAI 196 + ++K V + G ++ A+ Sbjct: 152 DPVDKIVLQKYHTINGHNAEVRKAL 176
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -2 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 270 ESLEKAV-GMNQSELRGRPVKI 208 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 45.8 bits (107), Expect = 1e-04 Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 4/147 (2%) Frame = -2 Query: 627 PASRTPGNFRGLAFVTFESDEVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQ 451 P R G +G FV F S+E A ++++ + K+ + +RV + +S K + Sbjct: 45 PKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNK-----ASAHNKNLDVG 99 Query: 450 SDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIA--SIRFAIDKRTGDSRGFCHVDFE 277 ++ ++GNL I EK L D F + + + + D TG+S+G+ ++F Sbjct: 100 AN---------IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA 150 Query: 276 DDESLEKAV-GMNQSELRGRPVKIAYA 199 ++ + A+ MN L RP+ ++YA Sbjct: 151 SFDASDAAIEAMNGQYLCNRPITVSYA 177
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -2 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 270 ESLEKAV-GMNQSELRGRPVKI 208 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -2 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 270 ESLEKAV-GMNQSELRGRPVKI 208 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -2 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 270 ESLEKAV-GMNQSELRGRPVKI 208 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 45.8 bits (107), Expect = 1e-04 Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 14/149 (9%) Frame = -2 Query: 600 RGLAFVTF---ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 433 RG +VTF E + ALK + +G KI + V + ++ +K + K E P+K Sbjct: 44 RGFGYVTFSMLEDVQRALKEITTFEGCKIN---VTVAKKKLRNKTKEKGKNENSECPKKE 100 Query: 432 DGCLSAYVG---------NLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDF 280 A V NLS+ SE DL+ F K G RGF V F Sbjct: 101 PKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQF 160 Query: 279 EDDESLEKAV-GMNQSELRGRPVKIAYAI 196 ++ KA+ GMN E++GR V + +A+ Sbjct: 161 KNLLEAGKALKGMNMKEIKGRTVAVDWAV 189
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 45.8 bits (107), Expect = 1e-04 Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 2/135 (1%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 +G ++ F++ E LEL + R M ++ S R K + + + P + Sbjct: 183 KGFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSE--NYSGRPDKDDLVAMSKNPPSRI 240 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE-SLEKAVG 247 +VGNLS+++++ LR F+ I IR A + +G +GF +DF+++E S + Sbjct: 241 -LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKD 299 Query: 246 MNQSELRGRPVKIAY 202 + ++ GRP+++ Y Sbjct: 300 KSCRKIAGRPLRMEY 314 Score = 33.1 bits (74), Expect = 0.71 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 18/96 (18%) Frame = -2 Query: 441 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-----------------SRIASIRFAIDKRT 313 +K + ++GNLS++ ++ DL FF + +R++ R A Sbjct: 119 KKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAAKNSN 178 Query: 312 G-DSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 208 ++GFC++ F++ E ++ + +++S L GR + I Sbjct: 179 AMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLI 214
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -2 Query: 423 LSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 250 +S YVGNLS+++SE DL F + + ++ D+ TG RGF V+ E D A+ Sbjct: 1 MSIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIE 60 Query: 249 GMNQSELRGRPVKI 208 ++ +E GR +K+ Sbjct: 61 ALDGAEWMGRDLKV 74
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 45.4 bits (106), Expect = 1e-04 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 10/129 (7%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRV--ERCRITASSKRQKKTEFQS---- 448 GN G FV S+E K+L+ + +G R++ V E+ TA + T +Q Sbjct: 329 GNKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLG 388 Query: 447 -DPEKPDGCLSA--YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDF 280 + E+ D S +V NLS+ SE+DL F + ++ + + ID T +GF V F Sbjct: 389 ENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTF 448 Query: 279 EDDESLEKA 253 E KA Sbjct: 449 MFPEHAVKA 457 Score = 35.8 bits (81), Expect = 0.11 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 11/144 (7%) Frame = -2 Query: 597 GLAFVTFESDEVALKSLE------LDGYKIGNRFM-RVERCRITASSKRQKKTEFQSDPE 439 G FV ++ E A K+L+ +DG+K+ R R + +T++ K+Q Sbjct: 767 GFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVP-------- 818 Query: 438 KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKR-TGDSRGFCHVDFEDDES 265 K V N+ + +++++R+ F + + ++R TG RGF VDF + Sbjct: 819 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 878 Query: 264 LEKAVG--MNQSELRGRPVKIAYA 199 +KA + + L GR + + +A Sbjct: 879 AKKAFNALCHSTHLYGRRLVLEWA 902
>NOP12_CANAL (Q5AHI7) Nucleolar protein 12| Length = 454 Score = 45.1 bits (105), Expect = 2e-04 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 9/143 (6%) Frame = -2 Query: 591 AFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAY 412 A++ ++ ++ + EL+ + +RV+ S P D + + Sbjct: 224 AYIVYKEKPASIAAKELNATVFEDHHLRVDHV---------------SHPAPKDNKRTIF 268 Query: 411 VGNLSWNISEKDLRDFFKSSR---IASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 241 VGNL + E+ L +F S + S+R D +T +GF V F+D S+ KA+ +N Sbjct: 269 VGNLDFEEKEETLWKYFNSKLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSVNKALLLN 328 Query: 240 QSEL------RGRPVKIAYAIIN 190 L +GR ++I+ A N Sbjct: 329 DKPLETGTQKKGRKLRISRAKSN 351
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 45.1 bits (105), Expect = 2e-04 Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 9/126 (7%) Frame = -2 Query: 570 DEVALKSLELDGYKIGNRFMRVERC---RITASSKRQKKTEFQSDPEKPDGCLSA----Y 412 +EV++ EL + N +ER +I +S QK S+ E+ +S + Sbjct: 267 EEVSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSEQERNIQLISETKRLF 326 Query: 411 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMNQ 238 + NL+++ +E DL+ F ++ + IDK+T + +GF ++DF D D+++ + ++ Sbjct: 327 LRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDA 386 Query: 237 SELRGR 220 +GR Sbjct: 387 KPFQGR 392
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 +VG L+W +++DL R F + + + D+ +G SRGF V F+D++++ A+ MN Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 240 QSELRGRPVKI 208 EL GR + + Sbjct: 69 GKELDGRVITV 79
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 247 S YVG+L ++SE L D F ++SIR D T S G+ +V+F D E+ KA+ Sbjct: 38 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 97 Query: 246 MNQSELRGRPVKIAYA 199 +N + ++GR +I ++ Sbjct: 98 LNYTPIKGRLCRIMWS 113 Score = 42.4 bits (98), Expect = 0.001 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 9/146 (6%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLE------LDGYK--IGNRFMRVERCRITASSKRQKKTEF 454 G +G FV +E E A+K++E L+G K +G + ER + K+Q + Sbjct: 255 GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVL---KKQYEAYR 311 Query: 453 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFED 274 K G ++ +V NL ++ ++ L + F + + G S+GF V F Sbjct: 312 LEKMAKYQG-VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFST 370 Query: 273 DESLEKAV-GMNQSELRGRPVKIAYA 199 E KA+ NQ + G+P+ +A A Sbjct: 371 PEEATKAITEKNQQIVAGKPLYVAIA 396 Score = 39.7 bits (91), Expect = 0.008 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 3/134 (2%) Frame = -2 Query: 597 GLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPE-KPDGCL 421 G A+V F E K++E Y ++ CRI S Q DP + G Sbjct: 79 GYAYVNFNDHEAGRKAIEQLNYTP----IKGRLCRIMWS---------QRDPSLRKKGSG 125 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 247 + ++ NL +I K L D F I S + A D+ G S+GF V FE++ + ++A+ Sbjct: 126 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDA 184 Query: 246 MNQSELRGRPVKIA 205 +N L G+ + +A Sbjct: 185 LNGMLLNGQEIYVA 198
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 ++G L + ++E D+ F I +I DK+TG S+GFC + +ED S AV N Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98 Query: 240 QSELRGRPVKIAYAIINRA 184 +++GR +++ + RA Sbjct: 99 GIKIKGRTIRVDHVSNYRA 117
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 44.7 bits (104), Expect = 2e-04 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 16/141 (11%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 +G A+V F +++ +L+ + R + ++ T+F P KP L Sbjct: 165 KGFAYVDFATEDALKLALQCSEKALNGRNILIK-----------SNTDFSGRPSKPANTL 213 Query: 420 SA---------------YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCH 289 S +VGNL + ++ DL++ F + +I +R + TG +GF Sbjct: 214 SKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGF 273 Query: 288 VDFEDDESLEKAVGMNQSELR 226 VDF D ++ KA+ + + R Sbjct: 274 VDFPDIDTCMKAMELGHNSWR 294 Score = 38.9 bits (89), Expect = 0.013 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 20/111 (18%) Frame = -2 Query: 480 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-------------------K 358 +K +K E +S E +VGNLS++ +++ L DFF Sbjct: 86 AKYGRKEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFFVRETSEMIKEVSEENIKPIT 145 Query: 357 SSRIASIRFAIDK-RTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 208 + +I I + K + ++GF +VDF +++L+ A+ ++ L GR + I Sbjct: 146 TEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILI 196
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 +VG L+W S + L + F S I + D+ TG SRGF V F + S+ A+ MN Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 240 QSELRGRPVKIAYA 199 EL GR + + A Sbjct: 71 GKELDGRNITVNQA 84
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 44.3 bits (103), Expect = 3e-04 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG- 247 S YVG L +++E L + F S +ASIR D T S G+ +V+F + E EKA+ Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140 Query: 246 MNQSELRGRPVKIAYA 199 +N + ++GRP +I ++ Sbjct: 141 LNYTLIKGRPCRIMWS 156 Score = 40.4 bits (93), Expect = 0.004 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPE----- 439 RG FV + + E A K++ EL+ + + + V R A K +++ E + E Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGR----AQKKHEREEELRKRYEQMKLE 356 Query: 438 ---KPDGCLSAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDD 271 K G ++ ++ NL + ++ L+ +F I S + D++ G S+GF V + Sbjct: 357 KMNKYQG-VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTP 414 Query: 270 ESLEKAV-GMNQSELRGRPVKIAYA 199 E KAV MNQ L G+P+ +A A Sbjct: 415 EEANKAVTEMNQRMLAGKPLYVALA 439
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 44.3 bits (103), Expect = 3e-04 Identities = 35/137 (25%), Positives = 73/137 (53%), Gaps = 3/137 (2%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G FV FE+ E A ++++ ++G + +R + V R + S+++++ E + ++ Sbjct: 138 KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---F 190 Query: 423 LSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG 247 + Y+ N +++++ L++ F K S++ D G S+GF V FE E +KAV Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVD 249 Query: 246 -MNQSELRGRPVKIAYA 199 MN ++ G+ + + A Sbjct: 250 EMNGKDMNGKSMFVGRA 266
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 44.3 bits (103), Expect = 3e-04 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 +VG L+W ++ L F + + D+ TG SRGF V F+D+++++ A+ GMN Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 240 QSELRGRPVKI 208 +L GR + + Sbjct: 71 GQDLDGRSITV 81
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%) Frame = -2 Query: 483 SSKRQKKTEFQSDPEKPD----GCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDK 319 S +Q+ T+ + + K D C ++G L+W+ +E +LR++F K + ++ D Sbjct: 136 SPPQQQVTQTKEERSKADLSKESC-KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP 194 Query: 318 RTGDSRGFCHVDFEDDESLEKAV 250 TG SRGF + FE S+++ V Sbjct: 195 ATGRSRGFGFLSFEKPSSVDEVV 217 Score = 39.3 bits (90), Expect = 0.010 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 5/142 (3%) Frame = -2 Query: 609 GNFRGLAFVTFES----DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDP 442 G RG F++FE DEV LDG I K D Sbjct: 197 GRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI------------------DPKRAIPRDE 238 Query: 441 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 265 + G + +VG + ++ K+ +FF I + +DK TG SRGF V ++ ++ Sbjct: 239 QDKTGKI--FVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 296 Query: 264 LEKAVGMNQSELRGRPVKIAYA 199 +++ + + R ++I A Sbjct: 297 VDRVCQNKFIDFKDRKIEIKRA 318
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Frame = -2 Query: 450 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED 274 + P+ P ++G LSW +++ LR++F + + D T SRGF V F D Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 273 DESLEKAVGMNQSELRGRPVKIAYAIINRA 184 ++K + ++ EL + + A RA Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRA 100 Score = 33.1 bits (74), Expect = 0.71 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = -2 Query: 618 RTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCR 493 +T RG FVTFES+++ K E+ ++I N+ + ++ + Sbjct: 144 KTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Frame = -2 Query: 450 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED 274 + P+ P ++G LSW +++ LR++F + + D T SRGF V F D Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 273 DESLEKAVGMNQSELRGRPVKIAYAIINRA 184 ++K + ++ EL + + A RA Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRA 100 Score = 33.1 bits (74), Expect = 0.71 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = -2 Query: 618 RTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCR 493 +T RG FVTFES+++ K E+ ++I N+ + ++ + Sbjct: 144 KTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Frame = -2 Query: 450 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED 274 + P+ P ++G LSW +++ LR++F + + D T SRGF V F D Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 273 DESLEKAVGMNQSELRGRPVKIAYAIINRA 184 ++K + ++ EL + + A RA Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRA 100 Score = 33.1 bits (74), Expect = 0.71 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = -2 Query: 618 RTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCR 493 +T RG FVTFES+++ K E+ ++I N+ + ++ + Sbjct: 144 KTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 43.5 bits (101), Expect = 5e-04 Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 1/145 (0%) Frame = -2 Query: 627 PASRTPGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQS 448 PAS+ RG FVTF ++ + I R + KR E + Sbjct: 44 PASKRS---RGFGFVTFSCMNEVDAAMSARPHTIDGRVVE---------PKRAVAREESA 91 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 271 P +VG + + E LR++F+ +I S DK++G RGF V F D Sbjct: 92 KPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDH 151 Query: 270 ESLEKAVGMNQSELRGRPVKIAYAI 196 + ++K V + G ++ A+ Sbjct: 152 DPVDKIVLQKYHTINGHNAEVRKAL 176 Score = 30.8 bits (68), Expect = 3.5 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 238 ++G LS+ +E+ LR+F++ ++ D + SRGF V F ++ A+ Sbjct: 12 FIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARP 71 Query: 237 SELRGRPVKIAYAI 196 + GR V+ A+ Sbjct: 72 HTIDGRVVEPKRAV 85
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 42.7 bits (99), Expect = 9e-04 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 +VGN+ +++SE+ + + F + + + +D TG +G+ +F D E+ AV +N Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLN 69 Query: 240 QSELRGRPVKIAY 202 SEL R +++ + Sbjct: 70 NSELGPRKIRVEF 82
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -2 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 P +G S V NL++ S LR F K R+ + D+ T +SRGF V F D Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66 Query: 267 SLEKAV-GMNQSELRGRPVKIAYAIINR 187 E A+ M+ + L GR +++ A R Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYGR 94
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 YVG L+ + +K L F I I+ +D T RGF V+FE E A+ MN Sbjct: 9 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68 Query: 240 QSELRGRPVKIAYA 199 +SEL GR +++ A Sbjct: 69 ESELFGRTIRVNLA 82
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 YVG L+ + +K L F I I+ +D T RGF V+FE E A+ MN Sbjct: 9 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68 Query: 240 QSELRGRPVKIAYA 199 +SEL GR +++ A Sbjct: 69 ESELFGRTIRVNLA 82
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 5/105 (4%) Frame = -2 Query: 483 SSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGD 307 S RQ+ + + P+ C+ + L+ N +++ +R+ F K I I+ ID T Sbjct: 88 SRDRQRMRQARDHPQA-SRCIGVF--GLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHR 144 Query: 306 SRGFCHVDFED--DESLEK--AVGMNQSELRGRPVKIAYAIINRA 184 SRGFC + FE+ D + K GM E+ GR +++ Y+I RA Sbjct: 145 SRGFCFIYFENLGDARVAKDACTGM---EVDGRRIRVDYSITQRA 186
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -2 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 P +G S V NL++ S LR F K R+ + D+ T +SRGF V F D Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 267 SLEKAV-GMNQSELRGRPVKIAYAIINR 187 E A+ M+ + L GR +++ A R Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMARYGR 93
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -2 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 P +G S V NL++ S LR F K R+ + D+ T +SRGF V F D Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 267 SLEKAV-GMNQSELRGRPVKIAYAIINR 187 E A+ M+ + L GR +++ A R Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMARYGR 93
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -2 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 P +G S V NL++ S LR F K R+ + D+ T +SRGF V F D Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 267 SLEKAV-GMNQSELRGRPVKIAYAIINR 187 E A+ M+ + L GR +++ A R Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMARYGR 93
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -2 Query: 444 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 P +G S V NL++ S LR F K R+ + D+ T +SRGF V F D Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 267 SLEKAV-GMNQSELRGRPVKIAYAIINR 187 E A+ M+ + L GR +++ A R Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMARYGR 93
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 ++ N+S+ SE+D R F + + AID RTG S+GF +V F E +A ++ Sbjct: 313 FIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLD 372 Query: 240 QSELRGRPVKI 208 + +GR + I Sbjct: 373 KQIFQGRLLHI 383 Score = 31.2 bits (69), Expect = 2.7 Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 2/65 (3%) Frame = -2 Query: 387 SEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELRGRPV 214 +E+ LR+FF K + ++ + KR G+SR F + ++ ++ E+AV N+S + + Sbjct: 14 TEEKLREFFSKQGDVTDVKL-MKKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARI 72 Query: 213 KIAYA 199 ++ +A Sbjct: 73 EVEFA 77
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRI-ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 Y+GNL+ ++E D+ F + + + D+ TG+S+GF ++ +ED S AV +N Sbjct: 34 YIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNLN 93 Query: 240 QSELRGRPVKI 208 ++ GR +KI Sbjct: 94 GFKIGGRALKI 104
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 Y+G LS E L+D F S + + R +K TG SRG+ V+F ++S A+ MN Sbjct: 34 YIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMN 93 Query: 240 QSELRGRPVKIAYA 199 EL G + + A Sbjct: 94 GQELNGFNISVNVA 107
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 241 +VG LS++ +E+ L F K +I+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68 Query: 240 QSELRGRPVKIAYA 199 + GR +++ A Sbjct: 69 GKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 241 +VG LS++ +E+ L F K +I+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68 Query: 240 QSELRGRPVKIAYA 199 + GR +++ A Sbjct: 69 GKSVDGRQIRVDQA 82
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA-VGMN 241 ++ N+ ++ +E+D + F + + A+D RTG S+GF +V F+D E A + ++ Sbjct: 304 FLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELD 363 Query: 240 QSELRGRPVKIAYAIINRA*RLSSW 166 + +GR + I A + RL + Sbjct: 364 KQIFQGRLLHILPADAKKTHRLDEF 388
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 40.8 bits (94), Expect = 0.003 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 1/136 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 R FVT+ + E A ++ + + T KR E + P Sbjct: 48 RCFGFVTYSNVEEADAAMAASPHAVDGN---------TVELKRAVSREDSARPGAHAKVK 98 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 +VG L +++E DL + F + DK++G RGF V F++ ++ +KA + Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158 Query: 243 NQSELRGRPVKIAYAI 196 ++G V++ A+ Sbjct: 159 KFHPIQGHRVEVKKAV 174
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 40.8 bits (94), Expect = 0.003 Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Frame = -2 Query: 516 FMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIAS 340 F+R+ + + K K F+S P ++G+L ++E+ L+ FK S Sbjct: 67 FLRINNNK--SGHKNGKLKSFESKKLVP-----LFIGDLHETVTEETLKGIFKKYPSFVS 119 Query: 339 IRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYAIIN 190 + +D T S G +++FED E EKA+ +N +++ G+ ++I ++ N Sbjct: 120 AKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRN 170
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 40.8 bits (94), Expect = 0.003 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Frame = -2 Query: 501 RCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAI 325 R R SS+ +++ + + C+ + L+ N S+ +R+ F K I I+ I Sbjct: 73 RHRSGRSSRDRERMHKSREHPQASRCIGVF--GLNTNTSQHKVRELFNKYGPIERIQMVI 130 Query: 324 DKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYAIINRA 184 D +T SRGFC + FE A + E+ GR +++ ++I RA Sbjct: 131 DAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRA 178
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 40.4 bits (93), Expect = 0.004 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = -2 Query: 444 PEKPDGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 P D S +VGNL + E+ L + F I +R D +T +GF +V F+D + Sbjct: 272 PAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQ 331 Query: 267 SLEKAVGMNQSELRGR 220 S+ KA+ +N+ ++ + Sbjct: 332 SVNKALLLNEKPMKSQ 347
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 241 +VG LS++ +E+ L F K +I+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68 Query: 240 QSELRGRPVKIAYA 199 + GR +++ A Sbjct: 69 GKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 241 +VG LS++ +E+ L F K +I+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68 Query: 240 QSELRGRPVKIAYA 199 + GR +++ A Sbjct: 69 GKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 241 +VG LS++ +E+ L F K +I+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68 Query: 240 QSELRGRPVKIAYA 199 + GR +++ A Sbjct: 69 GKSVDGRQIRVDQA 82
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 10/93 (10%) Frame = -2 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIAS---------IRFAIDKRTGDSRGF 295 DP++ + YV L+ N++ DL DFFK + I +DK TG +G Sbjct: 352 DPDEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 411 Query: 294 CHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 199 V +ED + + AV + + +G +K++ A Sbjct: 412 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 444
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 40.4 bits (93), Expect = 0.004 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 11/107 (10%) Frame = -2 Query: 495 RITASSKRQKKT--------EFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSS--RI 346 R T + KR++K E S+P K A++ N+ +++ + L+D K + Sbjct: 40 RPTQNEKRKEKNIKRGGNRFEPYSNPTKR---YRAFITNIPFDVKWQSLKDLVKEKVGEV 96 Query: 345 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELRGRPVKI 208 + +D G SRG V+F+ +ES++KA +N+ L GRP+K+ Sbjct: 97 TYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 142
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 40.0 bits (92), Expect = 0.006 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Frame = -2 Query: 423 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 ++ Y+GNL+W +++DL D +S + + I+F ++ G S+GF V D S K Sbjct: 81 IALYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKL 140 Query: 252 VG-MNQSELRGR 220 + +++ EL G+ Sbjct: 141 MDLLSKRELHGQ 152
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 40.0 bits (92), Expect = 0.006 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 Y+G++ + E LR++F + +R + K+TG+S+G+ +V+FE DE Sbjct: 44 YIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDE 93
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSR-IASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 + +V L+ ++ ++L DFF+ + + + DK +G S+G +V+F ++S++ A+ + Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIAL 300 Query: 243 NQSELRGRPV 214 + L G PV Sbjct: 301 SGKRLLGLPV 310
>NOP12_DEBHA (Q6BTS9) Nucleolar protein 12| Length = 462 Score = 39.7 bits (91), Expect = 0.008 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Frame = -2 Query: 591 AFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSA 415 A+V F E +LK + +L+ + + +RV+ + P D + Sbjct: 224 AYVVFAEKEPSLKCVPKLNATEFEHAHLRVDHV---------------AHPAPKDNKRTI 268 Query: 414 YVGNLSWNISEKDLRDFFKSSR---IASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 +VGNL + E+ L +F S + S+R D +T +GF V F+D S+ K++ + Sbjct: 269 FVGNLDFEEKEETLWRYFNSKTDNDVESVRVIRDAKTNVGKGFALVQFKDTLSVNKSLLL 328 Query: 243 NQSEL 229 N + Sbjct: 329 NDKPM 333
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 39.7 bits (91), Expect = 0.008 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Frame = -2 Query: 468 KKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFC 292 +KT+ + EK + ++ N+ + E+D R F + + A+D RTG S+GF Sbjct: 330 QKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFA 389 Query: 291 HVDFEDDESLEKA-VGMNQSELRGRPVKI 208 +V F+D ++ A V +++ +GR + I Sbjct: 390 YVLFKDSKNAVNAYVELDKQIFQGRLLHI 418
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 39.7 bits (91), Expect = 0.008 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQS 235 YVGNL ++ EK++ D F + I++ +D ++G F V+FED E AV Sbjct: 12 YVGNLPGDVREKEVEDIF--HKYGRIKY-VDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68 Query: 234 -ELRGRPVKIAY 202 E GR +++ + Sbjct: 69 YEFDGRRIRVEF 80
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 39.3 bits (90), Expect = 0.010 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 444 PEKPDGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 P D S +VGNL + E+ L + F I +R D +T +GF +V F+D + Sbjct: 352 PSPHDKRRSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQ 411 Query: 267 SLEKAVGMNQSEL 229 S+ KA+ +++ ++ Sbjct: 412 SVSKALLLHEKKI 424
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 39.3 bits (90), Expect = 0.010 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Frame = -2 Query: 417 AYVGNLSWNISEKDLRDFFKSS--RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG- 247 A++ N+ +++ + L+D K + + +D G SRG V+F+ +ES++KA Sbjct: 71 AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEV 129 Query: 246 MNQSELRGRPVKI 208 +N+ L GRP+K+ Sbjct: 130 LNKHSLSGRPLKV 142
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 39.3 bits (90), Expect = 0.010 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Frame = -2 Query: 417 AYVGNLSWNISEKDLRDFFKSS--RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG- 247 A++ N+ +++ + L+D K + + +D G SRG V+F+ +ES++KA Sbjct: 72 AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEV 130 Query: 246 MNQSELRGRPVKI 208 +N+ L GRP+K+ Sbjct: 131 LNKHSLSGRPLKV 143
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 38.9 bits (89), Expect = 0.013 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 15/146 (10%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITA-------------SSKRQKK 463 RG FV FE A ++ ELDG ++ + + +E R + SS+R + Sbjct: 37 RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN 96 Query: 462 TEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVD 283 + P + + L V NLS +S +DL+DF + + + FA R + G V+ Sbjct: 97 DRRNAPPVRTENRL--IVENLSSRVSWQDLKDFMRQA--GEVTFADAHRPKLNEGV--VE 150 Query: 282 FEDDESLEKAV-GMNQSELRGRPVKI 208 F L+ A+ ++ E+ GR +K+ Sbjct: 151 FASYGDLKNAIEKLSGKEINGRKIKL 176 Score = 30.8 bits (68), Expect = 3.5 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Frame = -2 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 GC ++G L+ EKD+ FFK RI I RGF V+FED + A Sbjct: 3 GC-RVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDA 53 Query: 252 V-GMNQSELRGRPVKIAYA 199 V ++ EL V I +A Sbjct: 54 VYELDGKELCSERVTIEHA 72
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 38.9 bits (89), Expect = 0.013 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Frame = -2 Query: 450 SDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED 274 +D + +VG++ +E+++R +F+ + + DKRTG +G C V + Sbjct: 111 TDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT 170 Query: 273 DESLEKAVGM--NQSELRG--RPVKIAYA 199 + ++A+ NQ L G PV++ YA Sbjct: 171 SKDADRAIRALHNQITLPGGTGPVQVRYA 199
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 265 ++ NL + E+D R F + + I+ +TG +GF HV FED E+ Sbjct: 304 FLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPEN 354
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 38.9 bits (89), Expect = 0.013 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 15/146 (10%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITA-------------SSKRQKK 463 RG FV FE A ++ ELDG ++ + + +E R + SS+R + Sbjct: 37 RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN 96 Query: 462 TEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVD 283 + P + + L V NLS +S +DL+DF + + + FA R + G V+ Sbjct: 97 DRRNAPPVRTENRL--IVENLSSRVSWQDLKDFMRQA--GEVTFADAHRPKLNEGV--VE 150 Query: 282 FEDDESLEKAV-GMNQSELRGRPVKI 208 F L+ A+ ++ E+ GR +K+ Sbjct: 151 FASYGDLKNAIEKLSGKEINGRKIKL 176 Score = 30.8 bits (68), Expect = 3.5 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Frame = -2 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 GC ++G L+ EKD+ FFK RI I RGF V+FED + A Sbjct: 3 GC-RVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDA 53 Query: 252 V-GMNQSELRGRPVKIAYA 199 V ++ EL V I +A Sbjct: 54 VYELDGKELCSERVTIEHA 72
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 38.5 bits (88), Expect = 0.017 Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 Y+G++ ++ E L+++F + +R + K+TG+S+G+ +V++E DE Sbjct: 44 YIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDE 93
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 38.5 bits (88), Expect = 0.017 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%) Frame = -2 Query: 447 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIAS---------IRFAIDKRTGDSRGF 295 DP++ + YV L+ +++ DL DFFK + I +DK TG +G Sbjct: 353 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 412 Query: 294 CHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 199 V +ED + + AV + + +G +K++ A Sbjct: 413 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 445
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 38.5 bits (88), Expect = 0.017 Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 20/156 (12%) Frame = -2 Query: 573 SDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEF-QSDPEKPDGCLSA------ 415 +D++A D + NR +R++ T SK+Q++ + Q PE+ + S Sbjct: 262 TDDMAKDEAVSDLDWLKNRRVRIKDGADTPVSKQQQQPDTEQQQPEETEVETSQESEEEK 321 Query: 414 -----------YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED- 274 ++ N+ + +E D R F + + A+D RTG S+GF +V F++ Sbjct: 322 SLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNA 381 Query: 273 DESLEKAVGMNQSELRGRPVKIAYAIINRA*RLSSW 166 D + V +++ +GR + I A ++ +L + Sbjct: 382 DNAATAFVELDKQIFQGRLLHILPADAKKSHKLDEF 417
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 38.5 bits (88), Expect = 0.017 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 241 ++G L++ +E L F K RI+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 8 FIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMN 67 Query: 240 QSELRGRPVKIAYA 199 + GR +++ A Sbjct: 68 GKSVDGRQIRVDQA 81
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 38.1 bits (87), Expect = 0.022 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 247 S YVG+L +++E L D F + + ++R D T S G+ +V+F + E +A+ Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMES 104 Query: 246 MNQSELRGRPVKIAYAIINRA*RLS 172 +N + +R RP++I + + + RLS Sbjct: 105 LNYAPIRDRPIRIMLSNRDPSTRLS 129
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 37.7 bits (86), Expect = 0.029 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 268 YVG+L + E L+ +F+ ++ +R + K+TG S+G+ V+FE DE Sbjct: 48 YVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDE 97
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 37.7 bits (86), Expect = 0.029 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MN 241 YVG L +SE L + ++ + S+ D+ T + +GF V+F +E + A+ +N Sbjct: 16 YVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILN 75 Query: 240 QSELRGRPVKI 208 +L G+P+K+ Sbjct: 76 MIKLYGKPIKV 86
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 37.7 bits (86), Expect = 0.029 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Frame = -2 Query: 447 DPE-KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED 274 DP + G + ++ NL +I K L D F S I S + A+D +G S+G+ V + + Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYAN 173 Query: 273 DESLEKAV 250 +ES +KA+ Sbjct: 174 EESAQKAI 181 Score = 37.4 bits (85), Expect = 0.038 Identities = 27/120 (22%), Positives = 57/120 (47%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G +G FV + ++E A K++E K+ + ++ + +RQ++ + + Sbjct: 161 GQSKGYGFVQYANEESAQKAIE----KLNGMLLNDKQVYVGPFLRRQERDSTANKTK--- 213 Query: 429 GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 + YV NL+ + ++ DL++ F + + G S+GF V+FE+ + +AV Sbjct: 214 -FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAV 272
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 37.7 bits (86), Expect = 0.029 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 Y+G++ ++ +E+ + D + + +++ D +TG S+G+ ++F D ES AV +N Sbjct: 21 YLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 80 Query: 240 QSELRGRPVKIAYA 199 +L R +K Y+ Sbjct: 81 GYQLGSRFLKCGYS 94
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.029 Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 1/140 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G A+V F+S A +++ ++G ++ NR + V R + + +T ++ Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT------F 198 Query: 423 LSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 + +V N+ +I ++ L++ F I +G S+GF V +E E+ +KAV Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV-- 256 Query: 243 NQSELRGRPVKIAYAIINRA 184 +L G+ + + RA Sbjct: 257 --LDLHGKSIDGKVLYVGRA 274
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.029 Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 1/140 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G A+V F+S A +++ ++G ++ NR + V R + + +T ++ Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT------F 198 Query: 423 LSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 + +V N+ +I ++ L++ F I +G S+GF V +E E+ +KAV Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV-- 256 Query: 243 NQSELRGRPVKIAYAIINRA 184 +L G+ + + RA Sbjct: 257 --LDLHGKSIDGKVLYVGRA 274
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.029 Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 1/140 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G A+V F+S A +++ ++G ++ NR + V R + + +T ++ Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT------F 198 Query: 423 LSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 + +V N+ +I ++ L++ F I +G S+GF V +E E+ +KAV Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV-- 256 Query: 243 NQSELRGRPVKIAYAIINRA 184 +L G+ + + RA Sbjct: 257 --LDLHGKSIDGKVLYVGRA 274
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.029 Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 1/140 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G A+V F+S A +++ ++G ++ NR + V R + + +T ++ Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT------F 198 Query: 423 LSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 + +V N+ +I ++ L++ F I +G S+GF V +E E+ +KAV Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV-- 256 Query: 243 NQSELRGRPVKIAYAIINRA 184 +L G+ + + RA Sbjct: 257 --LDLHGKSIDGKVLYVGRA 274
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.029 Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 1/140 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G A+V F+S A +++ ++G ++ NR + V R + + +T ++ Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT------F 198 Query: 423 LSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 + +V N+ +I ++ L++ F I +G S+GF V +E E+ +KAV Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV-- 256 Query: 243 NQSELRGRPVKIAYAIINRA 184 +L G+ + + RA Sbjct: 257 --LDLHGKSIDGKVLYVGRA 274
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.029 Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 1/140 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 424 +G A+V F+S A +++ ++G ++ NR + V R + + +T ++ Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT------F 198 Query: 423 LSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 244 + +V N+ +I ++ L++ F I +G S+GF V +E E+ +KAV Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV-- 256 Query: 243 NQSELRGRPVKIAYAIINRA 184 +L G+ + + RA Sbjct: 257 --LDLHGKSIDGKVLYVGRA 274
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 241 Y+G LS+N+ EKD++ FF R+ + G+ V+FED + AV +N Sbjct: 5 YIGRLSYNVREKDIQRFFSGYGRLLEVDL--------KNGYGFVEFEDSRDADDAVYELN 56 Query: 240 QSELRGRPVKIAYA 199 EL G V + +A Sbjct: 57 GKELCGERVIVEHA 70
>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| (FTP-3) Length = 449 Score = 37.7 bits (86), Expect = 0.029 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G G AFV ES+E +L+ D +G+R++ V + K T P PD Sbjct: 51 GRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHT----GPNSPD 106 Query: 429 GCLSAYV--GNLSWNISEKDLRDFFKSSRIA--SIRFAIDKRTGDSRGFCHVDFEDDESL 262 +V L + S++++ FF I + +D + G S G V F E Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTGEAFVQFASQEIA 165 Query: 261 EKAVGMNQSELRGRPVKI 208 EKA+ ++ + R ++I Sbjct: 166 EKALKKHKERIGHRYIEI 183 Score = 31.2 bits (69), Expect = 2.7 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 436 G G AFV F S E+A K+L+ +IG+R++ + + SS+ + +T + DP + Sbjct: 149 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK-----SSRAEVRTHY--DPPR 199
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 37.7 bits (86), Expect = 0.029 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 238 Y+G L+ +SEKD+ FF+ IR + K GF V+F+D E AV +N Sbjct: 6 YIGRLTSRVSEKDIEHFFRG--YGQIRDVLLK-----NGFGFVEFDDKRDAEDAVHDLNG 58 Query: 237 SELRGRPVKIAYA 199 EL G V + Y+ Sbjct: 59 KELGGERVILDYS 71
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Frame = -2 Query: 456 FQSDPEKPDGCL----SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 292 F+ D E+ + L + YVGNLS+ +E+ + + F KS I I +DK + GFC Sbjct: 25 FRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFC 84 Query: 291 HVDFEDDESLEKAV 250 V++ E A+ Sbjct: 85 FVEYYSRADAENAM 98
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Frame = -2 Query: 456 FQSDPEKPDGCL----SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 292 F+ D E+ + L + YVGNLS+ +E+ + + F KS I I +DK + GFC Sbjct: 25 FRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFC 84 Query: 291 HVDFEDDESLEKAV 250 V++ E A+ Sbjct: 85 FVEYYSRADAENAM 98
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Frame = -2 Query: 456 FQSDPEKPDGCL----SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 292 F+ D E+ + L + YVGNLS+ +E+ + + F KS I I +DK + GFC Sbjct: 25 FRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFC 84 Query: 291 HVDFEDDESLEKAV 250 V++ E A+ Sbjct: 85 FVEYYSRADAENAM 98
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 37.4 bits (85), Expect = 0.038 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 238 ++G L+ +EK L+ F S I RT SRGF + FE+ + A MN Sbjct: 11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG 70 Query: 237 SELRGRPVKIAYA 199 L G+ +K+ A Sbjct: 71 KSLHGKAIKVEQA 83
>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 37.4 bits (85), Expect = 0.038 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G G AFV ES++ +L+ D +G+R++ V + K T P PD Sbjct: 50 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHT----GPNSPD 105 Query: 429 GCLSAYV--GNLSWNISEKDLRDFFKSSRIA--SIRFAIDKRTGDSRGFCHVDFEDDESL 262 +V L + S++++ FF I I +D + G S G V F E Sbjct: 106 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTGEAFVQFASQEIA 164 Query: 261 EKAVGMNQSELRGRPVKI 208 EKA+ ++ + R ++I Sbjct: 165 EKALKKHKERIGHRYIEI 182 Score = 31.2 bits (69), Expect = 2.7 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 436 G G AFV F S E+A K+L+ +IG+R++ + + SS+ + +T + DP + Sbjct: 148 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK-----SSRAEVRTHY--DPPR 198
>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 37.4 bits (85), Expect = 0.038 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G G AFV ES++ +L+ D +G+R++ V + K T P PD Sbjct: 50 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHT----GPNSPD 105 Query: 429 GCLSAYV--GNLSWNISEKDLRDFFKSSRIA--SIRFAIDKRTGDSRGFCHVDFEDDESL 262 +V L + S++++ FF I I +D + G S G V F E Sbjct: 106 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTGEAFVQFASQEIA 164 Query: 261 EKAVGMNQSELRGRPVKI 208 EKA+ ++ + R ++I Sbjct: 165 EKALKKHKERIGHRYIEI 182 Score = 31.2 bits (69), Expect = 2.7 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 436 G G AFV F S E+A K+L+ +IG+R++ + + SS+ + +T + DP + Sbjct: 148 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK-----SSRAEVRTHY--DPPR 198
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 37.0 bits (84), Expect = 0.049 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 247 + +VG + + E ++R FF +R S++ I RTG S+G+ V F +D ++K V Sbjct: 41 TVFVGGIDVRMDETEIRSFF--ARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV- 97 Query: 246 MNQSELRGRPVKIAYAI 196 +Q G+ +K+ AI Sbjct: 98 ESQINFHGKKLKLGPAI 114
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 37.0 bits (84), Expect = 0.049 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Frame = -2 Query: 591 AFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAY 412 A++ F++ + +L L+G MRV+ + P D + Sbjct: 233 AYIVFKNVKSVKGALTLNGSVFKGFHMRVDSV---------------AHPGAQDHKRCVF 277 Query: 411 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 241 VG L + E+ L + F S + +R D +T +GF +V F+D S+E+A+ +N Sbjct: 278 VGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALLLN 335
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 37.0 bits (84), Expect = 0.049 Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDF-EDDESLEKAVGMN 241 ++ N+ ++ +E D + F + + A+D RTG+S+GF +V F + +E+++ + ++ Sbjct: 328 FLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIELD 387 Query: 240 QSELRGRPVKIAYA 199 + +GR + I A Sbjct: 388 KQIFQGRLLHILAA 401
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 36.6 bits (83), Expect = 0.064 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Frame = -2 Query: 621 SRTPGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVE 502 ++ G RGLAFVTF S+EVA ++L LDG N +RVE Sbjct: 226 NKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVE 266
>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (SR-related protein of 86 kDa) Length = 494 Score = 36.6 bits (83), Expect = 0.064 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = -2 Query: 447 DPEKPDGCL-SAYVGNLSWNISEKD-LRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFE 277 DP K D + YVGNL+ + D L +FFK + +R A D+ T +R F V+F Sbjct: 60 DPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDE-TQPTR-FAFVEFA 117 Query: 276 DDESLEKAVGMNQSELRGRPVKIAYA 199 D S+ +A+ N RP+KI ++ Sbjct: 118 DQNSVPRALAFNGVMFGDRPLKINHS 143
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 36.6 bits (83), Expect = 0.064 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = -2 Query: 447 DPEKPDGCL-SAYVGNLSWNISEKD-LRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFE 277 DP K D + YVGNL+ + D L +FFK + +R A D+ T +R F V+F Sbjct: 60 DPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDE-TQPTR-FAFVEFA 117 Query: 276 DDESLEKAVGMNQSELRGRPVKIAYA 199 D S+ +A+ N RP+KI ++ Sbjct: 118 DQNSVPRALAFNGVMFGDRPLKINHS 143
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (Splicing regulatory protein 508) (SRrp508) Length = 508 Score = 36.6 bits (83), Expect = 0.064 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = -2 Query: 447 DPEKPDGCL-SAYVGNLSWNISEKD-LRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFE 277 DP K D + YVGNL+ + D L +FFK + +R A D+ T +R F V+F Sbjct: 57 DPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDE-TQPTR-FAFVEFA 114 Query: 276 DDESLEKAVGMNQSELRGRPVKIAYA 199 D S+ +A+ N RP+KI ++ Sbjct: 115 DQNSVPRALAFNGVMFGDRPLKINHS 140
>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| Length = 449 Score = 36.6 bits (83), Expect = 0.064 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G G AFV ES++ +L+ D +G+R++ V + K T P PD Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHT----GPNSPD 106 Query: 429 GCLSAYV--GNLSWNISEKDLRDFFKSSRIA--SIRFAIDKRTGDSRGFCHVDFEDDESL 262 +V L + S++++ FF I + +D + G S G V F E Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTGEAFVQFASQEIA 165 Query: 261 EKAVGMNQSELRGRPVKI 208 EKA+ ++ + R ++I Sbjct: 166 EKALKKHKERIGHRYIEI 183 Score = 31.2 bits (69), Expect = 2.7 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 436 G G AFV F S E+A K+L+ +IG+R++ + + SS+ + +T + DP + Sbjct: 149 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK-----SSRAEVRTHY--DPPR 199
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 36.6 bits (83), Expect = 0.064 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 247 + +VG + + E ++R FF +R S++ I RTG S+G+ V F +D ++K V Sbjct: 41 TVFVGGIDVRMDETEIRSFF--ARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIV- 97 Query: 246 MNQSELRGRPVKIAYAI 196 +Q G+ +K+ AI Sbjct: 98 ESQINFHGKKLKLGPAI 114
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 36.6 bits (83), Expect = 0.064 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 247 + +VG + + E ++R FF +R S++ I RTG S+G+ V F +D ++K V Sbjct: 41 TVFVGGIDVRMDETEIRSFF--ARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIV- 97 Query: 246 MNQSELRGRPVKIAYAI 196 +Q G+ +K+ AI Sbjct: 98 ESQINFHGKKLKLGPAI 114
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 36.2 bits (82), Expect = 0.084 Identities = 21/75 (28%), Positives = 40/75 (53%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 241 + +VG + ++E ++R +F+ I RTG S+G+ V F D+ ++K V + Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIV-ES 95 Query: 240 QSELRGRPVKIAYAI 196 Q + G+ +K+ AI Sbjct: 96 QISVHGKRLKLGPAI 110
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 36.2 bits (82), Expect = 0.084 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%) Frame = -2 Query: 486 ASSKRQKKTEFQSDPEKPDGCLSA----YVGNLSWNISEKDLRDFF-KSSRIASIRFAID 322 A R+ DPE + ++ NLS+ ++E D+R+ F K + + +D Sbjct: 283 AEDSREMAATSTHDPESAISLIEKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLD 342 Query: 321 KRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAIINRA*RLSSW 166 + G S+GF + +E S A + + +GR V I A R +L + Sbjct: 343 SK-GHSKGFAMIRYEKPASALAAFQTDGTVFQGRIVHILPAAAKRENKLDEF 393
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 36.2 bits (82), Expect = 0.084 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 247 + +VG + + E ++R FF +R S++ I RTG S+G+ V F +D ++K V Sbjct: 41 TVFVGGIDVRMDETEIRGFF--ARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIV- 97 Query: 246 MNQSELRGRPVKIAYAI 196 +Q G+ +K+ AI Sbjct: 98 ESQINFHGKKLKLGPAI 114
>COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 598 Score = 36.2 bits (82), Expect = 0.084 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 441 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 265 E+P GC + +VG L N +E+ + + F+ I +IR + FCH+ F ++ Sbjct: 93 ERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR-------KSKKNFCHIRFAEEYM 145 Query: 264 LEKAVGMNQSELR 226 ++KA+ ++ +R Sbjct: 146 VDKALYLSGYRIR 158
>CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity factor 6| Length = 548 Score = 36.2 bits (82), Expect = 0.084 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Frame = -2 Query: 423 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 ++ Y+GNL+W +++DL D S + I I+F ++ G S+GF + + S +K Sbjct: 81 IALYIGNLTWWTTDEDLTDAVHSLGVNDILEIKFFENRANGQSKGFALICVSSESSSKKL 140 Query: 252 VGM 244 + + Sbjct: 141 MDL 143
>COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 610 Score = 36.2 bits (82), Expect = 0.084 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 441 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 265 E+P GC + +VG L N +E+ + + F+ I +IR + FCH+ F ++ Sbjct: 122 ERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR-------KSKKNFCHIRFAEEYM 174 Query: 264 LEKAVGMNQSELR 226 ++KA+ ++ +R Sbjct: 175 VDKALYLSGYRIR 187
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 35.8 bits (81), Expect = 0.11 Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 19/148 (12%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVE------RCRI----------TAS 481 G R FV F S++ +L + GY R +R+ R I T++ Sbjct: 221 GLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTST 280 Query: 480 SKRQKKTEFQS-DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGD 307 S RQ + S DP + +VG L+ N+SEKDL+ F+ RI +I+ K G Sbjct: 281 SNRQPNQDLCSMDPLNT----TVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCG- 335 Query: 306 SRGFCHVDFEDDESLEKAVGMNQSELRG 223 V + + + EKA+ Q L G Sbjct: 336 -----FVQYSEKSAAEKAINTMQGALVG 358
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 35.8 bits (81), Expect = 0.11 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 247 S +V N++ + +DLR +F + I + +D T RGF +V FED E A+ Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 246 MNQSELRGRPVKIAYA 199 +++ + GR ++I +A Sbjct: 71 LDRKWICGRQIEIQFA 86
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 35.8 bits (81), Expect = 0.11 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 247 S +V N++ + +DLR +F + I + +D T RGF +V FED E A+ Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 246 MNQSELRGRPVKIAYA 199 +++ + GR ++I +A Sbjct: 71 LDRKWICGRQIEIQFA 86
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 35.8 bits (81), Expect = 0.11 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 247 S ++ N++ +DLR +F + I + +D T RGF +V FED E A+ Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70 Query: 246 MNQSELRGRPVKIAYA 199 +N+ + GR ++I +A Sbjct: 71 LNRKWVCGRQIEIQFA 86
>LA_MOUSE (P32067) Lupus La protein homolog (La ribonucleoprotein) (La| autoantigen homolog) Length = 415 Score = 35.8 bits (81), Expect = 0.11 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 22/159 (13%) Frame = -2 Query: 603 FRGLAFVTFESDEVALKSLELDGYKIGNRFMRV--------------ERCRITASSKRQK 466 F+G F F+S + A K +E+ G K + + + ++ ++ A K ++ Sbjct: 150 FKGSIFAVFDSIQSAKKFVEIPGQKYKDTNLLILFKEDYFAKKNEERKQSKVEAKLKAKQ 209 Query: 465 KTEFQSDP--------EKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTG 310 + E + P E GCL + G+L +DL F S I++ +D G Sbjct: 210 EHEGRHKPGSTETRALEGKMGCLLKFSGDLDDQTCREDLHFLF--SNHGEIKW-VDFARG 266 Query: 309 DSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAII 193 G + E+LEKA N L R K+ + ++ Sbjct: 267 AKEGIILFKEKAKEALEKARNANNGNLLLRNKKVTWKVL 305
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = -2 Query: 432 DGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 256 D + V NLS + E++LRD F+ I + A DK TG ++GF V + D + K Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIK 258 Query: 255 A 253 A Sbjct: 259 A 259
>MODU_DROME (P13469) DNA-binding protein modulo| Length = 542 Score = 35.8 bits (81), Expect = 0.11 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Frame = -2 Query: 594 LAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLS 418 LAFVTF+ + A K+L +LDG + ++ R + S + + Sbjct: 380 LAFVTFKQSDAATKALAQLDGKTVNKFEWKLHRFERSTSGR------------------A 421 Query: 417 AYVGNLSWNISEKDLRDFFK-SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 241 V NL+ + +E DLR F S I SI K V F+DDE K+ N Sbjct: 422 ILVTNLTSDATEADLRKVFNDSGEIESIIMLGQKAV--------VKFKDDEGFCKSFLAN 473 Query: 240 QSELRGRPVKI 208 +S + P+ I Sbjct: 474 ESIVNNAPIFI 484
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 35.4 bits (80), Expect = 0.14 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = -2 Query: 402 LSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 L W +E+DL+D+F + + ++ D +TG S+GF V F + E+ K + Sbjct: 111 LPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162
>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I| Length = 576 Score = 35.4 bits (80), Expect = 0.14 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 6/87 (6%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQK----KTEFQSD 445 G FRGLAF F S E A ++ L+GY+I R +RVE R ++R++ K E ++ Sbjct: 270 GVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERVERGKQEKRAV 329 Query: 444 PEKPDGCLSAY-VGNLSWNISEKDLRD 367 E+ + S + V N+ I + DL D Sbjct: 330 EERKNQLKSPFSVANIGAGI-DFDLND 355
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 35.4 bits (80), Expect = 0.14 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 9/95 (9%) Frame = -2 Query: 510 RVERCRITASSKRQKKTEFQ-------SDPE-KPDGCLSAYVGNLSWNISEKDLR-DFFK 358 R+ER R +RQ++ E + +DP + D + +V ++++ +E LR +F Sbjct: 66 RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV 125 Query: 357 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 I I KR+G RG+ +++E + + A Sbjct: 126 YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Frame = -2 Query: 423 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 ++ Y+GNL+W +++DL + S + I I+F ++ G S+GF V + S +K Sbjct: 81 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 140 Query: 252 VG-MNQSELRGR 220 + + + EL G+ Sbjct: 141 MDLLPKRELHGQ 152
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Frame = -2 Query: 423 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 ++ Y+GNL+W +++DL + S + I I+F ++ G S+GF V + S +K Sbjct: 81 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 140 Query: 252 VG-MNQSELRGR 220 + + + EL G+ Sbjct: 141 MDLLPKRELHGQ 152
>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Frame = -2 Query: 423 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 ++ Y+GNL+W +++DL + S + I I+F ++ G S+GF V + S +K Sbjct: 81 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 140 Query: 252 VG-MNQSELRGR 220 + + + EL G+ Sbjct: 141 MDLLPKRELHGQ 152
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 35.4 bits (80), Expect = 0.14 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 9/95 (9%) Frame = -2 Query: 510 RVERCRITASSKRQKKTEFQ-------SDPE-KPDGCLSAYVGNLSWNISEKDLR-DFFK 358 R+ER R +RQ++ E + +DP + D + +V ++++ +E LR +F Sbjct: 66 RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV 125 Query: 357 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 I I KR+G RG+ +++E + + A Sbjct: 126 YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 35.0 bits (79), Expect = 0.19 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -2 Query: 450 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFED 274 +D +G YVGNL ++ EKDL D F+K RI I K F V FED Sbjct: 5 ADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFED 61 Query: 273 DESLEKAV 250 E A+ Sbjct: 62 PRDAEDAI 69
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 35.0 bits (79), Expect = 0.19 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -2 Query: 450 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFED 274 +D +G YVGNL ++ EKDL D F+K RI I K F V FED Sbjct: 5 ADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFED 61 Query: 273 DESLEKAV 250 E A+ Sbjct: 62 PRDAEDAI 69
>LA_HUMAN (P05455) Lupus La protein (Sjoegren syndrome type B antigen) (SS-B)| (La ribonucleoprotein) (La autoantigen) Length = 408 Score = 35.0 bits (79), Expect = 0.19 Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 23/160 (14%) Frame = -2 Query: 603 FRGLAFVTFESDEVALKSLELDGYKI------------------GNRFMRVERCRITASS 478 F+G FV F+S E A K +E G K R ++ A Sbjct: 150 FKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQ 209 Query: 477 KRQKKTEFQSDPEKPD-----GCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRT 313 +++ K + + D E GCL + G+L +DL F S I++ ID Sbjct: 210 EQEAKQKLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILF--SNHGEIKW-IDFVR 266 Query: 312 GDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAII 193 G G + E+L KA N L+ R ++ + ++ Sbjct: 267 GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 306
>HNRPF_MACFA (Q60HC3) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)| Length = 414 Score = 35.0 bits (79), Expect = 0.19 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 4/138 (2%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G G AFV S++ +L+ D +G+R++ V + T K S P D Sbjct: 50 GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLK----HSGPNSAD 105 Query: 429 GCLSAYV--GNLSWNISEKDLRDFFKSSRIA--SIRFAIDKRTGDSRGFCHVDFEDDESL 262 +V L + +++++ FF I I +D G G V F E Sbjct: 106 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELA 164 Query: 261 EKAVGMNQSELRGRPVKI 208 EKA+G ++ + R +++ Sbjct: 165 EKALGKHKERIGHRYIEV 182 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDP 442 G G AFV F S E+A K+L +IG+R++ V + Q++ SDP Sbjct: 148 GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK-------SSQEEVRSYSDP 196
>HNRPF_HUMAN (P52597) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)| (Nucleolin-like protein mcs94-1) Length = 414 Score = 35.0 bits (79), Expect = 0.19 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 4/138 (2%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 430 G G AFV S++ +L+ D +G+R++ V + T K S P D Sbjct: 50 GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLK----HSGPNSAD 105 Query: 429 GCLSAYV--GNLSWNISEKDLRDFFKSSRIA--SIRFAIDKRTGDSRGFCHVDFEDDESL 262 +V L + +++++ FF I I +D G G V F E Sbjct: 106 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELA 164 Query: 261 EKAVGMNQSELRGRPVKI 208 EKA+G ++ + R +++ Sbjct: 165 EKALGKHKERIGHRYIEV 182 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = -2 Query: 609 GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDP 442 G G AFV F S E+A K+L +IG+R++ V + Q++ SDP Sbjct: 148 GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK-------SSQEEVRSYSDP 196
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 35.0 bits (79), Expect = 0.19 Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 6/144 (4%) Frame = -2 Query: 606 NFRGLAFVTFESDEVALKSLELDGYK--IGNRFMRVERCRITASSKR--QKKTEFQSDPE 439 NF L T E D L L+ + Y + +F R++ + + QK+++ + + Sbjct: 246 NFAILEVATPE-DATFLWGLQSESYSNDVFLKFQRIQNYIVPQITPEVSQKRSDDYAKND 304 Query: 438 KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESL 262 D Y+ NL N+ E + + K + S + + G S+GFC +F++ Sbjct: 305 VLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDA 364 Query: 261 EKAV-GMNQSELRGRPVKIAYAII 193 E A+ G++ + G + +A + Sbjct: 365 EVAISGLDGKDTYGNKLHAQFACV 388
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 34.7 bits (78), Expect = 0.24 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAV-GM 244 ++ N+ +++ + ++D + ++ + + G SRG V+F+D+E ++KA+ M Sbjct: 103 FISNIPYDMKWQAIKDLMRE-KVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161 Query: 243 NQSELRGRPVKI 208 N+ +L GRP+ I Sbjct: 162 NKYDLSGRPLNI 173 Score = 31.2 bits (69), Expect = 2.7 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRIASIRFA-IDKRTGDSRGFCHVDFEDDESLEKAVG-MN 241 +V NL ++++ + L++ F S+ + FA I G S+G V F+ ES EKA MN Sbjct: 526 FVRNLPFDLTWQKLKEKF--SQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMN 583 Query: 240 QSELRGRPVKI 208 ++ GR + + Sbjct: 584 GIKISGREIDV 594
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 34.7 bits (78), Expect = 0.24 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAV-GM 244 ++ N+ +++ + ++D + ++ + + G SRG V+F+D+E ++KA+ M Sbjct: 94 FISNIPYDMKWQAIKDLMRE-KVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 152 Query: 243 NQSELRGRPVKI 208 N+ +L GRP+ I Sbjct: 153 NKYDLSGRPLNI 164 Score = 32.0 bits (71), Expect = 1.6 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRIASIRFA-IDKRTGDSRGFCHVDFEDDESLEKAVG-MN 241 +V NL ++++ + L++ F S+ + FA I G S+G V FE ES EKA MN Sbjct: 517 FVRNLPFDLTWQKLKEKF--SQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMN 574 Query: 240 QSELRGRPVKI 208 ++ GR + + Sbjct: 575 GIKISGREIDV 585
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 34.7 bits (78), Expect = 0.24 Identities = 19/97 (19%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Frame = -2 Query: 477 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSR 301 + + E + P++ +V ++ E ++++ F I +I +D+RTG S+ Sbjct: 55 RNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSK 114 Query: 300 GFCHVDFE-DDESLEKAVGMNQSELRGRPVKIAYAII 193 G+ V++E ++L +N +E+ G+ +++ + + Sbjct: 115 GYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 34.7 bits (78), Expect = 0.24 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 247 S Y G+L ++E L D FK + + S+R D+ S G+ +++F + +A+ Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEA 108 Query: 246 MNQSELRGRPVKIAYAIINRA*RLS 172 +N + L RP++I + + + RLS Sbjct: 109 LNYTPLFDRPIRIMLSNRDPSTRLS 133
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 34.7 bits (78), Expect = 0.24 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -2 Query: 450 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFED 274 +D +G YVGNL ++ EKDL D F+K RI I K F V FED Sbjct: 6 ADERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFED 62 Query: 273 DESLEKAV 250 E A+ Sbjct: 63 PRDAEDAI 70
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 247 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 41 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98 Query: 246 MNQSELRGRPVKIAYAI 196 +Q G+ +K+ AI Sbjct: 99 -SQIHFHGKKLKLGPAI 114
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 247 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 206 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 263 Query: 246 MNQSELRGRPVKIAYAI 196 +Q G+ +K+ AI Sbjct: 264 -SQIHFHGKKLKLGPAI 279 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 247 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 41 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98 Query: 246 MNQSELRGRPVKIAYAI 196 +Q G+ +K+ AI Sbjct: 99 -SQIHFHGKKLKLGPAI 114
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 34.3 bits (77), Expect = 0.32 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 17/104 (16%) Frame = -2 Query: 489 TASSKRQKKTEFQSDPEK----------------PDGCLSAYVGNLSWNISEKDLRDFF- 361 T+ K Q++ E +++ E P+ L +V L+ ++DL F Sbjct: 208 TSEDKLQREKEMEAEAEAVTLEMIGDLPFAHVAPPENVL--FVCKLNPVTQDEDLELIFS 265 Query: 360 KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSEL 229 + +I S + DK TGDS + ++F++ ES+EKA Q+ L Sbjct: 266 RFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVL 309
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 247 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 371 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 428 Query: 246 MNQSELRGRPVKIAYAI 196 +Q G+ +K+ AI Sbjct: 429 -SQIHFHGKKLKLGPAI 444 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 247 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 206 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 263 Query: 246 MNQSELRGRPVKIAYAI 196 +Q G+ +K+ AI Sbjct: 264 -SQIHFHGKKLKLGPAI 279 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 247 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 41 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98 Query: 246 MNQSELRGRPVKIAYAI 196 +Q G+ +K+ AI Sbjct: 99 -SQIHFHGKKLKLGPAI 114
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLE---KAVG 247 ++G L +++ E +L+ +F K I IR DK T S+G+ + F+D S + K +G Sbjct: 110 FIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIG 169 Query: 246 MNQSELRGRPVKIAYAIIN 190 ++ RG +K I++ Sbjct: 170 VH----RGIQIKDRICIVD 184
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Frame = -2 Query: 486 ASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFA---IDKR 316 AS ++ K + Q+ E S +V N+ ++ +E+ L F S+ S+++A IDK Sbjct: 273 ASKNKESKRKAQNKRED----FSVFVRNVPYDATEESLAPHF--SKFGSVKYALPVIDKS 326 Query: 315 TGDSRGFCHVDFEDDESLEKAV 250 TG ++G V F+D + + + Sbjct: 327 TGLAKGTAFVAFKDQYTYNECI 348
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 34.3 bits (77), Expect = 0.32 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = -2 Query: 492 ITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKR 316 +T R KK + + + G + Y+G+L +SE + ++ I+ R + KR Sbjct: 26 LTQIQGRTKKPQQKKKEKLNRGVV--YLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKR 83 Query: 315 TGDSRGFCHVDFEDDE 268 TG+S+G+ V+FE ++ Sbjct: 84 TGNSKGYAFVEFESED 99 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = -2 Query: 621 SRTPGNFRGLAFVTFESDEVA-LKSLELDGYKIGNRFM 511 S+ GN +G AFV FES++VA + + +D Y G R + Sbjct: 81 SKRTGNSKGYAFVEFESEDVAKIVAETMDNYLFGERLL 118
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 34.3 bits (77), Expect = 0.32 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 256 +VG + + +E DLR FF ++ R G S+G+ V FE E +K Sbjct: 36 FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQK 88
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 34.3 bits (77), Expect = 0.32 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 256 +VG + + +E DLR FF ++ R G S+G+ V FE E +K Sbjct: 36 FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQK 88
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 247 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 41 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98 Query: 246 MNQSELRGRPVKIAYAI 196 +Q G+ +K+ AI Sbjct: 99 -SQIHFHGKKLKLGPAI 114
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 33.9 bits (76), Expect = 0.42 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = -2 Query: 402 LSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 L W +E+DL+++F + + ++ D +TG S+GF V F + E+ K + Sbjct: 111 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 33.9 bits (76), Expect = 0.42 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 256 +VG + + +E DLR FF ++ R G S+G+ + FE E +K Sbjct: 36 FVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQK 88
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 33.9 bits (76), Expect = 0.42 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = -2 Query: 327 IDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 199 +D +T RGF V+FE+ E A+ MN+SE+ GR +++ A Sbjct: 3 MDYQTEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 33.9 bits (76), Expect = 0.42 Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 4/100 (4%) Frame = -2 Query: 501 RCRITASSKRQKKTEFQSDPEKPDGC-LSAYVGNLSWNISEKDLRDFFKS-SRIASIRFA 328 R R + SK+ K+ E + P ++G L+ N+++ + + F + +I I Sbjct: 111 RRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMP 170 Query: 327 IDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 214 +D+ S+G+ +V+FE E EKA+ M+ ++ G+ + Sbjct: 171 VDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEI 210
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 33.9 bits (76), Expect = 0.42 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDF 280 YVGNLS+ +E+ + + F KS + I +DK + GFC V++ Sbjct: 35 YVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEY 80
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 33.5 bits (75), Expect = 0.54 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Frame = -2 Query: 432 DGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 256 +G S + NLS+ + DL R F + I + DK + S+GF V F + E Sbjct: 16 NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75 Query: 255 AVGMNQSEL-RGRPVKIAYAIINR 187 A+ +L GR +++ A +R Sbjct: 76 ALDRTDGKLVDGRELRVTLAKYDR 99
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 33.5 bits (75), Expect = 0.54 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Frame = -2 Query: 510 RVERCRITASSKRQKKTEFQS---DPEKP-----DGCLSAYVGNLSWNISEKDLR-DFFK 358 R+ER R +RQ+ E + DP D + +V ++++ +E LR +F Sbjct: 66 RMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEV 125 Query: 357 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 253 I I +KR+G RG+ +++E + + A Sbjct: 126 YGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSA 160
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 33.5 bits (75), Expect = 0.54 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Frame = -2 Query: 600 RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 421 RG FVTF +++ + I + T KR + ++ E Sbjct: 64 RGFGFVTFSGKTEVDAAMKQRPHIIDGK---------TVDPKRAVPRDDKNRSESNVSTK 114 Query: 420 SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 YV + + +E L ++F K + +DK T RGF V F+D +S+++ V Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172 Score = 31.2 bits (69), Expect = 2.7 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -2 Query: 438 KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESL 262 +P+ +VG L+ N ++ +R+F+ I I D T SRGF V F + Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77 Query: 261 EKAVGMNQSELRGRPV 214 + A+ + G+ V Sbjct: 78 DAAMKQRPHIIDGKTV 93
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 33.5 bits (75), Expect = 0.54 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -2 Query: 414 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA-VGMNQ 238 +VGNL +++++ L F + R G +RGF V F+D + KA N Sbjct: 33 FVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNG 92 Query: 237 SELRGRPVKIAYA 199 + RPVK++ A Sbjct: 93 KYIGSRPVKLSRA 105
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 33.5 bits (75), Expect = 0.54 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 4/98 (4%) Frame = -2 Query: 489 TASSKRQKKTEFQSDPEK---PDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDK 319 TA S Q DP PDG +V N+ + + DL+ F+ + S I Sbjct: 128 TAGSTNGSAAVTQPDPSTSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFN 187 Query: 318 RTGDSRGFCHVDFEDDESLEKA-VGMNQSELRGRPVKI 208 G S+GF V E + E+A ++ S + GR +++ Sbjct: 188 ERG-SKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 33.1 bits (74), Expect = 0.71 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = -2 Query: 411 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 238 V L ++++++L F++ I + R D +TG S G+ VDF + ++A+ +N Sbjct: 114 VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNG 173 Query: 237 SELRGRPVKIAYA 199 +R + +K++YA Sbjct: 174 ITVRNKRLKVSYA 186
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 33.1 bits (74), Expect = 0.71 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Frame = -2 Query: 420 SAYVGNLSWNISEKDLRDFFKSSRIAS-IRFAIDKRTGDSRGFCHVDFEDDESLEKAV 250 S +VGNL+++ + +DL +FF S+I +R I G RG V+F + + +++A+ Sbjct: 137 SIFVGNLTYDSTPEDLTEFF--SQIGKVVRADIITSRGHHRGMGTVEFTNSDDVDRAI 192 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,374,489 Number of Sequences: 219361 Number of extensions: 1579659 Number of successful extensions: 4601 Number of sequences better than 10.0: 311 Number of HSP's better than 10.0 without gapping: 4336 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4536 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
