>VMSA_HBVW9 (P17101) Major surface antigen precursor|
          Length = 399

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
 Frame = -3

Query: 689 PATARKQEGLNTSASSPP--DSDNEVHSSNSEGFHGFLQD--------LAGGDTPG--NP 546
           PA+A +Q G   +  SPP  DS  +    NS  FH  LQD         AGG + G  NP
Sbjct: 93  PASANRQSGRQPTPISPPLRDSHPQAMQWNSTAFHQALQDPRVRGLYFPAGGSSSGTVNP 152

Query: 545 CADDAKAMEELCARS 501
             + A  +  + AR+
Sbjct: 153 APNIASHISSISART 167

>REM1_SCHPO (O14332) Meiosis-specific cyclin rem1|
          Length = 402

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = +2

Query: 464 DLSIQNRC-----HFEAAIWHKVLP*PSHHQHKDYQEYLLQPSPEE 586
           ++S+QN C     HF +  WH +         KDY  +L  P  EE
Sbjct: 33  EISLQNGCSPSDKHFPSQSWHGISSIEESQIQKDYDSFLASPLEEE 78

>PAX8_RAT (P51974) Paired box protein Pax-8|
          Length = 458

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = -3

Query: 656 TSASSPPDSDNEVHSSNSEGFHGFLQ-DLAGGDTPGNPCADDAKAMEELCARSLPQSDND 480
           +SA +PP+S       ++   HG L    AG DT    C D  +     C  S+    + 
Sbjct: 162 SSAVTPPESPQSDSLGSTYSIHGLLGIAQAGSDTHRGRCDDSDQGQ---CRLSIDSQSSS 218

Query: 479 FGLRDQPLDDIFWHDSLGPLD 417
            G R     D F    L PL+
Sbjct: 219 SGPRKHLRTDTFGQHHLEPLE 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,830,352
Number of Sequences: 219361
Number of extensions: 2328244
Number of successful extensions: 5880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5877
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 8127969984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)