ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38l09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OS9_CANAL (Q5ACR4) Protein OS-9 homolog precursor 31 2.6
2LY6E_CHICK (Q90986) Lymphocyte antigen Ly-6E precursor (Stem cel... 31 2.6
3DYR_MYCGE (P47470) Dihydrofolate reductase (EC 1.5.1.3) 30 7.7

>OS9_CANAL (Q5ACR4) Protein OS-9 homolog precursor|
          Length = 258

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 377 FSFNIHGRYFLAWYL--IDCISFHSNIPDCVS 466
           FSFN+H  Y+   Y   I+ I FH N+ D +S
Sbjct: 118 FSFNLHANYWTIGYCHGINVIQFHENLDDFIS 149



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>LY6E_CHICK (Q90986) Lymphocyte antigen Ly-6E precursor (Stem cell antigen 2)|
           (SCA-2)
          Length = 126

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 286 EKTGNHLCFKCSSATSNFGANCCTISKCTILPSIVANHCTNEHHCLT 146
           E+    +CF CS A+SN+   C T  KC            NE HC+T
Sbjct: 16  ERAHTLICFSCSDASSNWA--CLTPVKC----------AENEEHCVT 50



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>DYR_MYCGE (P47470) Dihydrofolate reductase (EC 1.5.1.3)|
          Length = 160

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 483 LIQLWKLTQSGMLE*KLMQSMRYQARKYLPWMLKLKLAQQKQMSEVAAYLM 331
           LI +W +TQ G++               LPWM+K +LA  K+ +   A LM
Sbjct: 2   LIAIWAMTQEGLIG----------NNNTLPWMIKQELAHFKKTTLFQALLM 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,430,569
Number of Sequences: 219361
Number of extensions: 1641826
Number of successful extensions: 3542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3536
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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