ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GUC2E_MOUSE (P52785) Guanylyl cyclase GC-E precursor (EC 4.6.1.2... 31 2.2
2TRPV1_HUMAN (Q8NER1) Transient receptor potential cation channel... 30 2.9
3GUC2D_CANFA (O19179) Retinal guanylyl cyclase 1 precursor (EC 4.... 30 2.9
4CO4_RAT (P08649) Complement C4 precursor [Contains: Complement C... 30 2.9
5GUC2E_RAT (P51840) Guanylyl cyclase GC-E precursor (EC 4.6.1.2) ... 30 2.9
6GUC2C_CAVPO (P70106) Heat-stable enterotoxin receptor precursor ... 30 3.8
7VL2_BPV2 (P06457) Minor capsid protein L2 30 3.8
8GUC2D_HUMAN (Q02846) Retinal guanylyl cyclase 1 precursor (EC 4.... 29 8.5
9CAC1S_RABIT (P07293) Voltage-dependent L-type calcium channel al... 29 8.5
10TLE1_XENLA (O42469) Enhancer of split groucho-like protein 1 29 8.5

>GUC2E_MOUSE (P52785) Guanylyl cyclase GC-E precursor (EC 4.6.1.2) (Guanylate|
            cyclase 2E)
          Length = 1108

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +1

Query: 343  CPLTTTGLQIPFDCLIVSRAYQAPPHLSRGLPVRIHLDLRDIRFLEQGHNG 495
            C     GL +P  CL       A    S GLP RIH+++  +R L     G
Sbjct: 987  CVAGVVGLTMPRYCLFGDTVNTASRMESTGLPYRIHVNMSTVRILRSLDQG 1037



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>TRPV1_HUMAN (Q8NER1) Transient receptor potential cation channel subfamily V|
           member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1)
           (Vanilloid receptor 1) (Capsaicin receptor)
          Length = 839

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 9   SNCYVKNATCMHIPAEKR-ADIIILLHYTTTDVR*AAHELLHEKMPAGQPAEHFTRLPV 182
           ++ Y K  T +HI  E+R   ++ LL     DV+ AAH    +K   G+P  +F  LP+
Sbjct: 196 TDSYYKGQTALHIAIERRNMALVTLLVENGADVQAAAHGDFFKK-TKGRPGFYFGELPL 253



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>GUC2D_CANFA (O19179) Retinal guanylyl cyclase 1 precursor (EC 4.6.1.2) (Guanylate|
            cyclase 2D, retinal) (RETGC-1) (Rod outer segment
            membrane guanylate cyclase) (ROS-GC) (Guanylate cyclase
            E) (GC-E)
          Length = 1109

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 343  CPLTTTGLQIPFDCLIVSRAYQAPPHLSRGLPVRIHLDLRDIRFL 477
            C     GL +P  CL       A    S GLP RIH+++  +R L
Sbjct: 988  CVAGVVGLTMPRYCLFGDTVNTASRMESTGLPYRIHVNMSTVRIL 1032



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>CO4_RAT (P08649) Complement C4 precursor [Contains: Complement C4 beta|
           chain; Complement C4 alpha chain; C4a anaphylatoxin;
           Complement C4 gamma chain]
          Length = 1737

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 10/40 (25%)
 Frame = +1

Query: 142 LLVSQQSTLLDFQ----------YSLHLKPNITELRTLIS 231
           LL    S +LDFQ          +S+H+ P ITELR L+S
Sbjct: 407 LLSGSDSKVLDFQQNTNGIGQVSFSIHVPPTITELRLLVS 446



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>GUC2E_RAT (P51840) Guanylyl cyclase GC-E precursor (EC 4.6.1.2) (Guanylate|
            cyclase 2E)
          Length = 1108

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 343  CPLTTTGLQIPFDCLIVSRAYQAPPHLSRGLPVRIHLDLRDIRFL 477
            C     GL +P  CL       A    S GLP RIH+++  +R L
Sbjct: 987  CVAGVVGLTMPRYCLFGDTVNTASRMESTGLPYRIHVNMSTVRIL 1031



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>GUC2C_CAVPO (P70106) Heat-stable enterotoxin receptor precursor (GC-C)|
            (Intestinal guanylate cyclase) (EC 4.6.1.2) (STA
            receptor) (Guanylyl cyclase C)
          Length = 1076

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 343  CPLTTTGLQIPFDCLIVSRAYQAPPHLSRGLPVRIHLDLRDIRFLEQ 483
            C     G++IP  CL       A    S GLP+RIH+    I  L++
Sbjct: 931  CAAGVVGIKIPRYCLFGDTVNTASRMESTGLPLRIHMSSSTIAILKR 977



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>VL2_BPV2 (P06457) Minor capsid protein L2|
          Length = 467

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 489 MPLFEEP-DVPEIEMDPNWQPTGQMRGSLVGSAYDQAIERYLQPGGGQRTNQTRPPGR*T 313
           +PL EEP D  EIE+D   +    +  S   +     + R L PG G   + TRP G  T
Sbjct: 349 IPLHEEPGDFEEIELDDLGEEHALLPKSYT-APIGSGVRRALIPGQG--FSATRPTGVVT 405

Query: 312 YGS 304
           YGS
Sbjct: 406 YGS 408



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>GUC2D_HUMAN (Q02846) Retinal guanylyl cyclase 1 precursor (EC 4.6.1.2) (Guanylate|
            cyclase 2D, retinal) (RETGC-1) (Rod outer segment
            membrane guanylate cyclase) (ROS-GC)
          Length = 1103

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +1

Query: 343  CPLTTTGLQIPFDCLIVSRAYQAPPHLSRGLPVRIHLDLRDI---RFLEQGH 489
            C     GL +P  CL       A    S GLP RIH++L  +   R L+ G+
Sbjct: 984  CVAGVVGLTMPRYCLFGDTVNTASRMESTGLPYRIHVNLSTVGILRALDSGY 1035



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>CAC1S_RABIT (P07293) Voltage-dependent L-type calcium channel alpha-1S subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 3,
            skeletal muscle)
          Length = 1873

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 495  PVMPLFEEPDVPEIEMDPNWQPTGQMRGSLVGSAYDQAIERYLQPGGGQR 346
            P MP+ + P  P  +   +    GQ R SL GS  D+A +R    G   R
Sbjct: 1729 PGMPINQAPPAPCQQPSTDPPERGQRRTSLTGSLQDEAPQRRSSEGSTPR 1778



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>TLE1_XENLA (O42469) Enhancer of split groucho-like protein 1|
          Length = 767

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +3

Query: 384 LDRKQSLPGSPSSVPWAASSDPSRS---PGHQVPRTG 485
           L RK   P SP+S+  ++S  PSRS   P  QV + G
Sbjct: 284 LQRKDPPPASPNSMTSSSSVSPSRSKDIPSQQVEKAG 320


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,756,623
Number of Sequences: 219361
Number of extensions: 1573375
Number of successful extensions: 4390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4387
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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