ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38l06 |
|---|---|
| Clone Library Name | barley_pub |
>RBP1C_ARATH (P92985) Ran-binding protein 1 homolog c| Length = 219 Score = 150 bits (379), Expect = 4e-36 Identities = 73/111 (65%), Positives = 88/111 (79%) Frame = -3 Query: 699 TVKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELK 520 TVKLLKHKE GKVRLVMRQ+KTLKICANHL+ S +QEH+G++KSC+WHA DF+DGELK Sbjct: 72 TVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATDFSDGELK 131 Query: 519 DEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEKLSV 367 DE+F IRF ++ENCK F + EIAES + ES +G AAGL+E LSV Sbjct: 132 DELFCIRFASIENCKTFMEKFTEIAES--QQVGKESTQGDEAAGLIENLSV 180
>RBP1B_ARATH (Q8RWG8) Ran-binding protein 1 homolog b| Length = 217 Score = 149 bits (376), Expect = 8e-36 Identities = 74/111 (66%), Positives = 88/111 (79%) Frame = -3 Query: 699 TVKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELK 520 TVK LKH+ +GK+RLVMRQ+KTLKICANHLV S +QEHAG+DKSCVWHA DF+DGELK Sbjct: 75 TVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELK 134 Query: 519 DEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEKLSV 367 DE+F IRF +VENCK F E+AES ++E ES + S AGLLEKL+V Sbjct: 135 DELFCIRFASVENCKAFMQKFKEVAES--EEEKEESKDASDTAGLLEKLTV 183
>RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-binding protein| siRanBP) Length = 228 Score = 146 bits (368), Expect = 7e-35 Identities = 71/111 (63%), Positives = 85/111 (76%) Frame = -3 Query: 699 TVKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELK 520 TVK LKHK GK+RLVMRQ+KTLKICANH V S +QEH G++KSCVWHA DFADGELK Sbjct: 73 TVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELK 132 Query: 519 DEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEKLSV 367 DE+F IRF ++ENCK F E+AES ++E ES + + AGLLEKL+V Sbjct: 133 DELFCIRFASIENCKTFMQKFKEVAES--EEEKEESKDAADTAGLLEKLTV 181
>RANG_HUMAN (P43487) Ran-specific GTPase-activating protein (Ran-binding| protein 1) (RanBP1) Length = 201 Score = 94.0 bits (232), Expect = 4e-19 Identities = 55/115 (47%), Positives = 71/115 (61%), Gaps = 5/115 (4%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHA-ADFADGELK 520 VKLLKHKE G +RL+MR+ KTLKICANH + +++ +AGSD++ VW+ ADFAD K Sbjct: 75 VKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPK 134 Query: 519 DEMFAIRFGTVENCKKFKDLVD----EIAESLAKDEDGESVEGSSAAGLLEKLSV 367 E+ AIRF EN +KFK + EI E K G++ A LE LSV Sbjct: 135 PELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSV 189
>RANG_MOUSE (P34022) Ran-specific GTPase-activating protein (Ran-binding| protein 1) (RANBP1) (HpaII tiny fragments locus 9a protein) Length = 203 Score = 94.0 bits (232), Expect = 4e-19 Identities = 53/114 (46%), Positives = 72/114 (63%), Gaps = 4/114 (3%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHA-ADFADGELK 520 VKLLKHKE G +RL+MR+ KTLKICANH + +++ +AGSD++ VW+ ADFAD K Sbjct: 75 VKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPK 134 Query: 519 DEMFAIRFGTVENCKKFKDLVDEIAESLAKDE---DGESVEGSSAAGLLEKLSV 367 E+ AIRF EN +KFK +E + + + E G++ A LE LSV Sbjct: 135 PELLAIRFLNAENAQKFKTKFEECRKEIEEREKKGPGKNDNAEKVAEKLEALSV 188
>RANG_SCHPO (Q09717) Ran-specific GTPase-activating protein 1 (Ran-binding| protein 1) (RANBP1) (Spi1-binding protein) Length = 215 Score = 90.5 bits (223), Expect = 4e-18 Identities = 47/89 (52%), Positives = 60/89 (67%), Gaps = 1/89 (1%) Frame = -3 Query: 693 KLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWH-AADFADGELKD 517 +LLKHKE GK RLVMR+ KTLK+CANHL++ K+ + GSD+S VW AAD ++GE Sbjct: 122 RLLKHKETGKTRLVMRRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADVSEGEPTA 181 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAK 430 E FAIRF EN FK+ ++ E AK Sbjct: 182 ETFAIRFANSENANLFKENFEKYQEENAK 210
>RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein| Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270) Length = 3224 Score = 87.8 bits (216), Expect = 3e-17 Identities = 45/89 (50%), Positives = 60/89 (67%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 VK+L+HK +GK+RL+MR+ + LKICANH + K+ +AGSD+S VWHA D+AD K Sbjct: 1219 VKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKP 1278 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAK 430 E AIRF T E FK +E A+S+ K Sbjct: 1279 EQLAIRFKTPEEAALFKCKFEE-AQSILK 1306 Score = 78.6 bits (192), Expect = 2e-14 Identities = 34/82 (41%), Positives = 59/82 (71%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+LK++ NGK+R++MR+ + LK+CANH + +T ++ +GSD++ +W A+DF+DG+ K Sbjct: 2060 LKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKL 2119 Query: 516 EMFAIRFGTVENCKKFKDLVDE 451 E A +F T E ++FK +E Sbjct: 2120 EQLAAKFKTPELAEEFKQKFEE 2141 Score = 73.9 bits (180), Expect = 4e-13 Identities = 35/90 (38%), Positives = 55/90 (61%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+L++ +N +VR+VMR+ + LK+CANH + +Q G+++ +W A DFADGE K Sbjct: 2357 IKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLWTACDFADGERKV 2416 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAKD 427 E A+RF + FK + DE + KD Sbjct: 2417 EHLAVRFKLQDVADSFKKIFDEAKTAQEKD 2446 Score = 70.5 bits (171), Expect = 5e-12 Identities = 34/93 (36%), Positives = 55/93 (59%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+L H R++MR+ + K+CANH++ T +++ S+ + VW A+D+ADGE K Sbjct: 2958 IKILWHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKV 3017 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAKDEDG 418 E A+RF T E FK +E ++L K + G Sbjct: 3018 EQLAVRFKTKEVADCFKKTFEECQQNLMKLQKG 3050
>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)| Length = 3053 Score = 86.7 bits (213), Expect = 6e-17 Identities = 44/89 (49%), Positives = 60/89 (67%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 VK+L+HK +GK+RL+MR+ + LKICANH + K+ +AGSD+S VWHA D+AD K Sbjct: 1213 VKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKP 1272 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAK 430 E AIRF T E FK +E A+++ K Sbjct: 1273 EQLAIRFKTPEEAALFKCKFEE-AQNILK 1300 Score = 78.6 bits (192), Expect = 2e-14 Identities = 34/82 (41%), Positives = 59/82 (71%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+LK++ NGK+R++MR+ + LK+CANH + +T ++ +GSD++ +W A+DF+DG+ K Sbjct: 1897 LKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKL 1956 Query: 516 EMFAIRFGTVENCKKFKDLVDE 451 E A +F T E ++FK +E Sbjct: 1957 EQLAAKFKTPELAEEFKQKFEE 1978 Score = 74.7 bits (182), Expect = 3e-13 Identities = 36/90 (40%), Positives = 55/90 (61%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+L++ +N +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K Sbjct: 2194 IKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQTMKGTERVWVWTACDFADGERKI 2253 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAKD 427 E A+RF + FK + DE + KD Sbjct: 2254 EHLAVRFKLQDVADSFKKIFDEAKTAQEKD 2283 Score = 68.2 bits (165), Expect = 2e-11 Identities = 31/95 (32%), Positives = 57/95 (60%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+L H R++MR+ + K+CANH++ +++ S+ + VW A+D+ADGE K Sbjct: 2787 IKILWHTMKKYYRILMRRDQVFKVCANHVITKAMELKPLNVSNNALVWTASDYADGEAKV 2846 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGES 412 E A+RF T E + FK ++ +++ K ++G + Sbjct: 2847 EQLAVRFKTKEMTESFKKKFEDSQQNIIKLQNGHT 2881
>RBP22_HUMAN (Q53T03) Ran-binding protein 2-like 2 (RanBP2L2)| Length = 1765 Score = 79.0 bits (193), Expect = 1e-14 Identities = 34/82 (41%), Positives = 59/82 (71%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+LK++ NGK+R++MR+ + LK+CANH + +T ++ +GSD++ +W A+DF+DG+ K Sbjct: 1084 LKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSASDFSDGDAKL 1143 Query: 516 EMFAIRFGTVENCKKFKDLVDE 451 E A +F T E ++FK +E Sbjct: 1144 ERLAAKFKTPELAEEFKQKFEE 1165 Score = 75.5 bits (184), Expect = 1e-13 Identities = 36/90 (40%), Positives = 55/90 (61%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+L++ +N +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K Sbjct: 1381 IKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKV 1440 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAKD 427 E A+RF + FK + DE + KD Sbjct: 1441 EHLAVRFKLQDVADSFKKIFDEAKTAQEKD 1470
>RBP23_HUMAN (O14715) Ran-binding protein 2-like 3 (RanBP2L3) (Fragment)| Length = 755 Score = 79.0 bits (193), Expect = 1e-14 Identities = 34/82 (41%), Positives = 59/82 (71%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+LK++ NGK+R++MR+ + LK+CANH + +T ++ +GSD++ +W A+DF+DG+ K Sbjct: 74 LKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSASDFSDGDAKL 133 Query: 516 EMFAIRFGTVENCKKFKDLVDE 451 E A +F T E ++FK +E Sbjct: 134 ERLAAKFKTPELAEEFKQKFEE 155 Score = 75.5 bits (184), Expect = 1e-13 Identities = 36/90 (40%), Positives = 55/90 (61%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+L++ +N +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K Sbjct: 371 IKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKV 430 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAKD 427 E A+RF + FK + DE + KD Sbjct: 431 EHLAVRFKLQDVADSFKKIFDEAKTAQEKD 460
>YRB1_YEAST (P41920) Ran-specific GTPase-activating protein 1 (Ran-binding| protein 1) (RANBP1) (Perinuclear array-localized protein) Length = 201 Score = 78.6 bits (192), Expect = 2e-14 Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 1/85 (1%) Frame = -3 Query: 693 KLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWH-AADFADGELKD 517 K LK+K+ KVR++MR+ KTLKICANH++ ++ + GSD+S V+ AD A+GE + Sbjct: 112 KFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEA 171 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAE 442 FAIRFG+ EN KFK+ ++ E Sbjct: 172 FTFAIRFGSKENADKFKEEFEKAQE 196
>RGPD8_HUMAN (Q99666) RANBP2-like and GRIP domain-containing protein 8| (Ran-binding protein 2-like 1) (RanBP2L1) (Sperm membrane protein BS-63) Length = 1765 Score = 76.3 bits (186), Expect = 9e-14 Identities = 33/82 (40%), Positives = 58/82 (70%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+LK++ NGK+R++MR+ + LK+CANH + +T ++ +GSD++ +W A+ F+DG+ K Sbjct: 1084 LKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSASHFSDGDAKL 1143 Query: 516 EMFAIRFGTVENCKKFKDLVDE 451 E A +F T E ++FK +E Sbjct: 1144 ERLAAKFKTPELAEEFKQKFEE 1165 Score = 75.5 bits (184), Expect = 1e-13 Identities = 36/90 (40%), Positives = 55/90 (61%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+L++ +N +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K Sbjct: 1381 IKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKV 1440 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAKD 427 E A+RF + FK + DE + KD Sbjct: 1441 EHLAVRFKLQDVADSFKKIFDEAKTAQEKD 1470
>RBP26_HUMAN (Q68DN6) Ran-binding protein 2-like 6 (RanBP2L6)| Length = 1748 Score = 76.3 bits (186), Expect = 9e-14 Identities = 34/82 (41%), Positives = 58/82 (70%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+LK++ NGK R++MR+ + LK+CANH + +T ++ +GSD++ +W A+DF+DG+ K Sbjct: 1069 LKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKL 1128 Query: 516 EMFAIRFGTVENCKKFKDLVDE 451 E A +F T E ++FK +E Sbjct: 1129 ERLAAQFKTPELAEEFKQKFEE 1150 Score = 75.5 bits (184), Expect = 1e-13 Identities = 36/90 (40%), Positives = 55/90 (61%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+L++ +N +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K Sbjct: 1366 IKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKV 1425 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAKD 427 E A+RF + FK + DE + KD Sbjct: 1426 EHLAVRFKLQDVADSFKKIFDEAKTAQEKD 1455
>RBP2_BOVIN (P48820) Ran-binding protein 2 (RanBP2) (Nuclear pore complex| protein Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270) (Fragment) Length = 1085 Score = 75.9 bits (185), Expect = 1e-13 Identities = 37/90 (41%), Positives = 55/90 (61%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+L++ EN +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K Sbjct: 222 IKILQNYENKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWVWTACDFADGERKI 281 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAKD 427 E A+RF + FK + DE + KD Sbjct: 282 EHLAVRFKLQDVADSFKKIFDEAKVAQEKD 311 Score = 72.4 bits (176), Expect = 1e-12 Identities = 34/94 (36%), Positives = 56/94 (59%) Frame = -3 Query: 696 VKLLKHKENGKVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKD 517 +K+L H R++MR+ + K+CANH++ T +++ S+ + VW A+D+ADGE K Sbjct: 819 IKILWHTVKNYFRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKV 878 Query: 516 EMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGE 415 E A+RF T E FK +E ++L K + G+ Sbjct: 879 EQLAVRFKTKEMADCFKKKFEECQQNLLKPQKGQ 912 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,074,702 Number of Sequences: 219361 Number of extensions: 1626970 Number of successful extensions: 4659 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4532 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4651 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7026286028 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
