ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38l04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXTN_DAUCA (P06599) Extensin precursor 32 2.1
2PLS1_MOUSE (Q9JJ00) Phospholipid scramblase 1 (PL scramblase 1) ... 30 7.9

>EXTN_DAUCA (P06599) Extensin precursor|
          Length = 306

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 451 YRSPPYPHHSL--LYRLHFLNLIHPRPLHRSPPCPNHA 558
           Y+SPP P HS   ++   + +   P P+++SPP P H+
Sbjct: 205 YKSPPPPKHSPAPVHHYKYKSPPPPTPVYKSPPPPEHS 242



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>PLS1_MOUSE (Q9JJ00) Phospholipid scramblase 1 (PL scramblase 1)|
           (Ca(2+)-dependent phospholipid scramblase 1)
           (Transplantability-associated protein 1) (TRA1) (NOR1)
          Length = 328

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 460 PPYPHHSLLYRLHFLNLIHPRPLHRSPPCPNHASSASY*FPIGLYAG*GPHGVALQ 627
           PPYP  +            P+  ++ PP P       Y  P G YAG GP G  +Q
Sbjct: 23  PPYPPAAFQGPSDHAAYPIPQAGYQGPPGPYPGPQPGYPVPPGGYAGGGPSGFPVQ 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,494,966
Number of Sequences: 219361
Number of extensions: 1470094
Number of successful extensions: 3809
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3805
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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