ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39a03 |
|---|---|
| Clone Library Name | barley_pub |
>PFPB_RICCO (Q41141) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 214 bits (545), Expect = 1e-55 Identities = 100/120 (83%), Positives = 112/120 (93%) Frame = -3 Query: 586 LPTNFDSSYCYALGYGAGALLQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVEXRHG 407 LPTNFDS+YCYALGY AGALL GKTGLISSVGNL APV +WTVGGTALT+LMDVE RHG Sbjct: 431 LPTNFDSTYCYALGYAAGALLHSGKTGLISSVGNLGAPVAEWTVGGTALTSLMDVERRHG 490 Query: 406 KFKPVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLELGA 227 KFKPVIKKAMVEL+ APFKKFAS+R+EWA+KNRY+SPGPIQF GPGSDA++HTL+LELG+ Sbjct: 491 KFKPVIKKAMVELEGAPFKKFASLREEWALKNRYVSPGPIQFMGPGSDAASHTLLLELGS 550
>PFPB_SOLTU (P21343) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 204 bits (519), Expect = 2e-52 Identities = 98/121 (80%), Positives = 110/121 (90%) Frame = -3 Query: 586 LPTNFDSSYCYALGYGAGALLQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVEXRHG 407 LP+NFDS+YCYALGYGAG+LLQ GKTGLISSVGNLAAPVE+ TVGGTALTALMDVE RHG Sbjct: 431 LPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEELTVGGTALTALMDVERRHG 490 Query: 406 KFKPVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLELGA 227 KFKPVIKKAMVEL+ APFKKFAS R+EWA+ NRYI+PGPIQF GP ++ NHTL+LELG Sbjct: 491 KFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGV 550 Query: 226 E 224 + Sbjct: 551 D 551
>PFPA_SOLTU (P21342) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 616 Score = 72.4 bits (176), Expect = 9e-13 Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 7/124 (5%) Frame = -3 Query: 586 LPTNFDSSYCYALGYGAGALLQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVEXRHG 407 LP+ FD Y Y LG+ +L G G ++++ NL P +W G + ++A+M V+ R+G Sbjct: 436 LPSKFDCDYAYVLGHVCYHILAAGLNGYMATITNLKNPANKWHCGASPISAMMTVK-RYG 494 Query: 406 KFK-------PVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHT 248 + P + A V+L ++ + ++ + + Y +PGP+QF GPG+DA + Sbjct: 495 RGPGKASIGVPALHPATVDLRGKSYELLSQNATKFLLDDVYRNPGPLQFDGPGADAKAGS 554 Query: 247 LMLE 236 L++E Sbjct: 555 LVVE 558
>PFPA_RICCO (Q41140) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 617 Score = 69.7 bits (169), Expect = 6e-12 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Frame = -3 Query: 586 LPTNFDSSYCYALGYGAGALLQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVE---- 419 LP+ FD Y Y LG+ +L G G +++ NL PV +W G + A+M V+ Sbjct: 436 LPSKFDCDYAYVLGHICYHVLAAGLNGYMATATNLKNPVNKWRCGAAPIAAMMTVKRWAQ 495 Query: 418 --XRHGKFKPVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTL 245 KP I A V+L ++ ++ + + Y +PGP+QF GPG+DA TL Sbjct: 496 NPGATSIGKPAIHPAAVDLKGKAYELLRLNAVKFLMDDLYRNPGPLQFEGPGADAKPITL 555 Query: 244 MLE 236 +E Sbjct: 556 CVE 558
>Y2348_MYCLE (Q49929) Hypothetical glycosyl transferase ML2348 (EC 2.-.-.-)| Length = 421 Score = 36.2 bits (82), Expect = 0.072 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 8/100 (8%) Frame = +2 Query: 140 WEVCSPLSKLQGTRRKFQRDALYIRSLYLGAELQHQGVV-RGVASRAAELDGTGADVSVL 316 W++ P+ LQ R+ + A ++SL GA+L GVV +GV + AE G V Sbjct: 73 WKILPPIKALQQLRQAWADMATDLKSLADGADLVMTGVVYQGVVANVAEYYGIPFGVL-- 130 Query: 317 DGPFIPHR--GKLLKWRSIKLNHSLL-----DHWLELAMP 415 F+P R GK++ LN ++L HWL P Sbjct: 131 --HFVPARVNGKIIPSLPSPLNRAILATVWRAHWLLAKKP 168
>NU1M_HYLLA (Q96126) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 33.1 bits (74), Expect = 0.61 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +3 Query: 180 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 347 +E K ST+ALYI AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTTALYIIAPTLALTIALLLWTPLPMPNPLINLNLGLL--FILATSSLTVYS 115 Query: 348 FL-NGAASSSTIAFL 389 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>HYAL_STRPU (O76536) Hyalin (Fragment)| Length = 1200 Score = 32.3 bits (72), Expect = 1.0 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = +3 Query: 315 LMAHSSRIEANFLNGAASSSTIAFLITGLNL-PCLLSTSINAVSAVPPTVHCSTGAAR 485 L+ +S +F G S + I +G N PC + INAV PPTV+C+ A+ Sbjct: 756 LVTRTSAPGDSFPVGTTSVTYIFTDASGNNAQPCTFNVVINAVDTTPPTVNCANNIAQ 813 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 408 PCLLSTSINAVSAVPPTVHCSTGAAR 485 PC + +I+AV PPTV+C A+ Sbjct: 704 PCTFTVTISAVDTTPPTVNCINNVAQ 729
>NU1M_PANTR (Q9T9W3) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.8 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +3 Query: 180 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 347 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 348 FL-NGAASSSTIAFL 389 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_HUMAN (P03886) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.8 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +3 Query: 180 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 347 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 348 FL-NGAASSSTIAFL 389 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_GORGO (Q9T9Z0) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.8 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +3 Query: 180 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 347 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 348 FL-NGAASSSTIAFL 389 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_LEMCA (O78696) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 2.3 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +3 Query: 180 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 347 +E + + S+S+LY AP+ + + W LP PL M GL+ F++A SS + Sbjct: 58 KEPLRPLTSSSSLYTIAPTLALTIALVTWIPLPLPYPLINMNMGLL--FILATSSLAVYS 115 Query: 348 FL-NGAASSSTIAFL 389 L +G AS+S A + Sbjct: 116 ILWSGWASNSKYALI 130
>LASP1_DROME (Q8I7C3) LIM and SH3 domain protein Lasp| Length = 657 Score = 30.8 bits (68), Expect = 3.0 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +1 Query: 418 SQHPSTQSVQFLQQSIVPQEQPGYQPTR*VLSCQTGEEHQHHXLMHSNSWN 570 S HPS SV Q Q QP Q T L ++ HH L+++N+ N Sbjct: 333 SHHPSGNSVDQYDQPQQQQHQPQQQSTNPTL-VAAQQQQSHHSLLNNNASN 382
>HYAL_LYTVA (O96530) Hyalin (Fragment)| Length = 530 Score = 30.8 bits (68), Expect = 3.0 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +3 Query: 408 PCLLSTSINAVSAVPPTVHCSTGAARL 488 PC+ + ++N V PPTV+C + R+ Sbjct: 477 PCVFTITVNTVDTTPPTVNCVSDVVRV 503
>YWCA_BACSU (P39599) Putative symporter ywcA| Length = 516 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 550 LGYGAGALLQFGKTGLISSVGNLAAPVEQWTVGGTALTALM 428 LG+GA A + F GN+AAP+ +GG L A + Sbjct: 288 LGFGAAAFVGFDAITAADQAGNMAAPLLAKALGGDFLFAFV 328
>POLG_TBEVH (Q01299) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3414 Score = 29.3 bits (64), Expect = 8.8 Identities = 9/21 (42%), Positives = 17/21 (80%) Frame = +2 Query: 305 VSVLDGPFIPHRGKLLKWRSI 367 V +LD PF+ ++GK+++WR + Sbjct: 3328 VWILDNPFMQNKGKVMEWRDV 3348 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,002,336 Number of Sequences: 219361 Number of extensions: 1795111 Number of successful extensions: 6004 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5736 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5998 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
