ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474682.1| Oryza sativa (japonica cultivar-group), predic... 105 2e-19
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
3dbj|AK067970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 2e-19
4emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4,... 105 2e-19
5emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4,... 105 2e-19
6gb|AY110514.1| Zea mays CL948_1 mRNA sequence 54 5e-04
7dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 48 0.032
8emb|BX936429.8| Zebrafish DNA sequence from clone DKEY-224E22 in... 44 0.50
9gb|AC005711.2| Drosophila melanogaster clone BACR48M09, complete... 42 2.0
10gb|AC009214.8| Drosophila melanogaster clone BACR05E09, complete... 42 2.0
11gb|AC114817.3| Mus musculus BAC clone RP23-28O15 from 14, comple... 42 2.0
12gb|AC121978.2| Mus musculus BAC clone RP24-289K21 from 14, compl... 42 2.0
13gb|AC164425.3| Mus musculus BAC clone RP24-497H13 from chromosom... 42 2.0
14gb|AC008740.7| Homo sapiens chromosome 16 clone CTD-2547E10, com... 42 2.0
15gb|AC096741.3| Homo sapiens BAC clone RP11-327O17 from 4, comple... 42 2.0
16gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 42 2.0
17gb|AF001550.1|HSAF001550 Homo sapiens chromosome 16 BAC clone CI... 42 2.0
18gb|AE003636.4| Drosophila melanogaster chromosome 2L, section 45... 42 2.0
19gb|AC166776.6| Mus musculus chromosome 5, clone RP23-24K16, comp... 40 7.8
20gb|AC118138.2| Homo sapiens BAC clone RP11-451K15 from 7, comple... 40 7.8
21gb|AC122930.4| Mus musculus BAC clone RP23-13L19 from chromosome... 40 7.8
22gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosom... 40 7.8
23gb|AC004878.3| Homo sapiens PAC clone RP4-754G14 from 7, complet... 40 7.8
24emb|CR533578.7| Zebrafish DNA sequence from clone CH211-216F21 i... 40 7.8
25emb|Z97054.1|HS339A18 Human DNA sequence from clone RP3-339A18 o... 40 7.8
26emb|BX284668.4| Human DNA sequence from clone RP11-108M9 on chro... 40 7.8
27emb|AL691442.32| Human DNA sequence from clone RP11-540D14 on ch... 40 7.8
28emb|AL603966.9| Human DNA sequence from clone RP11-164N7 on chro... 40 7.8
29emb|AL591684.7| Human DNA sequence from clone RP11-301J7 on chro... 40 7.8
30emb|AL391137.11| Human DNA sequence from clone RP11-144G6 on chr... 40 7.8
31emb|AL137802.7| Human DNA sequence from clone RP4-798A10 on chro... 40 7.8
32emb|AL049537.48|HS1164I10 Human DNA sequence from clone RP5-1164... 40 7.8
33gb|AC160997.5| Mus musculus BAC clone RP23-68E4 from chromosome ... 40 7.8
34emb|CR380956.1| Candida glabrata strain CBS138 chromosome J comp... 40 7.8
35gb|AC134866.3| Homo sapiens BAC clone RP11-1398B17 from 7, compl... 40 7.8
36gb|AC138783.10| Homo sapiens PAC clone RP5-962D3 from 7, complet... 40 7.8
37gb|AC103559.2| Homo sapiens chromosome 3 clone RP11-286L5, compl... 40 7.8
38gb|AE014174.1| Mus musculus piebald deletion region section 2 of... 40 7.8
39gb|AC021915.11| Homo sapiens chromosome 8, clone RP11-26M5, comp... 40 7.8
40gb|AC105418.5| Homo sapiens BAC clone RP11-450O3 from 7, complet... 40 7.8
41gb|AC006995.5| Homo sapiens BAC clone RP11-396K3 from 7, complet... 40 7.8
42gb|AC004166.12| Homo sapiens Chromosome 7 BAC Clone 239c10, comp... 40 7.8
43gb|AC021079.4|AC021079 Homo sapiens chromosome 5 clone CTC-202C8... 40 7.8
44gb|AC005080.2|AC005080 Homo sapiens BAC clone CTA-269P13 from 7q... 40 7.8
45gb|AC005098.2|AC005098 Homo sapiens BAC clone CTA-350L10 from 7q... 40 7.8
46gb|AC004867.5|AC004867 Homo sapiens PAC clone RP4-728P19 from 7,... 40 7.8
47gb|AC134616.4| Homo sapiens PAC clone RP4-630L23 from 7, complet... 40 7.8
48gb|AC107956.8| Homo sapiens chromosome 11, clone RP11-452G18, co... 40 7.8
49gb|AC068630.21| Homo sapiens 3 BAC RP11-289N10 (Roswell Park Can... 40 7.8
50gb|AC003692.1|AC003692 Human Chromosome 11 pac pDJ306b4, complet... 40 7.8
51gb|AC005071.2|AC005071 Homo sapiens clone RG161A02, complete seq... 40 7.8
52gb|AC102818.16| Mus musculus chromosome 14, clone RP23-78J13, co... 40 7.8
53dbj|AP002967.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.8
54gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complet... 40 7.8
55emb|AL606984.20| Mouse DNA sequence from clone RP23-81D5 on chro... 40 7.8 
>ref|XM_474682.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1128

 Score =  105 bits (53), Expect = 2e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                        
Query: 319  tgtaatctctgacgagggtctccctgtacaacggcgggttctcgtccgacagcagctcct 378
            |||||||||||||||| | |||||||||||| ||||||||||| || |||| ||||||||
Sbjct: 1060 tgtaatctctgacgagtgcctccctgtacaaaggcgggttctcatcagacaacagctcct 1001

                                                                        
Query: 379  tgatcagaccatacatcctcgtcgaggccggatggaaatgcgggctgaagaagcacgcga 438
            ||||| | |||||||||||||| ||   |||||| ||||| | ||||||||| || || |
Sbjct: 1000 tgatcgggccatacatcctcgtggaaatcggatgaaaatgggtgctgaagaaacaggcaa 941

                         
Query: 439  tggagaccctcgg 451
            | ||||| |||||
Sbjct: 940  tcgagactctcgg 928
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  105 bits (53), Expect = 2e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                           
Query: 319     tgtaatctctgacgagggtctccctgtacaacggcgggttctcgtccgacagcagctcct 378
               |||||||||||||||| | |||||||||||| ||||||||||| || |||| ||||||||
Sbjct: 5557203 tgtaatctctgacgagtgcctccctgtacaaaggcgggttctcatcagacaacagctcct 5557144

                                                                           
Query: 379     tgatcagaccatacatcctcgtcgaggccggatggaaatgcgggctgaagaagcacgcga 438
               ||||| | |||||||||||||| ||   |||||| ||||| | ||||||||| || || |
Sbjct: 5557143 tgatcgggccatacatcctcgtggaaatcggatgaaaatgggtgctgaagaaacaggcaa 5557084

                            
Query: 439     tggagaccctcgg 451
               | ||||| |||||
Sbjct: 5557083 tcgagactctcgg 5557071



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 292     ctaacccgatggagtagtaatgtt 315
               |||||||||| |||||||||||||
Sbjct: 5529558 ctaacccgatagagtagtaatgtt 5529535
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>dbj|AK067970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124E20, full
            insert sequence
          Length = 1387

 Score =  105 bits (53), Expect = 2e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                        
Query: 319  tgtaatctctgacgagggtctccctgtacaacggcgggttctcgtccgacagcagctcct 378
            |||||||||||||||| | |||||||||||| ||||||||||| || |||| ||||||||
Sbjct: 1070 tgtaatctctgacgagtgcctccctgtacaaaggcgggttctcatcagacaacagctcct 1011

                                                                        
Query: 379  tgatcagaccatacatcctcgtcgaggccggatggaaatgcgggctgaagaagcacgcga 438
            ||||| | |||||||||||||| ||   |||||| ||||| | ||||||||| || || |
Sbjct: 1010 tgatcgggccatacatcctcgtggaaatcggatgaaaatgggtgctgaagaaacaggcaa 951

                         
Query: 439  tggagaccctcgg 451
            | ||||| |||||
Sbjct: 950  tcgagactctcgg 938
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>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01,
             complete sequence
          Length = 162227

 Score =  105 bits (53), Expect = 2e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                         
Query: 319   tgtaatctctgacgagggtctccctgtacaacggcgggttctcgtccgacagcagctcct 378
             |||||||||||||||| | |||||||||||| ||||||||||| || |||| ||||||||
Sbjct: 14410 tgtaatctctgacgagtgcctccctgtacaaaggcgggttctcatcagacaacagctcct 14351

                                                                         
Query: 379   tgatcagaccatacatcctcgtcgaggccggatggaaatgcgggctgaagaagcacgcga 438
             ||||| | |||||||||||||| ||   |||||| ||||| | ||||||||| || || |
Sbjct: 14350 tgatcgggccatacatcctcgtggaaatcggatgaaaatgggtgctgaagaaacaggcaa 14291

                          
Query: 439   tggagaccctcgg 451
             | ||||| |||||
Sbjct: 14290 tcgagactctcgg 14278
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>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01,
              complete sequence
          Length = 150283

 Score =  105 bits (53), Expect = 2e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                          
Query: 319    tgtaatctctgacgagggtctccctgtacaacggcgggttctcgtccgacagcagctcct 378
              |||||||||||||||| | |||||||||||| ||||||||||| || |||| ||||||||
Sbjct: 111833 tgtaatctctgacgagtgcctccctgtacaaaggcgggttctcatcagacaacagctcct 111774

                                                                          
Query: 379    tgatcagaccatacatcctcgtcgaggccggatggaaatgcgggctgaagaagcacgcga 438
              ||||| | |||||||||||||| ||   |||||| ||||| | ||||||||| || || |
Sbjct: 111773 tgatcgggccatacatcctcgtggaaatcggatgaaaatgggtgctgaagaaacaggcaa 111714

                           
Query: 439    tggagaccctcgg 451
              | ||||| |||||
Sbjct: 111713 tcgagactctcgg 111701



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 292   ctaacccgatggagtagtaatgtt 315
             |||||||||| |||||||||||||
Sbjct: 84188 ctaacccgatagagtagtaatgtt 84165
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>gb|AY110514.1| Zea mays CL948_1 mRNA sequence
          Length = 1344

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 324  tctctgacgagggtctccctgtacaacggcgggttctcgtccgacagcagctccttgat 382
            ||||| ||||| || ||||| ||||| || |||||||| || |||||||||||||||||
Sbjct: 1042 tctctcacgagtgtttccctatacaaaggagggttctcctcggacagcagctccttgat 984
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 431     gcacgcgatggagaccctcggcgt 454
               ||||||||||||||||||||||||
Sbjct: 2704674 gcacgcgatggagaccctcggcgt 2704651
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>emb|BX936429.8| Zebrafish DNA sequence from clone DKEY-224E22 in linkage group 18,
            complete sequence
          Length = 158832

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 309  taatgtttgatgtaatctctga 330
            ||||||||||||||||||||||
Sbjct: 7240 taatgtttgatgtaatctctga 7219
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>gb|AC005711.2| Drosophila melanogaster clone BACR48M09, complete sequence
          Length = 165267

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 157    ttgtgctgccattttactgcc 177
              |||||||||||||||||||||
Sbjct: 136029 ttgtgctgccattttactgcc 136049
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>gb|AC009214.8| Drosophila melanogaster clone BACR05E09, complete sequence
          Length = 154772

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 157    ttgtgctgccattttactgcc 177
              |||||||||||||||||||||
Sbjct: 147492 ttgtgctgccattttactgcc 147472
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>gb|AC114817.3| Mus musculus BAC clone RP23-28O15 from 14, complete sequence
          Length = 211624

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   cagtggtggtgcactcctgta 122
             |||||||||||||||||||||
Sbjct: 17724 cagtggtggtgcactcctgta 17744
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>gb|AC121978.2| Mus musculus BAC clone RP24-289K21 from 14, complete sequence
          Length = 168968

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    cagtggtggtgcactcctgta 122
              |||||||||||||||||||||
Sbjct: 149177 cagtggtggtgcactcctgta 149197
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>gb|AC164425.3| Mus musculus BAC clone RP24-497H13 from chromosome 16, complete
            sequence
          Length = 162603

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 102  cagtggtggtgcactcctgta 122
            |||||||||||||||||||||
Sbjct: 5778 cagtggtggtgcactcctgta 5798
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>gb|AC008740.7| Homo sapiens chromosome 16 clone CTD-2547E10, complete sequence
          Length = 158388

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    cagtggtggtgcactcctgta 122
              |||||||||||||||||||||
Sbjct: 150719 cagtggtggtgcactcctgta 150739
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>gb|AC096741.3| Homo sapiens BAC clone RP11-327O17 from 4, complete sequence
          Length = 177300

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 472   cactgagcatatccttcttgg 492
             |||||||||||||||||||||
Sbjct: 75155 cactgagcatatccttcttgg 75175
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 267    aaatcagagatggcggttttc 287
              |||||||||||||||||||||
Sbjct: 134687 aaatcagagatggcggttttc 134707
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>gb|AF001550.1|HSAF001550 Homo sapiens chromosome 16 BAC clone CIT987SK-334D11, complete sequence
          Length = 173882

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    cagtggtggtgcactcctgta 122
              |||||||||||||||||||||
Sbjct: 166892 cagtggtggtgcactcctgta 166872
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>gb|AE003636.4| Drosophila melanogaster chromosome 2L, section 45 of 83 of the complete
             sequence
          Length = 246231

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   ttgtgctgccattttactgcc 177
             |||||||||||||||||||||
Sbjct: 38855 ttgtgctgccattttactgcc 38875
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>gb|AC166776.6| Mus musculus chromosome 5, clone RP23-24K16, complete sequence
          Length = 216652

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     tggaacaaagttgaatttcatgta 24
             ||||||||| ||||||||||||||
Sbjct: 49987 tggaacaaacttgaatttcatgta 50010
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>gb|AC118138.2| Homo sapiens BAC clone RP11-451K15 from 7, complete sequence
          Length = 180150

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    agtggtggtgcactcctgta 122
              ||||||||||||||||||||
Sbjct: 138828 agtggtggtgcactcctgta 138809
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>gb|AC122930.4| Mus musculus BAC clone RP23-13L19 from chromosome 9, complete sequence
          Length = 224108

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     atgtacattctgtatctgta 39
              ||||||||||||||||||||
Sbjct: 133395 atgtacattctgtatctgta 133414
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>gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosome 7, complete sequence
          Length = 199810

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    tacatacaccatacaccagg 85
             ||||||||||||||||||||
Sbjct: 69155 tacatacaccatacaccagg 69174
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>gb|AC004878.3| Homo sapiens PAC clone RP4-754G14 from 7, complete sequence
          Length = 110684

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 58889 agtggtggtgcactcctgta 58908
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>emb|CR533578.7| Zebrafish DNA sequence from clone CH211-216F21 in linkage group 16,
              complete sequence
          Length = 214872

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    taatgtttgatgtaatctct 328
              ||||||||||||||||||||
Sbjct: 117943 taatgtttgatgtaatctct 117924
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>emb|Z97054.1|HS339A18 Human DNA sequence from clone RP3-339A18 on chromosome Xp11.1-11.4
             Contains the 5' end of the SMC1L1 gene for SMC1 structural
             maintenance of chromosomes 1-like 1 (yeast), a novel
             RIB43A domain containing protein (FLJ32783), the HADH2
             gene for hydroxyacyl-Coenzyme A dehydrogenase type II, a
             novel pseudogene (FLJ20516), the 3' end of the gene for
             upstream regulatory element binding protein 1 (UREB1), a
             novel gene and three CpG islands, complete sequence
          Length = 132805

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 56810 agtggtggtgcactcctgta 56829
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>emb|BX284668.4| Human DNA sequence from clone RP11-108M9 on chromosome 1 Contains four
             novel genes, a novel pseudogene, the 5' end of the CROCC
             gene for ciliary rootlet coiled-coil rootletin (KIAA0445)
             and two CpG islands, complete sequence
          Length = 93826

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   gtggtggtgcactcctgtac 123
             ||||||||||||||||||||
Sbjct: 42446 gtggtggtgcactcctgtac 42427
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>emb|AL691442.32| Human DNA sequence from clone RP11-540D14 on chromosome 1 Contains the
             3' end of the ADAM15 gene for a disintegrin and
             metalloproteinase domain 15 (metargidin), the EFNA4 gene
             for ephrin-A4, the EFNA3 gene for ephrin-A3, the EFNA1
             gene for ephrin-A1, the gene for a novel protein
             (LOC55974), the DPM3 gene for dolichyl-phosphate
             mannosyltransferase polypeptide 3 and four CpG islands,
             complete sequence
          Length = 92095

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 13965 agtggtggtgcactcctgta 13946
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>emb|AL603966.9| Human DNA sequence from clone RP11-164N7 on chromosome 10 Contains a
             KIAA0187 pseudogene, a ARF GTPase-activating protein
             (MRIP2) pseudogene, the gene foe a novel protein tyrosine
             phosphatase (fragment) highly similar to DKFZP566K0524 and
             the gene for a novel protein, complete sequence
          Length = 103737

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 61789 agtggtggtgcactcctgta 61808
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>emb|AL591684.7| Human DNA sequence from clone RP11-301J7 on chromosome 10 Contains a
             KIAA0187 pseudogene, the gene for a novel protein similar
             to ARF GTPase-activating protein (MRIP2), the ANXA8 gene
             for annexin A8, the gene for a novel protein and one CpG
             island, complete sequence
          Length = 100066

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 18833 agtggtggtgcactcctgta 18814
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>emb|AL391137.11| Human DNA sequence from clone RP11-144G6 on chromosome 10 Contains a
             KIAA0187 pseudogene, the gene for a novel protein similar
             to ARF GTPase-activating protein (MRIP2), the ANXA8L1 gene
             for annexin A8-like 1, a novel gene, the glutamate
             dehydrogenase pseudogene 8 (GLUDP8), a pseudogene similar
             to part of cathepsin L (CTSL), a novel gene, the gene for
             a novel protein, a dual specificity phosphatase 8 (DUSP8)
             pseudogene, the 5' end of a novel gene and two CpG
             islands, complete sequence
          Length = 178169

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 90841 agtggtggtgcactcctgta 90860
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>emb|AL137802.7| Human DNA sequence from clone RP4-798A10 on chromosome 1 Contains the
             3' end of a novel gene (FLJ10420), three novel genes, the
             5' end of a novel gene and four CpG islands, complete
             sequence
          Length = 88176

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   gtggtggtgcactcctgtac 123
             ||||||||||||||||||||
Sbjct: 74182 gtggtggtgcactcctgtac 74201
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>emb|AL049537.48|HS1164I10 Human DNA sequence from clone RP5-1164I10 on chromosome 20q13.13-13.2
             Contains part of the BIG2 gene for brefeldin A-inhibited
             guanine nucleotide-exchange protein 2, ESTs, STSs, GSSs
             and two CpG islands, complete sequence
          Length = 110028

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 19181 agtggtggtgcactcctgta 19200
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>gb|AC160997.5| Mus musculus BAC clone RP23-68E4 from chromosome 9, complete sequence
          Length = 179142

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 367   acagcagctccttgatcagaccat 390
             ||||||||| ||||||||||||||
Sbjct: 86031 acagcagctgcttgatcagaccat 86054
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>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence
          Length = 1192501

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     ttctgttccagtgaaataca 69
              ||||||||||||||||||||
Sbjct: 869107 ttctgttccagtgaaataca 869126
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>gb|AC134866.3| Homo sapiens BAC clone RP11-1398B17 from 7, complete sequence
          Length = 172963

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 11061 agtggtggtgcactcctgta 11080
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>gb|AC138783.10| Homo sapiens PAC clone RP5-962D3 from 7, complete sequence
          Length = 176141

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    agtggtggtgcactcctgta 122
              ||||||||||||||||||||
Sbjct: 150719 agtggtggtgcactcctgta 150700
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>gb|AC103559.2| Homo sapiens chromosome 3 clone RP11-286L5, complete sequence
          Length = 184133

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    agtggtggtgcactcctgta 122
              ||||||||||||||||||||
Sbjct: 134180 agtggtggtgcactcctgta 134161
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>gb|AE014174.1| Mus musculus piebald deletion region section 2 of 11 of the complete
             sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   cattcttgcagtacacactg 476
             ||||||||||||||||||||
Sbjct: 66200 cattcttgcagtacacactg 66219
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>gb|AC021915.11| Homo sapiens chromosome 8, clone RP11-26M5, complete sequence
          Length = 183101

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 32822 agtggtggtgcactcctgta 32803
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>gb|AC105418.5| Homo sapiens BAC clone RP11-450O3 from 7, complete sequence
          Length = 195834

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 96594 agtggtggtgcactcctgta 96613
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>gb|AC006995.5| Homo sapiens BAC clone RP11-396K3 from 7, complete sequence
          Length = 211531

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    agtggtggtgcactcctgta 122
              ||||||||||||||||||||
Sbjct: 156597 agtggtggtgcactcctgta 156578
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>gb|AC004166.12| Homo sapiens Chromosome 7 BAC Clone 239c10, complete sequence
          Length = 275197

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    agtggtggtgcactcctgta 122
              ||||||||||||||||||||
Sbjct: 188746 agtggtggtgcactcctgta 188765
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>gb|AC021079.4|AC021079 Homo sapiens chromosome 5 clone CTC-202C8, complete sequence
          Length = 109321

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   ttagcattacaaactgctca 211
             ||||||||||||||||||||
Sbjct: 30261 ttagcattacaaactgctca 30242
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>gb|AC005080.2|AC005080 Homo sapiens BAC clone CTA-269P13 from 7q11.2, complete sequence
          Length = 124526

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  agtggtggtgcactcctgta 122
            ||||||||||||||||||||
Sbjct: 5364 agtggtggtgcactcctgta 5383
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>gb|AC005098.2|AC005098 Homo sapiens BAC clone CTA-350L10 from 7q11.2, complete sequence
          Length = 230552

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    agtggtggtgcactcctgta 122
              ||||||||||||||||||||
Sbjct: 201884 agtggtggtgcactcctgta 201903
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>gb|AC004867.5|AC004867 Homo sapiens PAC clone RP4-728P19 from 7, complete sequence
          Length = 143737

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 40882 agtggtggtgcactcctgta 40863
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>gb|AC134616.4| Homo sapiens PAC clone RP4-630L23 from 7, complete sequence
          Length = 136431

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  agtggtggtgcactcctgta 122
            ||||||||||||||||||||
Sbjct: 7354 agtggtggtgcactcctgta 7373
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>gb|AC107956.8| Homo sapiens chromosome 11, clone RP11-452G18, complete sequence
          Length = 188571

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    agtggtggtgcactcctgta 122
              ||||||||||||||||||||
Sbjct: 150394 agtggtggtgcactcctgta 150413
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>gb|AC068630.21| Homo sapiens 3 BAC RP11-289N10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164161

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 39322 agtggtggtgcactcctgta 39341
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>gb|AC003692.1|AC003692 Human Chromosome 11 pac pDJ306b4, complete sequence
          Length = 71664

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 53874 agtggtggtgcactcctgta 53855
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>gb|AC005071.2|AC005071 Homo sapiens clone RG161A02, complete sequence
          Length = 209382

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 89948 agtggtggtgcactcctgta 89929
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>gb|AC102818.16| Mus musculus chromosome 14, clone RP23-78J13, complete sequence
          Length = 127347

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   cattcttgcagtacacactg 476
             ||||||||||||||||||||
Sbjct: 50654 cattcttgcagtacacactg 50673
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>dbj|AP002967.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-648O15, complete
              sequence
          Length = 187568

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    agtggtggtgcactcctgta 122
              ||||||||||||||||||||
Sbjct: 168047 agtggtggtgcactcctgta 168028
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>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence
          Length = 190414

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     tacatacaccatacaccagg 85
              ||||||||||||||||||||
Sbjct: 154978 tacatacaccatacaccagg 154997
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>emb|AL606984.20| Mouse DNA sequence from clone RP23-81D5 on chromosome 4, complete
             sequence
          Length = 104368

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   agtggtggtgcactcctgta 122
             ||||||||||||||||||||
Sbjct: 42850 agtggtggtgcactcctgta 42869


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,117,490
Number of Sequences: 3902068
Number of extensions: 5117490
Number of successful extensions: 128546
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128309
Number of HSP's gapped (non-prelim): 237
length of query: 575
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 552
effective length of database: 17,143,297,704
effective search space: 9463100332608
effective search space used: 9463100332608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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