| Clone Name | rbags38k16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL137078.20| Human DNA sequence from clone RP1-66N13 on chromosome 20 Contains a novel gene (LOC284749) and two novel genes, complete sequence Length = 80725 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 agtcccacagggcatcacct 98 |||||||||||||||||||| Sbjct: 51452 agtcccacagggcatcacct 51471
>gb|AC091885.2| Homo sapiens chromosome 5 clone RP11-116O11, complete sequence Length = 167297 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 tacagaaaaaatacaagtcc 83 |||||||||||||||||||| Sbjct: 155776 tacagaaaaaatacaagtcc 155757
>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome 15 Length = 755217 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 gcattacagaaaaaataca 78 ||||||||||||||||||| Sbjct: 114468 gcattacagaaaaaataca 114486
>gb|AC161821.4| Pan troglodytes BAC clone CH251-507E3 from chromosome 7, complete sequence Length = 211131 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 ttacagaaaaaatacaagt 81 ||||||||||||||||||| Sbjct: 81808 ttacagaaaaaatacaagt 81826
>ref|XM_032945.5| Homo sapiens chromosome 21 open reading frame 25 (C21orf25), mRNA Length = 4783 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 agtcccacagggcatcacc 97 ||||||||||||||||||| Sbjct: 986 agtcccacagggcatcacc 968
>gb|BC062323.1| Homo sapiens chromosome 21 open reading frame 25, mRNA (cDNA clone MGC:71445 IMAGE:5419622), complete cds Length = 2160 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 agtcccacagggcatcacc 97 ||||||||||||||||||| Sbjct: 968 agtcccacagggcatcacc 950
>gb|AC146255.2| Pan troglodytes BAC clone RP43-28B2 from 7, complete sequence Length = 163747 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 ttacagaaaaaatacaagt 81 ||||||||||||||||||| Sbjct: 77617 ttacagaaaaaatacaagt 77635
>gb|AC121889.3| Mus musculus BAC clone RP24-146D9 from chromosome 1, complete sequence Length = 160207 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 agaaaaaatacaagtccca 85 ||||||||||||||||||| Sbjct: 129114 agaaaaaatacaagtccca 129132
>emb|CR933520.10| Zebrafish DNA sequence from clone CH211-28A20 in linkage group 8, complete sequence Length = 165296 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 cattacagaaaaaatacaa 79 ||||||||||||||||||| Sbjct: 63681 cattacagaaaaaatacaa 63663
>gb|AC005053.2| Homo sapiens BAC clone CTB-41D11 from 7, complete sequence Length = 120952 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 ttacagaaaaaatacaagt 81 ||||||||||||||||||| Sbjct: 21694 ttacagaaaaaatacaagt 21712
>emb|AL353622.33| Human DNA sequence from clone RP5-1092A3 on chromosome 1 Contains the 5' end of the DNAJC8 gene for DnaJ (Hsp40) homolog subfamily C member 8, the ATPIF1 gene for ATPase inhibitory factor 1, the SESN2 gene for sestrin 2, the gene for a novel protein (FLJ20045) and a CpG island, complete sequence Length = 157243 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 65 acagaaaaaatacaagtcccaca 87 |||||||| |||||||||||||| Sbjct: 9164 acagaaaagatacaagtcccaca 9186
>gb|AC161207.4| Mus musculus chromosome 1, clone RP23-66G23, complete sequence Length = 197037 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 agaaaaaatacaagtccca 85 ||||||||||||||||||| Sbjct: 127857 agaaaaaatacaagtccca 127839
>emb|Z46373.1|SC8248 S.cerevisiae chromosome XIII cosmid 8248 Length = 25135 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 cattacagaaaaaatacaa 79 ||||||||||||||||||| Sbjct: 5605 cattacagaaaaaatacaa 5623
>emb|CR627455.1| Homo sapiens mRNA; cDNA DKFZp686O198 (from clone DKFZp686O198) Length = 6140 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 agtcccacagggcatcacc 97 ||||||||||||||||||| Sbjct: 1261 agtcccacagggcatcacc 1243
>dbj|AK128550.1| Homo sapiens cDNA FLJ46709 fis, clone TRACH3016264 Length = 4123 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 agtcccacagggcatcacc 97 ||||||||||||||||||| Sbjct: 826 agtcccacagggcatcacc 808
>dbj|AK125120.1| Homo sapiens cDNA FLJ43130 fis, clone CTONG3005713 Length = 4905 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 agtcccacagggcatcacc 97 ||||||||||||||||||| Sbjct: 56 agtcccacagggcatcacc 38
>gb|AC113344.2| Homo sapiens chromosome 5 clone CTD-2382P15, complete sequence Length = 128990 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 56 gaaggcattacagaaaaaa 74 ||||||||||||||||||| Sbjct: 45511 gaaggcattacagaaaaaa 45493
>gb|AC069360.7| Homo sapiens chromosome 11, clone CTD1-2003C8, complete sequence Length = 124409 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 atagcaacaccaagaagca 48 ||||||||||||||||||| Sbjct: 113384 atagcaacaccaagaagca 113402
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 cggatagcaacaccaagaa 45 ||||||||||||||||||| Sbjct: 1023133 cggatagcaacaccaagaa 1023151
>gb|AC090602.16| Homo sapiens chromosome 15, clone RP11-125E1, complete sequence Length = 174707 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 gcattacagaaaaaataca 78 ||||||||||||||||||| Sbjct: 114468 gcattacagaaaaaataca 114486
>gb|AC116535.9| Homo sapiens chromosome 11, clone RP11-685M7, complete sequence Length = 192490 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 atagcaacaccaagaagca 48 ||||||||||||||||||| Sbjct: 179062 atagcaacaccaagaagca 179044
>dbj|AB047785.1| Homo sapiens C21orf25 mRNA, complete cds Length = 2831 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 agtcccacagggcatcacc 97 ||||||||||||||||||| Sbjct: 1487 agtcccacagggcatcacc 1469
>dbj|AB047784.1| Homo sapiens C21orf25 mRNA, complete cds Length = 6345 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 agtcccacagggcatcacc 97 ||||||||||||||||||| Sbjct: 1487 agtcccacagggcatcacc 1469
>dbj|AP001745.1| Homo sapiens genomic DNA, chromosome 21q, section 89/105 Length = 336578 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 agtcccacagggcatcacc 97 ||||||||||||||||||| Sbjct: 76500 agtcccacagggcatcacc 76518
>ref|NM_199050.1| Homo sapiens chromosome 21 open reading frame 25 (C21orf25), mRNA Length = 5827 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 agtcccacagggcatcacc 97 ||||||||||||||||||| Sbjct: 965 agtcccacagggcatcacc 947
>emb|AL833323.1|HSM804636 Homo sapiens mRNA; cDNA DKFZp686G1128 (from clone DKFZp686G1128) Length = 4822 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 agtcccacagggcatcacc 97 ||||||||||||||||||| Sbjct: 986 agtcccacagggcatcacc 968
>gb|AC145974.4| Gallus gallus BAC clone CH261-3L16 from chromosome unknown, complete sequence Length = 201188 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 57 aaggcattacagaaaaaatacaa 79 ||||||||||||||| ||||||| Sbjct: 167547 aaggcattacagaaataatacaa 167525
>dbj|AP001619.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1016E7, MX1-D21S171 region, complete sequence Length = 161226 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 agtcccacagggcatcacc 97 ||||||||||||||||||| Sbjct: 51573 agtcccacagggcatcacc 51591 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,204,271 Number of Sequences: 3902068 Number of extensions: 1204271 Number of successful extensions: 75566 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75511 Number of HSP's gapped (non-prelim): 55 length of query: 103 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 82 effective length of database: 17,151,101,840 effective search space: 1406390350880 effective search space used: 1406390350880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)