ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38k16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL137078.20| Human DNA sequence from clone RP1-66N13 on chro... 40 1.2
2gb|AC091885.2| Homo sapiens chromosome 5 clone RP11-116O11, comp... 40 1.2
3ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome reg... 38 4.6
4gb|AC161821.4| Pan troglodytes BAC clone CH251-507E3 from chromo... 38 4.6
5ref|XM_032945.5| Homo sapiens chromosome 21 open reading frame 2... 38 4.6
6gb|BC062323.1| Homo sapiens chromosome 21 open reading frame 25,... 38 4.6
7gb|AC146255.2| Pan troglodytes BAC clone RP43-28B2 from 7, compl... 38 4.6
8gb|AC121889.3| Mus musculus BAC clone RP24-146D9 from chromosome... 38 4.6
9emb|CR933520.10| Zebrafish DNA sequence from clone CH211-28A20 i... 38 4.6
10gb|AC005053.2| Homo sapiens BAC clone CTB-41D11 from 7, complete... 38 4.6
11emb|AL353622.33| Human DNA sequence from clone RP5-1092A3 on chr... 38 4.6
12gb|AC161207.4| Mus musculus chromosome 1, clone RP23-66G23, comp... 38 4.6
13emb|Z46373.1|SC8248 S.cerevisiae chromosome XIII cosmid 8248 38 4.6
14emb|CR627455.1| Homo sapiens mRNA; cDNA DKFZp686O198 (from clone... 38 4.6
15dbj|AK128550.1| Homo sapiens cDNA FLJ46709 fis, clone TRACH3016264 38 4.6
16dbj|AK125120.1| Homo sapiens cDNA FLJ43130 fis, clone CTONG3005713 38 4.6
17gb|AC113344.2| Homo sapiens chromosome 5 clone CTD-2382P15, comp... 38 4.6
18gb|AC069360.7| Homo sapiens chromosome 11, clone CTD1-2003C8, co... 38 4.6
19dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 38 4.6
20gb|AC090602.16| Homo sapiens chromosome 15, clone RP11-125E1, co... 38 4.6
21gb|AC116535.9| Homo sapiens chromosome 11, clone RP11-685M7, com... 38 4.6
22dbj|AB047785.1| Homo sapiens C21orf25 mRNA, complete cds 38 4.6
23dbj|AB047784.1| Homo sapiens C21orf25 mRNA, complete cds 38 4.6
24dbj|AP001745.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 4.6
25ref|NM_199050.1| Homo sapiens chromosome 21 open reading frame 2... 38 4.6
26emb|AL833323.1|HSM804636 Homo sapiens mRNA; cDNA DKFZp686G1128 (... 38 4.6
27gb|AC145974.4| Gallus gallus BAC clone CH261-3L16 from chromosom... 38 4.6
28dbj|AP001619.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 38 4.6

>emb|AL137078.20| Human DNA sequence from clone RP1-66N13 on chromosome 20 Contains a
             novel gene (LOC284749) and two novel genes, complete
             sequence
          Length = 80725

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    agtcccacagggcatcacct 98
             ||||||||||||||||||||
Sbjct: 51452 agtcccacagggcatcacct 51471



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>gb|AC091885.2| Homo sapiens chromosome 5 clone RP11-116O11, complete sequence
          Length = 167297

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     tacagaaaaaatacaagtcc 83
              ||||||||||||||||||||
Sbjct: 155776 tacagaaaaaatacaagtcc 155757



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>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome
              15
          Length = 755217

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     gcattacagaaaaaataca 78
              |||||||||||||||||||
Sbjct: 114468 gcattacagaaaaaataca 114486



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>gb|AC161821.4| Pan troglodytes BAC clone CH251-507E3 from chromosome 7, complete
             sequence
          Length = 211131

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    ttacagaaaaaatacaagt 81
             |||||||||||||||||||
Sbjct: 81808 ttacagaaaaaatacaagt 81826



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>ref|XM_032945.5| Homo sapiens chromosome 21 open reading frame 25 (C21orf25), mRNA
          Length = 4783

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 79  agtcccacagggcatcacc 97
           |||||||||||||||||||
Sbjct: 986 agtcccacagggcatcacc 968



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>gb|BC062323.1| Homo sapiens chromosome 21 open reading frame 25, mRNA (cDNA clone
           MGC:71445 IMAGE:5419622), complete cds
          Length = 2160

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 79  agtcccacagggcatcacc 97
           |||||||||||||||||||
Sbjct: 968 agtcccacagggcatcacc 950



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>gb|AC146255.2| Pan troglodytes BAC clone RP43-28B2 from 7, complete sequence
          Length = 163747

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    ttacagaaaaaatacaagt 81
             |||||||||||||||||||
Sbjct: 77617 ttacagaaaaaatacaagt 77635



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>gb|AC121889.3| Mus musculus BAC clone RP24-146D9 from chromosome 1, complete sequence
          Length = 160207

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     agaaaaaatacaagtccca 85
              |||||||||||||||||||
Sbjct: 129114 agaaaaaatacaagtccca 129132



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>emb|CR933520.10| Zebrafish DNA sequence from clone CH211-28A20 in linkage group 8,
             complete sequence
          Length = 165296

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 61    cattacagaaaaaatacaa 79
             |||||||||||||||||||
Sbjct: 63681 cattacagaaaaaatacaa 63663



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>gb|AC005053.2| Homo sapiens BAC clone CTB-41D11 from 7, complete sequence
          Length = 120952

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    ttacagaaaaaatacaagt 81
             |||||||||||||||||||
Sbjct: 21694 ttacagaaaaaatacaagt 21712



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>emb|AL353622.33| Human DNA sequence from clone RP5-1092A3 on chromosome 1 Contains the
            5' end of the DNAJC8 gene for DnaJ (Hsp40) homolog
            subfamily C member 8, the ATPIF1 gene for ATPase
            inhibitory factor 1, the SESN2 gene for sestrin 2, the
            gene for a novel protein (FLJ20045) and a CpG island,
            complete sequence
          Length = 157243

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 65   acagaaaaaatacaagtcccaca 87
            |||||||| ||||||||||||||
Sbjct: 9164 acagaaaagatacaagtcccaca 9186



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>gb|AC161207.4| Mus musculus chromosome 1, clone RP23-66G23, complete sequence
          Length = 197037

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 67     agaaaaaatacaagtccca 85
              |||||||||||||||||||
Sbjct: 127857 agaaaaaatacaagtccca 127839



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>emb|Z46373.1|SC8248 S.cerevisiae chromosome XIII cosmid 8248
          Length = 25135

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 61   cattacagaaaaaatacaa 79
            |||||||||||||||||||
Sbjct: 5605 cattacagaaaaaatacaa 5623



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>emb|CR627455.1| Homo sapiens mRNA; cDNA DKFZp686O198 (from clone DKFZp686O198)
          Length = 6140

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 79   agtcccacagggcatcacc 97
            |||||||||||||||||||
Sbjct: 1261 agtcccacagggcatcacc 1243



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>dbj|AK128550.1| Homo sapiens cDNA FLJ46709 fis, clone TRACH3016264
          Length = 4123

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 79  agtcccacagggcatcacc 97
           |||||||||||||||||||
Sbjct: 826 agtcccacagggcatcacc 808



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>dbj|AK125120.1| Homo sapiens cDNA FLJ43130 fis, clone CTONG3005713
          Length = 4905

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 79 agtcccacagggcatcacc 97
          |||||||||||||||||||
Sbjct: 56 agtcccacagggcatcacc 38



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>gb|AC113344.2| Homo sapiens chromosome 5 clone CTD-2382P15, complete sequence
          Length = 128990

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    gaaggcattacagaaaaaa 74
             |||||||||||||||||||
Sbjct: 45511 gaaggcattacagaaaaaa 45493



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>gb|AC069360.7| Homo sapiens chromosome 11, clone CTD1-2003C8, complete sequence
          Length = 124409

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     atagcaacaccaagaagca 48
              |||||||||||||||||||
Sbjct: 113384 atagcaacaccaagaagca 113402



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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 27      cggatagcaacaccaagaa 45
               |||||||||||||||||||
Sbjct: 1023133 cggatagcaacaccaagaa 1023151



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>gb|AC090602.16| Homo sapiens chromosome 15, clone RP11-125E1, complete sequence
          Length = 174707

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     gcattacagaaaaaataca 78
              |||||||||||||||||||
Sbjct: 114468 gcattacagaaaaaataca 114486



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>gb|AC116535.9| Homo sapiens chromosome 11, clone RP11-685M7, complete sequence
          Length = 192490

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     atagcaacaccaagaagca 48
              |||||||||||||||||||
Sbjct: 179062 atagcaacaccaagaagca 179044



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>dbj|AB047785.1| Homo sapiens C21orf25 mRNA, complete cds
          Length = 2831

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 79   agtcccacagggcatcacc 97
            |||||||||||||||||||
Sbjct: 1487 agtcccacagggcatcacc 1469



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>dbj|AB047784.1| Homo sapiens C21orf25 mRNA, complete cds
          Length = 6345

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 79   agtcccacagggcatcacc 97
            |||||||||||||||||||
Sbjct: 1487 agtcccacagggcatcacc 1469



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>dbj|AP001745.1| Homo sapiens genomic DNA, chromosome 21q, section 89/105
          Length = 336578

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    agtcccacagggcatcacc 97
             |||||||||||||||||||
Sbjct: 76500 agtcccacagggcatcacc 76518



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>ref|NM_199050.1| Homo sapiens chromosome 21 open reading frame 25 (C21orf25), mRNA
          Length = 5827

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 79  agtcccacagggcatcacc 97
           |||||||||||||||||||
Sbjct: 965 agtcccacagggcatcacc 947



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>emb|AL833323.1|HSM804636 Homo sapiens mRNA; cDNA DKFZp686G1128 (from clone DKFZp686G1128)
          Length = 4822

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 79  agtcccacagggcatcacc 97
           |||||||||||||||||||
Sbjct: 986 agtcccacagggcatcacc 968



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>gb|AC145974.4| Gallus gallus BAC clone CH261-3L16 from chromosome unknown, complete
              sequence
          Length = 201188

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 57     aaggcattacagaaaaaatacaa 79
              ||||||||||||||| |||||||
Sbjct: 167547 aaggcattacagaaataatacaa 167525



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>dbj|AP001619.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1016E7, MX1-D21S171
             region, complete sequence
          Length = 161226

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    agtcccacagggcatcacc 97
             |||||||||||||||||||
Sbjct: 51573 agtcccacagggcatcacc 51591


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,204,271
Number of Sequences: 3902068
Number of extensions: 1204271
Number of successful extensions: 75566
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75511
Number of HSP's gapped (non-prelim): 55
length of query: 103
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 82
effective length of database: 17,151,101,840
effective search space: 1406390350880
effective search space used: 1406390350880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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