ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38j16 |
|---|---|
| Clone Library Name | barley_pub |
>CUTC_VIBVY (Q7MNH9) Copper homeostasis protein cutC| Length = 250 Score = 33.9 bits (76), Expect = 0.43 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = +2 Query: 239 IIVSGCEHAVRAALGAQGPLGSRARTRLVTHAWMLIGPCCARADCYAGASLAG-RYTEIV 415 II GCE + + L A PLG T+LV H+ +R AGA ++ ++ Sbjct: 140 IIDLGCERILTSGLAASAPLGKEMLTQLVAHSQ-------SRLAIMAGAGVSPVNVADLA 192 Query: 416 VLTNMERLQLAQCRLRPA 469 + T ++ L L+ RP+ Sbjct: 193 LTTGVKELHLSGKSTRPS 210
>CUTC_VIBVU (Q8DEX2) Copper homeostasis protein cutC| Length = 250 Score = 32.7 bits (73), Expect = 0.97 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = +2 Query: 239 IIVSGCEHAVRAALGAQGPLGSRARTRLVTHAWMLIGPCCARADCYAGASLAG-RYTEIV 415 II GCE + + L A PLG T+LV H+ +R AGA ++ ++ Sbjct: 140 IIDLGCERILTSGLAASAPLGKEILTQLVAHSQ-------SRLAIMAGAGVSPVNVADLA 192 Query: 416 VLTNMERLQLAQCRLRPA 469 + T ++ + L+ RP+ Sbjct: 193 LTTGVKEVHLSGKSTRPS 210
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = -2 Query: 413 QFPCTDLPAKPRHSNQPWHSKDRSASRHE*PSVSEPGSPKGPAHREQPGLHVH 255 Q P P+ P+H P H K S + P V P +PK P H + P H Sbjct: 32 QPPHVKPPSTPKHPKDPPHVKPPSTPKQP-PYVKPPTTPKHPPHVKPPSTPKH 83
>GPR25_HUMAN (O00155) Probable G-protein coupled receptor 25| Length = 361 Score = 32.0 bits (71), Expect = 1.7 Identities = 26/75 (34%), Positives = 34/75 (45%) Frame = +2 Query: 263 AVRAALGAQGPLGSRARTRLVTHAWMLIGPCCARADCYAGASLAGRYTEIVVLTNMERLQ 442 A AALG + P G +L + A L G CA A AG S+ RY +V L L+ Sbjct: 96 AAAAALGGRWPFGD-GLCKLSSFA--LAGTRCAGALLLAGMSV-DRYLAVVKLLEARPLR 151 Query: 443 LAQCRLRPACSIGGV 487 +C L C + V Sbjct: 152 TPRCALASCCGVWAV 166
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 11/92 (11%) Frame = -2 Query: 398 DLPAKPRHSNQPWHSKDRSASRHE*PSVSEPGSPKGPAHREQPGL-HVHSQKLLYR---- 234 + P+ H + + + E +PG+P P H PGL H H K +R Sbjct: 199 EAPSPHYHHEHHHNHRHQHLGSSELSENQQPGAPDAPTHPAPPGLHHHHKHKGQHRQGHP 258 Query: 233 ------SSVATEPPKNKICTPKCGRRLRCFSP 156 S + + K+C +C +L C P Sbjct: 259 ENRDMPGSEDIQDLQKKLCRKRCINQLLCKLP 290
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 11/63 (17%) Frame = -2 Query: 311 EPGSPKGPAHREQPGL-HVHSQKLLYR----------SSVATEPPKNKICTPKCGRRLRC 165 +PG+P P H PGL H H K +R +S + + K+C +C +L C Sbjct: 228 QPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKRCINQLLC 287 Query: 164 FSP 156 P Sbjct: 288 KLP 290
>SYS1_STRAW (Q82FK8) Seryl-tRNA synthetase 1 (EC 6.1.1.11) (Serine--tRNA ligase| 1) (SerRS 1) Length = 425 Score = 31.6 bits (70), Expect = 2.2 Identities = 32/126 (25%), Positives = 47/126 (37%) Frame = +2 Query: 197 RFCSWEVRWQLSSGIIVSGCEHAVRAALGAQGPLGSRARTRLVTHAWMLIGPCCARADCY 376 R WE +W ++G E + A G LG+ A + DC Sbjct: 300 RLLEWEKQW-------LTGLELPFQVIDVASGDLGASATRKF---------------DCE 337 Query: 377 AGASLAGRYTEIVVLTNMERLQLAQCRLRPACSIGGVVEVQ*WMNGSLQVCHFPRFVLGH 556 A G+Y E+ +N + Q RL G V+ +NG+L C PR ++ Sbjct: 338 AWIPTQGKYRELTSASNCDSFQAR--RLSVRMRDGKKVQPLATLNGTL--CAVPRTIVAI 393 Query: 557 LHXHAL 574 L H L Sbjct: 394 LENHQL 399
>WETA_PENCH (Q01870) Regulatory protein wetA| Length = 499 Score = 31.2 bits (69), Expect = 2.8 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Frame = -3 Query: 508 HPSLDF--DNSTNGASRTKPTLSKLE-SFHVGKHHNFRVPTCQRSPGIAISPGTARTDQH 338 +PS D D+S + ++ T K + SF+ + HN RSP ++ GT+ D Sbjct: 359 NPSYDMSADHSFSSSNMLPATPQKFDTSFNTSQVHNV-----SRSPSLSPKAGTSPRDTR 413 Query: 337 PGMSNQACPSPGAQRALRTES 275 + QA SP +QR L +S Sbjct: 414 KWIHFQAHSSPHSQRKLSGQS 434
>CBL10_ARATH (Q9LJU0) COBRA-like protein 10 precursor| Length = 672 Score = 30.8 bits (68), Expect = 3.7 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 4/106 (3%) Frame = -3 Query: 496 DFDNSTNGASRTKPTLSKLESFHVGKHHN----FRVPTCQRSPGIAISPGTARTDQHPGM 329 +F N+ GA K S+ G+++ +V CQR P I+ P + D G Sbjct: 273 EFINTMRGAYTHKKDPSECLYSKAGQYYKDLDFSQVMNCQRKPAISDLPPEKKEDNMTGK 332 Query: 328 SNQACPSPGAQRALRTESSPDCMFTARNYYTGAQLPPNLPRTKSVP 191 C + + S MF + + +LPP+L RT P Sbjct: 333 LPFCCKNGTLLPPIMDPSKSRSMFQLQVF----KLPPDLNRTALYP 374
>NNP1_DROME (Q9VJZ7) NNP-1 protein homolog| Length = 687 Score = 30.4 bits (67), Expect = 4.8 Identities = 12/47 (25%), Positives = 24/47 (51%) Frame = -3 Query: 349 TDQHPGMSNQACPSPGAQRALRTESSPDCMFTARNYYTGAQLPPNLP 209 T + P + A P G+ + +R + +C++ +YY +L P +P Sbjct: 606 TPKQPARAEFATPQTGSGKHVRIVTKSNCIYPKSDYYRQLKLSPQVP 652
>VG47_BPMU (Q9T1V2) Protein gp47| Length = 360 Score = 30.4 bits (67), Expect = 4.8 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +3 Query: 399 GTRKLWCLPTWKDSSLLSVGFVL 467 G + WC PTWK + V FV+ Sbjct: 210 GVTRAWCFPTWKGGGTVGVTFVM 232
>C1QR1_HUMAN (Q9NPY3) Complement component C1q receptor precursor (Complement| component 1, q subcomponent, receptor 1) (C1qR) (C1qRp) (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen) (CDw93) Length = 652 Score = 30.0 bits (66), Expect = 6.3 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = -1 Query: 552 PSTKRGKWHT*REPFIHHWTSTTPPMEQAG 463 PS G W REP IHH T+ + P E AG Sbjct: 537 PSGSPGVW---REPSIHHATAASGPQEPAG 563
>CU22_TENMO (P26968) Adult-specific cuticular protein ACP-22 precursor| Length = 199 Score = 30.0 bits (66), Expect = 6.3 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Frame = -2 Query: 614 YESD---TDHQSKGFDIKHEXEDGQVQSAENGTLEESHSSI 501 Y SD DH++K F KHE DG LE H ++ Sbjct: 136 YHSDYHVADHKTKDFKSKHEVRDGYKVKGTYSLLEPDHKTV 176
>RFC1_SCHPO (O60182) Probable activator 1 subunit 1 (Replication factor C| subunit 1) (Replication factor C1) Length = 934 Score = 29.6 bits (65), Expect = 8.2 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +2 Query: 56 HNPQPHFSLMPTNYLSYCI 112 H PQ H+SLMPT+ L C+ Sbjct: 699 HGPQQHWSLMPTHALMSCV 717
>BAG4_HUMAN (O95429) BAG family molecular chaperone regulator 4| (BCL2-associated athanogene 4) (BAG-4) (Silencer of death domains) Length = 457 Score = 29.6 bits (65), Expect = 8.2 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = -2 Query: 452 TEQAGVFPCW*APQFPCTDLPAKPRHSNQPWHSKDRSASRHE*P 321 TE +P +PQ P + +P+ S+ P+ D+S +RH P Sbjct: 272 TESTSPWPSSGSPQSPPSPPVQQPKDSSYPYSQSDQSMNRHNFP 315
>KPC1_COCHE (O42632) Protein kinase C-like (EC 2.7.11.13)| Length = 1174 Score = 29.6 bits (65), Expect = 8.2 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 14/90 (15%) Frame = -3 Query: 400 PTCQRSPGIAISPGTARTDQHPGMSNQACPSPGAQRALRTESSPDCMFTARNYY------ 239 PT +SPG ++D++ Q P PG R SS + AR Y Sbjct: 620 PTQPQSPGQPGQESPTQSDRYSYGKEQMSPPPGPPRQPSYPSSATSVDAARASYSTTGTA 679 Query: 238 --------TGAQLPPNLPRTKSVPLSAVDA 173 T PP+ PRT+S +A A Sbjct: 680 STGAPTSPTSGSRPPSGPRTQSSVAAAAAA 709
>ZN541_MACFA (Q4R2Z8) Zinc finger protein 541| Length = 803 Score = 29.6 bits (65), Expect = 8.2 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = -3 Query: 385 SPGIA--ISPGTARTDQHPGMSNQACPSPGAQRALRTESSPDCMFTAR 248 +PG+A SPG R D G+ A P+P A +L +PD A+ Sbjct: 77 TPGVAREASPGNTRRDAKGGLKVAAVPTPLAAPSLDPSRNPDISSLAK 124 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,589,777 Number of Sequences: 219361 Number of extensions: 2452356 Number of successful extensions: 7417 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 6866 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7398 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
