Clone Information

BLAST Search Result

Clone Name	rbags38j16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_478793.1\| Oryza sativa (japonica cultivar-group), mRNA	131	3e-27
2	ref\|XM_478792.1\| Oryza sativa (japonica cultivar-group), mRNA	131	3e-27
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
4	dbj\|AP005908.3\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
5	dbj\|AP003845.3\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
6	dbj\|AK100426.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	131	3e-27
7	dbj\|AK060818.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	131	3e-27
8	gb\|AF080436.1\|AF080436 Oryza sativa mitogen activated protein ki...	123	8e-25
9	gb\|AY108534.1\| Zea mays PCO137357 mRNA sequence	119	1e-23
10	gb\|AY109196.1\| Zea mays PCO137358 mRNA sequence	96	2e-16
11	emb\|AL021395.16\|HS269M15 Human DNA sequence from clone RP1-269M1...	42	2.3
12	gb\|AF196969.3\| Homo sapiens chromosome X clone LL0XNC01-30I04 ma...	40	8.9
13	ref\|XM_870979.1\| PREDICTED: Bos taurus similar to SH3 and multip...	40	8.9
14	gb\|AC157720.2\| Xenopus tropicalis clone ISB1-273I4, complete seq...	40	8.9
15	gb\|AC115116.6\| Mus musculus BAC clone RP23-62I3 from chromosome ...	40	8.9
16	gb\|AC133956.4\| Mus musculus BAC clone RP23-347E10 from chromosom...	40	8.9
17	emb\|CR848718.8\| Zebrafish DNA sequence from clone DKEY-5N8 in li...	40	8.9
18	gb\|AC138605.1\| Mus musculus BAC clone RP23-392L23 from chromosom...	40	8.9
19	emb\|AL591594.9\| Human DNA sequence from clone RP11-424N15 on chr...	40	8.9
20	emb\|AL359077.10\| Human DNA sequence from clone RP11-176B4 on chr...	40	8.9
21	gb\|AC158910.3\| Mus musculus chromosome 1, clone RP23-181P16, com...	40	8.9
22	emb\|BX927155.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	40	8.9
23	dbj\|BA000036.3\| Corynebacterium glutamicum ATCC 13032 DNA, compl...	40	8.9
24	emb\|AL672129.4\| Zebrafish DNA sequence from clone BUSM1-104F18 i...	40	8.9
25	emb\|AL355836.3\|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8...	40	8.9
26	emb\|AL935307.9\| Zebrafish DNA sequence from clone DKEY-63P22, co...	40	8.9
27	emb\|AL359682.4\|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2...	40	8.9

>ref|XM_478793.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2129

 Score =  131 bits (66), Expect = 3e-27
 Identities = 171/204 (83%), Gaps = 4/204 (1%)
 Strand = Plus / Minus

                                                                        
Query: 381  gggcttcgctggcaggtcggtacacggaaattgtggtgcttaccaacatggaaagactcc 440
            |||||||||| |||||||||||  ||||||||||| | |||||||| ||| |||||||  
Sbjct: 1720 gggcttcgctcgcaggtcggtatgcggaaattgtgattcttaccaatatgaaaagactgt 1661

                                                                        
Query: 441  agcttgctcagtgtaggcttcgtcctgcttgctccattggtggagttgtcgaagtccagt 500
            | |||| |||||| || |||| |||| ||| |||||||     ||||||| |||||||| 
Sbjct: 1660 aacttgttcagtgaagacttcatcctcctttctccattca---agttgtcaaagtccaga 1604

                                                                        
Query: 501  gatggatgaatggctctcttcaagtgtgccattttccgcgctttgtacttggccatcttc 560
            ||||||||||| |||||| | |  |||||||||||||| |||||||| ||||||||||| 
Sbjct: 1603 gatggatgaatagctctccttagatgtgccattttccgtgctttgtatttggccatcttt 1544

                                    
Query: 561  acnttcatgctttatgtcgaaccc 584
            || ||||||||| |||||||||||
Sbjct: 1543 ac-ttcatgcttcatgtcgaaccc 1521



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 76/90 (84%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 147  gaatttacacggcgaaaaa-catcttaggcgtcgaccgcacttaggggtacagattttgt 205
            ||||||||||||| | ||| ||| | |||| || || ||| |||||| ||||||||||||
Sbjct: 1961 gaatttacacggcaagaaagcatttcaggcatcaacagcatttagggttacagattttgt 1902

                                          
Query: 206  tcttgggaggttcggtggcaactgagctcc 235
            ||||||||| || | ||||| |||||||||
Sbjct: 1901 tcttgggagatttgttggcagctgagctcc 1872

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>ref|XM_478792.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2576

 Score =  131 bits (66), Expect = 3e-27
 Identities = 171/204 (83%), Gaps = 4/204 (1%)
 Strand = Plus / Minus

                                                                        
Query: 381  gggcttcgctggcaggtcggtacacggaaattgtggtgcttaccaacatggaaagactcc 440
            |||||||||| |||||||||||  ||||||||||| | |||||||| ||| |||||||  
Sbjct: 1987 gggcttcgctcgcaggtcggtatgcggaaattgtgattcttaccaatatgaaaagactgt 1928

                                                                        
Query: 441  agcttgctcagtgtaggcttcgtcctgcttgctccattggtggagttgtcgaagtccagt 500
            | |||| |||||| || |||| |||| ||| |||||||     ||||||| |||||||| 
Sbjct: 1927 aacttgttcagtgaagacttcatcctcctttctccattca---agttgtcaaagtccaga 1871

                                                                        
Query: 501  gatggatgaatggctctcttcaagtgtgccattttccgcgctttgtacttggccatcttc 560
            ||||||||||| |||||| | |  |||||||||||||| |||||||| ||||||||||| 
Sbjct: 1870 gatggatgaatagctctccttagatgtgccattttccgtgctttgtatttggccatcttt 1811

                                    
Query: 561  acnttcatgctttatgtcgaaccc 584
            || ||||||||| |||||||||||
Sbjct: 1810 ac-ttcatgcttcatgtcgaaccc 1788



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 76/90 (84%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 147  gaatttacacggcgaaaaa-catcttaggcgtcgaccgcacttaggggtacagattttgt 205
            ||||||||||||| | ||| ||| | |||| || || ||| |||||| ||||||||||||
Sbjct: 2228 gaatttacacggcaagaaagcatttcaggcatcaacagcatttagggttacagattttgt 2169

                                          
Query: 206  tcttgggaggttcggtggcaactgagctcc 235
            ||||||||| || | ||||| |||||||||
Sbjct: 2168 tcttgggagatttgttggcagctgagctcc 2139

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  131 bits (66), Expect = 3e-27
 Identities = 171/204 (83%), Gaps = 4/204 (1%)
 Strand = Plus / Minus

                                                                            
Query: 381      gggcttcgctggcaggtcggtacacggaaattgtggtgcttaccaacatggaaagactcc 440
                |||||||||| |||||||||||  ||||||||||| | |||||||| ||| |||||||  
Sbjct: 23095177 gggcttcgctcgcaggtcggtatgcggaaattgtgattcttaccaatatgaaaagactgt 23095118

                                                                            
Query: 441      agcttgctcagtgtaggcttcgtcctgcttgctccattggtggagttgtcgaagtccagt 500
                | |||| |||||| || |||| |||| ||| |||||||     ||||||| |||||||| 
Sbjct: 23095117 aacttgttcagtgaagacttcatcctcctttctccattca---agttgtcaaagtccaga 23095061

                                                                            
Query: 501      gatggatgaatggctctcttcaagtgtgccattttccgcgctttgtacttggccatcttc 560
                ||||||||||| |||||| | |  |||||||||||||| |||||||| ||||||||||| 
Sbjct: 23095060 gatggatgaatagctctccttagatgtgccattttccgtgctttgtatttggccatcttt 23095001

                                        
Query: 561      acnttcatgctttatgtcgaaccc 584
                || ||||||||| |||||||||||
Sbjct: 23095000 ac-ttcatgcttcatgtcgaaccc 23094978



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 76/90 (84%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                            
Query: 147      gaatttacacggcgaaaaa-catcttaggcgtcgaccgcacttaggggtacagattttgt 205
                ||||||||||||| | ||| ||| | |||| || || ||| |||||| ||||||||||||
Sbjct: 23095418 gaatttacacggcaagaaagcatttcaggcatcaacagcatttagggttacagattttgt 23095359

                                              
Query: 206      tcttgggaggttcggtggcaactgagctcc 235
                ||||||||| || | ||||| |||||||||
Sbjct: 23095358 tcttgggagatttgttggcagctgagctcc 23095329

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>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1121_A05
          Length = 172668

 Score =  131 bits (66), Expect = 3e-27
 Identities = 171/204 (83%), Gaps = 4/204 (1%)
 Strand = Plus / Minus

                                                                          
Query: 381    gggcttcgctggcaggtcggtacacggaaattgtggtgcttaccaacatggaaagactcc 440
              |||||||||| |||||||||||  ||||||||||| | |||||||| ||| |||||||  
Sbjct: 170391 gggcttcgctcgcaggtcggtatgcggaaattgtgattcttaccaatatgaaaagactgt 170332

                                                                          
Query: 441    agcttgctcagtgtaggcttcgtcctgcttgctccattggtggagttgtcgaagtccagt 500
              | |||| |||||| || |||| |||| ||| |||||||     ||||||| |||||||| 
Sbjct: 170331 aacttgttcagtgaagacttcatcctcctttctccattca---agttgtcaaagtccaga 170275

                                                                          
Query: 501    gatggatgaatggctctcttcaagtgtgccattttccgcgctttgtacttggccatcttc 560
              ||||||||||| |||||| | |  |||||||||||||| |||||||| ||||||||||| 
Sbjct: 170274 gatggatgaatagctctccttagatgtgccattttccgtgctttgtatttggccatcttt 170215

                                      
Query: 561    acnttcatgctttatgtcgaaccc 584
              || ||||||||| |||||||||||
Sbjct: 170214 ac-ttcatgcttcatgtcgaaccc 170192



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 76/90 (84%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                          
Query: 147    gaatttacacggcgaaaaa-catcttaggcgtcgaccgcacttaggggtacagattttgt 205
              ||||||||||||| | ||| ||| | |||| || || ||| |||||| ||||||||||||
Sbjct: 170632 gaatttacacggcaagaaagcatttcaggcatcaacagcatttagggttacagattttgt 170573

                                            
Query: 206    tcttgggaggttcggtggcaactgagctcc 235
              ||||||||| || | ||||| |||||||||
Sbjct: 170572 tcttgggagatttgttggcagctgagctcc 170543

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>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1699_E05
          Length = 170666

 Score =  131 bits (66), Expect = 3e-27
 Identities = 171/204 (83%), Gaps = 4/204 (1%)
 Strand = Plus / Minus

                                                                         
Query: 381   gggcttcgctggcaggtcggtacacggaaattgtggtgcttaccaacatggaaagactcc 440
             |||||||||| |||||||||||  ||||||||||| | |||||||| ||| |||||||  
Sbjct: 39361 gggcttcgctcgcaggtcggtatgcggaaattgtgattcttaccaatatgaaaagactgt 39302

                                                                         
Query: 441   agcttgctcagtgtaggcttcgtcctgcttgctccattggtggagttgtcgaagtccagt 500
             | |||| |||||| || |||| |||| ||| |||||||     ||||||| |||||||| 
Sbjct: 39301 aacttgttcagtgaagacttcatcctcctttctccattca---agttgtcaaagtccaga 39245

                                                                         
Query: 501   gatggatgaatggctctcttcaagtgtgccattttccgcgctttgtacttggccatcttc 560
             ||||||||||| |||||| | |  |||||||||||||| |||||||| ||||||||||| 
Sbjct: 39244 gatggatgaatagctctccttagatgtgccattttccgtgctttgtatttggccatcttt 39185

                                     
Query: 561   acnttcatgctttatgtcgaaccc 584
             || ||||||||| |||||||||||
Sbjct: 39184 ac-ttcatgcttcatgtcgaaccc 39162



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 76/90 (84%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                         
Query: 147   gaatttacacggcgaaaaa-catcttaggcgtcgaccgcacttaggggtacagattttgt 205
             ||||||||||||| | ||| ||| | |||| || || ||| |||||| ||||||||||||
Sbjct: 39602 gaatttacacggcaagaaagcatttcaggcatcaacagcatttagggttacagattttgt 39543

                                           
Query: 206   tcttgggaggttcggtggcaactgagctcc 235
             ||||||||| || | ||||| |||||||||
Sbjct: 39542 tcttgggagatttgttggcagctgagctcc 39513

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>dbj|AK100426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C06, full
            insert sequence
          Length = 2576

 Score =  131 bits (66), Expect = 3e-27
 Identities = 171/204 (83%), Gaps = 4/204 (1%)
 Strand = Plus / Minus

                                                                        
Query: 381  gggcttcgctggcaggtcggtacacggaaattgtggtgcttaccaacatggaaagactcc 440
            |||||||||| |||||||||||  ||||||||||| | |||||||| ||| |||||||  
Sbjct: 1987 gggcttcgctcgcaggtcggtatgcggaaattgtgattcttaccaatatgaaaagactgt 1928

                                                                        
Query: 441  agcttgctcagtgtaggcttcgtcctgcttgctccattggtggagttgtcgaagtccagt 500
            | |||| |||||| || |||| |||| ||| |||||||     ||||||| |||||||| 
Sbjct: 1927 aacttgttcagtgaagacttcatcctcctttctccattca---agttgtcaaagtccaga 1871

                                                                        
Query: 501  gatggatgaatggctctcttcaagtgtgccattttccgcgctttgtacttggccatcttc 560
            ||||||||||| |||||| | |  |||||||||||||| |||||||| ||||||||||| 
Sbjct: 1870 gatggatgaatagctctccttagatgtgccattttccgtgctttgtatttggccatcttt 1811

                                    
Query: 561  acnttcatgctttatgtcgaaccc 584
            || ||||||||| |||||||||||
Sbjct: 1810 ac-ttcatgcttcatgtcgaaccc 1788



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 76/90 (84%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 147  gaatttacacggcgaaaaa-catcttaggcgtcgaccgcacttaggggtacagattttgt 205
            ||||||||||||| | ||| ||| | |||| || || ||| |||||| ||||||||||||
Sbjct: 2228 gaatttacacggcaagaaagcatttcaggcatcaacagcatttagggttacagattttgt 2169

                                          
Query: 206  tcttgggaggttcggtggcaactgagctcc 235
            ||||||||| || | ||||| |||||||||
Sbjct: 2168 tcttgggagatttgttggcagctgagctcc 2139

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>dbj|AK060818.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A05, full
            insert sequence
          Length = 2129

 Score =  131 bits (66), Expect = 3e-27
 Identities = 171/204 (83%), Gaps = 4/204 (1%)
 Strand = Plus / Minus

                                                                        
Query: 381  gggcttcgctggcaggtcggtacacggaaattgtggtgcttaccaacatggaaagactcc 440
            |||||||||| |||||||||||  ||||||||||| | |||||||| ||| |||||||  
Sbjct: 1720 gggcttcgctcgcaggtcggtatgcggaaattgtgattcttaccaatatgaaaagactgt 1661

                                                                        
Query: 441  agcttgctcagtgtaggcttcgtcctgcttgctccattggtggagttgtcgaagtccagt 500
            | |||| |||||| || |||| |||| ||| |||||||     ||||||| |||||||| 
Sbjct: 1660 aacttgttcagtgaagacttcatcctcctttctccattca---agttgtcaaagtccaga 1604

                                                                        
Query: 501  gatggatgaatggctctcttcaagtgtgccattttccgcgctttgtacttggccatcttc 560
            ||||||||||| |||||| | |  |||||||||||||| |||||||| ||||||||||| 
Sbjct: 1603 gatggatgaatagctctccttagatgtgccattttccgtgctttgtatttggccatcttt 1544

                                    
Query: 561  acnttcatgctttatgtcgaaccc 584
            || ||||||||| |||||||||||
Sbjct: 1543 ac-ttcatgcttcatgtcgaaccc 1521



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 76/90 (84%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 147  gaatttacacggcgaaaaa-catcttaggcgtcgaccgcacttaggggtacagattttgt 205
            ||||||||||||| | ||| ||| | |||| || || ||| |||||| ||||||||||||
Sbjct: 1961 gaatttacacggcaagaaagcatttcaggcatcaacagcatttagggttacagattttgt 1902

                                          
Query: 206  tcttgggaggttcggtggcaactgagctcc 235
            ||||||||| || | ||||| |||||||||
Sbjct: 1901 tcttgggagatttgttggcagctgagctcc 1872

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>gb|AF080436.1|AF080436 Oryza sativa mitogen activated protein kinase kinase (MEK1) mRNA,
            complete cds
          Length = 2432

 Score =  123 bits (62), Expect = 8e-25
 Identities = 170/204 (83%), Gaps = 4/204 (1%)
 Strand = Plus / Minus

                                                                        
Query: 381  gggcttcgctggcaggtcggtacacggaaattgtggtgcttaccaacatggaaagactcc 440
            |||||||||| |||||||||||  ||||||||||| | |||||||| ||| |||||||  
Sbjct: 1974 gggcttcgctcgcaggtcggtatgcggaaattgtgattcttaccaatatgaaaagactgt 1915

                                                                        
Query: 441  agcttgctcagtgtaggcttcgtcctgcttgctccattggtggagttgtcgaagtccagt 500
            | |||| |||||| || |||| |||| ||| |||||||     ||||||| |||||||| 
Sbjct: 1914 aacttgttcagtgaagacttcatcctcctttctccattca---agttgtcaaagtccaga 1858

                                                                        
Query: 501  gatggatgaatggctctcttcaagtgtgccattttccgcgctttgtacttggccatcttc 560
            |||||||||||  ||||| | |  |||||||||||||| |||||||| ||||||||||| 
Sbjct: 1857 gatggatgaatacctctccttagatgtgccattttccgtgctttgtatttggccatcttt 1798

                                    
Query: 561  acnttcatgctttatgtcgaaccc 584
            || ||||||||| |||||||||||
Sbjct: 1797 ac-ttcatgcttcatgtcgaaccc 1775



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 76/90 (84%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 147  gaatttacacggcgaaaaa-catcttaggcgtcgaccgcacttaggggtacagattttgt 205
            ||||||||||||| | ||| ||| | |||| || || ||| |||||| ||||||||||||
Sbjct: 2216 gaatttacacggcaagaaagcatttcaggcatcaacagcatttagggttacagattttgt 2157

                                          
Query: 206  tcttgggaggttcggtggcaactgagctcc 235
            ||||||||| || | ||||| |||||||||
Sbjct: 2156 tcttgggagatttgttggcagctgagctcc 2127

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>gb|AY108534.1| Zea mays PCO137357 mRNA sequence
          Length = 670

 Score =  119 bits (60), Expect = 1e-23
 Identities = 160/190 (84%), Gaps = 4/190 (2%)
 Strand = Plus / Minus

                                                                       
Query: 395 ggtcggtacacggaaattgtggtgcttaccaacatggaaagactccagcttgctcagtgt 454
           ||||||||| |||||| |||||| ||| |||| ||||||||| | ||||||| |||||| 
Sbjct: 253 ggtcggtacccggaaactgtggttctttccaatatggaaagattgcagcttgttcagtga 194

                                                                       
Query: 455 aggcttcgtcctgcttgctccattggtggagttgtcgaagtccagtgatggatgaatggc 514
           ||||||| ||||  || |||||||  || | ||||||||||| || |||||||| || ||
Sbjct: 193 aggcttcatcctatttactccatt--tgca-ttgtcgaagtcaagagatggatggatagc 137

                                                                       
Query: 515 tctcttcaagtgtgccattttccgcgctttgtacttggccatcttcacnttcatgcttta 574
            ||||| || |||||||||||||| |||||||||||||| ||||| ||  |||||||| |
Sbjct: 136 cctctttaactgtgccattttccgtgctttgtacttggcaatctttacc-tcatgcttca 78

                     
Query: 575 tgtcgaaccc 584
           ||||||||||
Sbjct: 77  tgtcgaaccc 68



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                       
Query: 175 cgtcgaccgcacttaggggtacagattttgttcttgggaggttcggtggcaactgagctc 234
           ||||||| |||  ||||||||||||||||||||  ||||| || ||||||||||||||||
Sbjct: 479 cgtcgacagcatgtaggggtacagattttgttcgcgggagatttggtggcaactgagctc 420

              
Query: 235 cgg 237
           |||
Sbjct: 419 cgg 417

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>gb|AY109196.1| Zea mays PCO137358 mRNA sequence
          Length = 647

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 486 ttgtcgaagtccagtgatggatgaatggctctcttcaagtgtgccattttccgcgctttg 545
           ||||||||||| || |||||||| || || ||||| || |||||||||||||| ||||||
Sbjct: 522 ttgtcgaagtcaagagatggatggatagccctcttaaactgtgccattttccgtgctttg 463

                                                  
Query: 546 tacttggccatcttcacnttcatgctttatgtcgaaccc 584
           |||||||| ||||| ||  ||||||||||||||||||||
Sbjct: 462 tacttggcgatctttacc-tcatgctttatgtcgaaccc 425



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 393 caggtcggtacacggaaattgtggtgcttaccaacatggaaagactccagcttgctcagt 452
           ||||| || |||||||||||||||| ||| |||||||||||||| | ||||||| |||||
Sbjct: 612 caggttggcacacggaaattgtggttctttccaacatggaaagattgcagcttgttcagt 553

                   
Query: 453 gtaggctt 460
           | ||||||
Sbjct: 552 gaaggctt 545

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>emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M15 on chromosome 20q12-13.12
             Contains the PPIAL gene for peptidylprolyl isomerase A
             (cyclophilin A)-like pseudogene, the 5' end of the PTPRT
             gene for protein tyrosine phosphatase receptor type T, a
             novel gene and two CpG Islands, complete sequence
          Length = 177562

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 429   tggaaagactccagcttgctc 449
             |||||||||||||||||||||
Sbjct: 76154 tggaaagactccagcttgctc 76134

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>gb|AF196969.3| Homo sapiens chromosome X clone LL0XNC01-30I04 map p11.23, complete
             sequence
          Length = 40403

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   tttctggctgtgaacatgca 265
             ||||||||||||||||||||
Sbjct: 10012 tttctggctgtgaacatgca 9993

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>ref|XM_870979.1| PREDICTED: Bos taurus similar to SH3 and multiple ankyrin repeat
           domains 2 isoform 1 (LOC618649), mRNA
          Length = 4428

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 gggccctttgggctcccggg 308
           ||||||||||||||||||||
Sbjct: 515 gggccctttgggctcccggg 496

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>gb|AC157720.2| Xenopus tropicalis clone ISB1-273I4, complete sequence
          Length = 79009

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    atctttcatactgcatacat 115
             ||||||||||||||||||||
Sbjct: 52268 atctttcatactgcatacat 52249

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>gb|AC115116.6| Mus musculus BAC clone RP23-62I3 from chromosome 1, complete sequence
          Length = 231896

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    tatctttcatactgcataca 114
             ||||||||||||||||||||
Sbjct: 45733 tatctttcatactgcataca 45714

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>gb|AC133956.4| Mus musculus BAC clone RP23-347E10 from chromosome 16, complete
             sequence
          Length = 171261

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 102   catactgcatacataaagaacgaa 125
             ||||||| ||||||||||||||||
Sbjct: 63296 catactgtatacataaagaacgaa 63273

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>emb|CR848718.8| Zebrafish DNA sequence from clone DKEY-5N8 in linkage group 9, complete
              sequence
          Length = 253450

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 497    cagtgatggatgaatggctc 516
              ||||||||||||||||||||
Sbjct: 238150 cagtgatggatgaatggctc 238169

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>gb|AC138605.1| Mus musculus BAC clone RP23-392L23 from chromosome 16, complete
             sequence
          Length = 172684

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 102   catactgcatacataaagaacgaa 125
             ||||||| ||||||||||||||||
Sbjct: 11914 catactgtatacataaagaacgaa 11937

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>emb|AL591594.9| Human DNA sequence from clone RP11-424N15 on chromosome 1 Contains the
             5' end of the ADSS gene for adenylosuccinate synthase, the
             5' end of the gene for a novel protein (DKFZp686A0738,
             FLJ23552) and two CpG islands, complete sequence
          Length = 152313

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 494   gtccagtgatggatgaatgg 513
             ||||||||||||||||||||
Sbjct: 86563 gtccagtgatggatgaatgg 86544

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>emb|AL359077.10| Human DNA sequence from clone RP11-176B4 on chromosome 9 Contains part of
              a novel protein similar to coactivator-associated arginine
              methyltransferase-1 (CARM1), complete sequence
          Length = 182506

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 494    gtccagtgatggatgaatgg 513
              ||||||||||||||||||||
Sbjct: 140986 gtccagtgatggatgaatgg 141005

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>gb|AC158910.3| Mus musculus chromosome 1, clone RP23-181P16, complete sequence
          Length = 195115

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     tatctttcatactgcataca 114
              ||||||||||||||||||||
Sbjct: 176104 tatctttcatactgcataca 176085

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>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 8/10
          Length = 349136

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   gtggtgcttaccaacatgga 432
             ||||||||||||||||||||
Sbjct: 14842 gtggtgcttaccaacatgga 14823

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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 413     gtggtgcttaccaacatgga 432
               ||||||||||||||||||||
Sbjct: 2487666 gtggtgcttaccaacatgga 2487647

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>emb|AL672129.4| Zebrafish DNA sequence from clone BUSM1-104F18 in linkage group 9,
             complete sequence
          Length = 93533

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 497   cagtgatggatgaatggctc 516
             ||||||||||||||||||||
Sbjct: 60591 cagtgatggatgaatggctc 60610

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>emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8L8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166894

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 625   gggcacgatcgctcctggaaagaa 648
             |||||||||| |||||||||||||
Sbjct: 43173 gggcacgatcactcctggaaagaa 43196

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>emb|AL935307.9| Zebrafish DNA sequence from clone DKEY-63P22, complete sequence
          Length = 234744

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 497    cagtgatggatgaatggctc 516
              ||||||||||||||||||||
Sbjct: 137512 cagtgatggatgaatggctc 137493

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>emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2561F5 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 116067

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 625    gggcacgatcgctcctggaaagaa 648
              |||||||||| |||||||||||||
Sbjct: 102648 gggcacgatcactcctggaaagaa 102671


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,795,633
Number of Sequences: 3902068
Number of extensions: 4795633
Number of successful extensions: 84039
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83922
Number of HSP's gapped (non-prelim): 107
length of query: 654
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 631
effective length of database: 17,143,297,704
effective search space: 10817420851224
effective search space used: 10817420851224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result