| Clone Name | rbags38j12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds Length = 983 Score = 1346 bits (679), Expect = 0.0 Identities = 702/711 (98%), Gaps = 1/711 (0%) Strand = Plus / Minus Query: 1 tggcttttatgatagaaataataaaatgaaaatn-taaatgagcacgtgagctagcagct 59 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 958 tggcttttatgatagaaataataaaatgaaaatcataaatgagcacgtgagctagcagct 899 Query: 60 cttattcgggacattattcgcnnnnnnngaagtgctcctattcgggactataccactctg 119 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 898 cttattcgggacattattcgcaaaaaaagaagtgctcctattcgggactataccactctg 839 Query: 120 gtacgtggatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttc 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 838 gtacgtggatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttc 779 Query: 180 ttgatgccaccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctc 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 778 ttgatgccaccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctc 719 Query: 240 tgctttgctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgct 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 718 tgctttgctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgct 659 Query: 300 gtgagagacgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtct 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 658 gtgagagacgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtct 599 Query: 360 tttgggagagcgttgtggcagttgcttagtattttgacgaactcgtcgtcgttaagcata 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 598 tttgggagagcgttgtggcagttgcttagtattttgacgaactcgtcgtcgttaagcata 539 Query: 420 agcgtgatccactgcaagagaaccgcatctccagtgggtatactctcatacatatctcca 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 538 agcgtgatccactgcaagagaaccgcatctccagtgggtatactctcatacatatctcca 479 Query: 480 gccacatgttcgactcctggaagagggaggccttgggcgatgacatgaggcaggtcatag 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 478 gccacatgttcgactcctggaagagggaggccttgggcgatgacatgaggcaggtcatag 419 Query: 540 ttgatgccggtcatgtgcttgtacttagaggtgatcatccctagggtggagccggtgcca 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 ttgatgccggtcatgtgcttgtacttagaggtgatcatccctagggtggagccggtgcca 359 Query: 600 ccaccgacgtccacaagccgctgcacaccatcgaatcccttgaagcgctcgagcatcttg 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 ccaccgacgtccacaagccgctgcacaccatcgaatcccttgaagcgctcgagcatcttg 299 Query: 660 gtgaccaggatcacagagtgctgagccatggcattgtcgaacagtgttccc 710 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 gtgaccaggatcacagagtgctgagccatggcattgtcgaacagtgttccc 248
>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene, complete cds Length = 5238 Score = 801 bits (404), Expect = 0.0 Identities = 427/436 (97%), Gaps = 1/436 (0%) Strand = Plus / Minus Query: 1 tggcttttatgatagaaataataaaatgaaaatn-taaatgagcacgtgagctagcagct 59 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 4861 tggcttttatgatagaaataataaaatgaaaatcataaatgagcacgtgagctagcagct 4802 Query: 60 cttattcgggacattattcgcnnnnnnngaagtgctcctattcgggactataccactctg 119 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 4801 cttattcgggacattattcgcaaaaaaagaagtgctcctattcgggactataccactctg 4742 Query: 120 gtacgtggatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttc 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4741 gtacgtggatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttc 4682 Query: 180 ttgatgccaccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctc 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4681 ttgatgccaccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctc 4622 Query: 240 tgctttgctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgct 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4621 tgctttgctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgct 4562 Query: 300 gtgagagacgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtct 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4561 gtgagagacgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtct 4502 Query: 360 tttgggagagcgttgtggcagttgcttagtattttgacgaactcgtcgtcgttaagcata 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4501 tttgggagagcgttgtggcagttgcttagtattttgacgaactcgtcgtcgttaagcata 4442 Query: 420 agcgtgatccactgca 435 |||||||||||||||| Sbjct: 4441 agcgtgatccactgca 4426 Score = 428 bits (216), Expect = e-116 Identities = 216/216 (100%) Strand = Plus / Minus Query: 495 cctggaagagggaggccttgggcgatgacatgaggcaggtcatagttgatgccggtcatg 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3650 cctggaagagggaggccttgggcgatgacatgaggcaggtcatagttgatgccggtcatg 3591 Query: 555 tgcttgtacttagaggtgatcatccctagggtggagccggtgccaccaccgacgtccaca 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3590 tgcttgtacttagaggtgatcatccctagggtggagccggtgccaccaccgacgtccaca 3531 Query: 615 agccgctgcacaccatcgaatcccttgaagcgctcgagcatcttggtgaccaggatcaca 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3530 agccgctgcacaccatcgaatcccttgaagcgctcgagcatcttggtgaccaggatcaca 3471 Query: 675 gagtgctgagccatggcattgtcgaacagtgttccc 710 |||||||||||||||||||||||||||||||||||| Sbjct: 3470 gagtgctgagccatggcattgtcgaacagtgttccc 3435 Score = 135 bits (68), Expect = 2e-28 Identities = 68/68 (100%) Strand = Plus / Minus Query: 431 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3910 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 3851 Query: 491 gactcctg 498 |||||||| Sbjct: 3850 gactcctg 3843
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 139 bits (70), Expect = 1e-29 Identities = 157/186 (84%) Strand = Plus / Minus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| Sbjct: 5364332 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 5364273 Query: 578 ccctagggtggagccggtgccaccaccgacgtccacaagccgctgcacaccatcgaatcc 637 ||| |||||||| ||| || |||||||| || || ||| |||| || || |||||||| Sbjct: 5364272 ccccagggtggatccgtcacccccaccgacatcgacgagctgctggacgccgtcgaatcc 5364213 Query: 638 cttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgtc 697 | |||||| |||||||||||| ||||||| ||||| || ||||| |||||||| | ||| Sbjct: 5364212 ttggaagcgttcgagcatcttgctgaccagaatcactgaatgctgcgccatggcgtggtc 5364153 Query: 698 gaacag 703 |||||| Sbjct: 5364152 gaacag 5364147 Score = 97.6 bits (49), Expect = 5e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 139 tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 198 ||||||||||||| || ||||| |||||||||||||| | | | ||||||||| | Sbjct: 5374724 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374665 Query: 199 cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 258 |||||| ||||| ||| | |||||||| | |||||||||||| ||| || ||||||||| Sbjct: 5374664 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374605 Query: 259 gcacaaacatgatgatatccaaggtgaatgcatcccg 295 | ||||||||||| ||||||| |||||||| |||||| Sbjct: 5374604 ggacaaacatgatcatatccatggtgaatgaatcccg 5374568 Score = 91.7 bits (46), Expect = 3e-15 Identities = 151/186 (81%) Strand = Plus / Minus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 |||||| ||||||||||||||||||||||| | || ||||| ||| |||||||||| Sbjct: 5172160 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 5172101 Query: 578 ccctagggtggagccggtgccaccaccgacgtccacaagccgctgcacaccatcgaatcc 637 ||| |||||||| ||| ||| |||||| | || || |||||||| | |||||||| || Sbjct: 5172100 ccccagggtggatccgtcgcctccaccggcatcgacgagccgctggatgccatcgaaacc 5172041 Query: 638 cttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgtc 697 | |||||| |||||||||||| | || ||||| | |||||||| |||||||| | ||| Sbjct: 5172040 ttcgaagcgttcgagcatcttgcgggcccggatcgccgagtgctgcgccatggcgtggtc 5171981 Query: 698 gaacag 703 |||||| Sbjct: 5171980 gaacag 5171975 Score = 65.9 bits (33), Expect = 2e-07 Identities = 135/169 (79%) Strand = Plus / Minus Query: 130 gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 189 ||||||| |||||||||| ||||| ||||| |||||||||||||| | || | || Sbjct: 5173415 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173356 Query: 190 cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 249 ||||||| |||| | ||||| ||| | |||||||| | ||| ||||| ||||| || Sbjct: 5173355 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173296 Query: 250 ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 298 |||||||||| ||||||| ||| ||||||| |||||||| |||| |||| Sbjct: 5173295 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173247 Score = 56.0 bits (28), Expect = 2e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 431 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 490 |||||| |||| ||||||||| |||| | ||||||||||||||||||||| | |||||| Sbjct: 5172597 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 5172538
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 105645 Score = 139 bits (70), Expect = 1e-29 Identities = 157/186 (84%) Strand = Plus / Minus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| Sbjct: 36399 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 36340 Query: 578 ccctagggtggagccggtgccaccaccgacgtccacaagccgctgcacaccatcgaatcc 637 ||| |||||||| ||| || |||||||| || || ||| |||| || || |||||||| Sbjct: 36339 ccccagggtggatccgtcacccccaccgacatcgacgagctgctggacgccgtcgaatcc 36280 Query: 638 cttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgtc 697 | |||||| |||||||||||| ||||||| ||||| || ||||| |||||||| | ||| Sbjct: 36279 ttggaagcgttcgagcatcttgctgaccagaatcactgaatgctgcgccatggcgtggtc 36220 Query: 698 gaacag 703 |||||| Sbjct: 36219 gaacag 36214 Score = 97.6 bits (49), Expect = 5e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 139 tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 198 ||||||||||||| || ||||| |||||||||||||| | | | ||||||||| | Sbjct: 46791 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 46732 Query: 199 cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 258 |||||| ||||| ||| | |||||||| | |||||||||||| ||| || ||||||||| Sbjct: 46731 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 46672 Query: 259 gcacaaacatgatgatatccaaggtgaatgcatcccg 295 | ||||||||||| ||||||| |||||||| |||||| Sbjct: 46671 ggacaaacatgatcatatccatggtgaatgaatcccg 46635
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 139 bits (70), Expect = 1e-29 Identities = 157/186 (84%) Strand = Plus / Minus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| Sbjct: 5364321 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 5364262 Query: 578 ccctagggtggagccggtgccaccaccgacgtccacaagccgctgcacaccatcgaatcc 637 ||| |||||||| ||| || |||||||| || || ||| |||| || || |||||||| Sbjct: 5364261 ccccagggtggatccgtcacccccaccgacatcgacgagctgctggacgccgtcgaatcc 5364202 Query: 638 cttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgtc 697 | |||||| |||||||||||| ||||||| ||||| || ||||| |||||||| | ||| Sbjct: 5364201 ttggaagcgttcgagcatcttgctgaccagaatcactgaatgctgcgccatggcgtggtc 5364142 Query: 698 gaacag 703 |||||| Sbjct: 5364141 gaacag 5364136 Score = 97.6 bits (49), Expect = 5e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 139 tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 198 ||||||||||||| || ||||| |||||||||||||| | | | ||||||||| | Sbjct: 5374713 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374654 Query: 199 cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 258 |||||| ||||| ||| | |||||||| | |||||||||||| ||| || ||||||||| Sbjct: 5374653 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374594 Query: 259 gcacaaacatgatgatatccaaggtgaatgcatcccg 295 | ||||||||||| ||||||| |||||||| |||||| Sbjct: 5374593 ggacaaacatgatcatatccatggtgaatgaatcccg 5374557 Score = 91.7 bits (46), Expect = 3e-15 Identities = 151/186 (81%) Strand = Plus / Minus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 |||||| ||||||||||||||||||||||| | || ||||| ||| |||||||||| Sbjct: 5172142 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 5172083 Query: 578 ccctagggtggagccggtgccaccaccgacgtccacaagccgctgcacaccatcgaatcc 637 ||| |||||||| ||| ||| |||||| | || || |||||||| | |||||||| || Sbjct: 5172082 ccccagggtggatccgtcgcctccaccggcatcgacgagccgctggatgccatcgaaacc 5172023 Query: 638 cttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgtc 697 | |||||| |||||||||||| | || ||||| | |||||||| |||||||| | ||| Sbjct: 5172022 ttcgaagcgttcgagcatcttgcgggcccggatcgccgagtgctgcgccatggcgtggtc 5171963 Query: 698 gaacag 703 |||||| Sbjct: 5171962 gaacag 5171957 Score = 65.9 bits (33), Expect = 2e-07 Identities = 135/169 (79%) Strand = Plus / Minus Query: 130 gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 189 ||||||| |||||||||| ||||| ||||| |||||||||||||| | || | || Sbjct: 5173397 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173338 Query: 190 cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 249 ||||||| |||| | ||||| ||| | |||||||| | ||| ||||| ||||| || Sbjct: 5173337 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173278 Query: 250 ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 298 |||||||||| ||||||| ||| ||||||| |||||||| |||| |||| Sbjct: 5173277 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173229 Score = 56.0 bits (28), Expect = 2e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 431 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 490 |||||| |||| ||||||||| |||| | ||||||||||||||||||||| | |||||| Sbjct: 5172579 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 5172520
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 139 bits (70), Expect = 1e-29 Identities = 157/186 (84%) Strand = Plus / Plus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| Sbjct: 101476 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 101535 Query: 578 ccctagggtggagccggtgccaccaccgacgtccacaagccgctgcacaccatcgaatcc 637 ||| |||||||| ||| || |||||||| || || ||| |||| || || |||||||| Sbjct: 101536 ccccagggtggatccgtcacccccaccgacatcgacgagctgctggacgccgtcgaatcc 101595 Query: 638 cttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgtc 697 | |||||| |||||||||||| ||||||| ||||| || ||||| |||||||| | ||| Sbjct: 101596 ttggaagcgttcgagcatcttgctgaccagaatcactgaatgctgcgccatggcgtggtc 101655 Query: 698 gaacag 703 |||||| Sbjct: 101656 gaacag 101661 Score = 97.6 bits (49), Expect = 5e-17 Identities = 130/157 (82%) Strand = Plus / Plus Query: 139 tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 198 ||||||||||||| || ||||| |||||||||||||| | | | ||||||||| | Sbjct: 91084 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 91143 Query: 199 cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 258 |||||| ||||| ||| | |||||||| | |||||||||||| ||| || ||||||||| Sbjct: 91144 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 91203 Query: 259 gcacaaacatgatgatatccaaggtgaatgcatcccg 295 | ||||||||||| ||||||| |||||||| |||||| Sbjct: 91204 ggacaaacatgatcatatccatggtgaatgaatcccg 91240
>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124959 Score = 91.7 bits (46), Expect = 3e-15 Identities = 151/186 (81%) Strand = Plus / Plus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 |||||| ||||||||||||||||||||||| | || ||||| ||| |||||||||| Sbjct: 91439 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 91498 Query: 578 ccctagggtggagccggtgccaccaccgacgtccacaagccgctgcacaccatcgaatcc 637 ||| |||||||| ||| ||| |||||| | || || |||||||| | |||||||| || Sbjct: 91499 ccccagggtggatccgtcgcctccaccggcatcgacgagccgctggatgccatcgaaacc 91558 Query: 638 cttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgtc 697 | |||||| |||||||||||| | || ||||| | |||||||| |||||||| | ||| Sbjct: 91559 ttcgaagcgttcgagcatcttgcgggcccggatcgccgagtgctgcgccatggcgtggtc 91618 Query: 698 gaacag 703 |||||| Sbjct: 91619 gaacag 91624 Score = 65.9 bits (33), Expect = 2e-07 Identities = 135/169 (79%) Strand = Plus / Plus Query: 130 gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 189 ||||||| |||||||||| ||||| ||||| |||||||||||||| | || | || Sbjct: 90184 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 90243 Query: 190 cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 249 ||||||| |||| | ||||| ||| | |||||||| | ||| ||||| ||||| || Sbjct: 90244 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 90303 Query: 250 ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 298 |||||||||| ||||||| ||| ||||||| |||||||| |||| |||| Sbjct: 90304 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 90352 Score = 56.0 bits (28), Expect = 2e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 431 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 490 |||||| |||| ||||||||| |||| | ||||||||||||||||||||| | |||||| Sbjct: 91002 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 91061
>ref|XM_470970.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1065 Score = 75.8 bits (38), Expect = 2e-10 Identities = 118/142 (83%), Gaps = 2/142 (1%) Strand = Plus / Minus Query: 519 atgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatc 578 ||||||||||||||||| |||| | |||||| |||| ||||||| | || ||||||||| Sbjct: 677 atgacatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatc 618 Query: 579 cctagggtggagccggtgccaccaccgacgtccacaagc-cgctgcacaccatcgaatcc 637 | ||||||| ||||||||| || |||||||| || ||| ||||| || || ||||| || Sbjct: 617 tccagggtggcgccggtgcccccgccgacgtcgacgagcacgctg-acgccgtcgaaccc 559 Query: 638 cttgaagcgctcgagcatcttg 659 || ||| |||||||||| |||| Sbjct: 558 ctggaatcgctcgagcagcttg 537
>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15, complete sequence Length = 144778 Score = 75.8 bits (38), Expect = 2e-10 Identities = 118/142 (83%), Gaps = 2/142 (1%) Strand = Plus / Minus Query: 519 atgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatc 578 ||||||||||||||||| |||| | |||||| |||| ||||||| | || ||||||||| Sbjct: 103606 atgacatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatc 103547 Query: 579 cctagggtggagccggtgccaccaccgacgtccacaagc-cgctgcacaccatcgaatcc 637 | ||||||| ||||||||| || |||||||| || ||| ||||| || || ||||| || Sbjct: 103546 tccagggtggcgccggtgcccccgccgacgtcgacgagcacgctg-acgccgtcgaaccc 103488 Query: 638 cttgaagcgctcgagcatcttg 659 || ||| |||||||||| |||| Sbjct: 103487 ctggaatcgctcgagcagcttg 103466
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 75.8 bits (38), Expect = 2e-10 Identities = 118/142 (83%), Gaps = 2/142 (1%) Strand = Plus / Minus Query: 519 atgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatc 578 ||||||||||||||||| |||| | |||||| |||| ||||||| | || ||||||||| Sbjct: 307786 atgacatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatc 307727 Query: 579 cctagggtggagccggtgccaccaccgacgtccacaagc-cgctgcacaccatcgaatcc 637 | ||||||| ||||||||| || |||||||| || ||| ||||| || || ||||| || Sbjct: 307726 tccagggtggcgccggtgcccccgccgacgtcgacgagcacgctg-acgccgtcgaaccc 307668 Query: 638 cttgaagcgctcgagcatcttg 659 || ||| |||||||||| |||| Sbjct: 307667 ctggaatcgctcgagcagcttg 307646 Score = 58.0 bits (29), Expect = 4e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 ||||||||| || ||||| |||| | |||||| || ||||||||| ||||||||||| Sbjct: 5127584 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 5127525 Query: 578 ccctagggtggagccggtgccaccaccgacgtc 610 | | ||||||| ||||||||| || |||||||| Sbjct: 5127524 ctccagggtggcgccggtgcccccgccgacgtc 5127492
>dbj|AK069960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037K22, full insert sequence Length = 1233 Score = 69.9 bits (35), Expect = 1e-08 Identities = 115/139 (82%), Gaps = 2/139 (1%) Strand = Plus / Minus Query: 522 acatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatccct 581 |||||||||||||| |||| | |||||| |||| ||||||| | || ||||||||| | Sbjct: 684 acatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatctcc 625 Query: 582 agggtggagccggtgccaccaccgacgtccacaagc-cgctgcacaccatcgaatccctt 640 ||||||| ||||||||| || |||||||| || ||| ||||| || || ||||| |||| Sbjct: 624 agggtggcgccggtgcccccgccgacgtcgacgagcacgctg-acgccgtcgaacccctg 566 Query: 641 gaagcgctcgagcatcttg 659 ||| |||||||||| |||| Sbjct: 565 gaatcgctcgagcagcttg 547
>ref|XM_474640.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1137 Score = 58.0 bits (29), Expect = 4e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 ||||||||| || ||||| |||| | |||||| || ||||||||| ||||||||||| Sbjct: 747 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 688 Query: 578 ccctagggtggagccggtgccaccaccgacgtc 610 | | ||||||| ||||||||| || |||||||| Sbjct: 687 ctccagggtggcgccggtgcccccgccgacgtc 655
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 58.0 bits (29), Expect = 4e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 ||||||||| || ||||| |||| | |||||| || ||||||||| ||||||||||| Sbjct: 103857 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 103798 Query: 578 ccctagggtggagccggtgccaccaccgacgtc 610 | | ||||||| ||||||||| || |||||||| Sbjct: 103797 ctccagggtggcgccggtgcccccgccgacgtc 103765
>dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D16, full insert sequence Length = 1308 Score = 58.0 bits (29), Expect = 4e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 ||||||||| || ||||| |||| | |||||| || ||||||||| ||||||||||| Sbjct: 773 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 714 Query: 578 ccctagggtggagccggtgccaccaccgacgtc 610 | | ||||||| ||||||||| || |||||||| Sbjct: 713 ctccagggtggcgccggtgcccccgccgacgtc 681
>dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102F20, full insert sequence Length = 1365 Score = 58.0 bits (29), Expect = 4e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 518 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 577 ||||||||| || ||||| |||| | |||||| || ||||||||| ||||||||||| Sbjct: 760 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 701 Query: 578 ccctagggtggagccggtgccaccaccgacgtc 610 | | ||||||| ||||||||| || |||||||| Sbjct: 700 ctccagggtggcgccggtgcccccgccgacgtc 668
>gb|U63634.1|MCU63634 Mesembryanthemum crystallinum inositol methyltransferase (Imt1) gene, complete cds Length = 3929 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 519 atgacatgaggcaggtcatagttgatgcc 547 ||||||||||||| ||||||||||||||| Sbjct: 2808 atgacatgaggcaagtcatagttgatgcc 2780
>gb|M87340.1|CIPIMT1A Mesembryanthemum crystallinum methyl transferase (Imt1) mRNA, complete cds Length = 1494 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 519 atgacatgaggcaggtcatagttgatgcc 547 ||||||||||||| ||||||||||||||| Sbjct: 756 atgacatgaggcaagtcatagttgatgcc 728
>gb|AF067968.1|AF067968 Mesembryanthemum crystallinum caffeic acid 3-O-methyltransferase mRNA, partial cds Length = 1205 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 517 cgatgacatgaggcaggtcatagttgatgcc 547 |||||||||||||||| ||| |||||||||| Sbjct: 666 cgatgacatgaggcagatcaaagttgatgcc 636
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 607 cgtccacaagccgctgcacacc 628 |||||||||||||||||||||| Sbjct: 1987800 cgtccacaagccgctgcacacc 1987779
>emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chromosome 2, complete sequence Length = 220275 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 5 ttttatgatagaaataataaaa 26 |||||||||||||||||||||| Sbjct: 96149 ttttatgatagaaataataaaa 96170
>gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome 6, complete sequence Length = 238262 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 465 tcatacatatctccagccacatgtt 489 |||||||||| |||||||||||||| Sbjct: 237760 tcatacatatatccagccacatgtt 237784
>ref|XM_664595.1| Plasmodium berghei strain ANKA hypothetical protein (PB108243.00.0) partial mRNA Length = 634 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 5 ttttatgatagaaataataaaatgaaaat 33 |||||||| ||| |||||||||||||||| Sbjct: 111 ttttatgaaagatataataaaatgaaaat 83
>gb|AY041136.1| Metopus palaeformis clone 4 alpha-tubulin gene, partial cds Length = 1095 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 gagccggtgccaccaccgacg 608 ||||||||||||||||||||| Sbjct: 326 gagccggtgccaccaccgacg 306
>gb|AY041135.1| Metopus palaeformis clone 3 alpha-tubulin gene, partial cds Length = 1095 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 gagccggtgccaccaccgacg 608 ||||||||||||||||||||| Sbjct: 326 gagccggtgccaccaccgacg 306
>gb|AY041134.1| Metopus palaeformis clone 2 alpha-tubulin gene, partial cds Length = 1094 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 gagccggtgccaccaccgacg 608 ||||||||||||||||||||| Sbjct: 326 gagccggtgccaccaccgacg 306
>gb|AY041133.1| Metopus palaeformis clone 1 alpha-tubulin gene, partial cds Length = 1082 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 gagccggtgccaccaccgacg 608 ||||||||||||||||||||| Sbjct: 313 gagccggtgccaccaccgacg 293
>dbj|AK134874.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430501C11 product:unclassifiable, full insert sequence Length = 1789 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 465 tcatacatatctccagccacatgtt 489 |||||||||| |||||||||||||| Sbjct: 1024 tcatacatatatccagccacatgtt 1048
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 596 gccaccaccgacgtccacaag 616 ||||||||||||||||||||| Sbjct: 4165857 gccaccaccgacgtccacaag 4165837
>gb|AC169981.3| Mus musculus BAC clone RP24-346E16 from chromosome 6, complete sequence Length = 150872 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 465 tcatacatatctccagccacatgtt 489 |||||||||| |||||||||||||| Sbjct: 45951 tcatacatatatccagccacatgtt 45975
>gb|AC079750.5| Homo sapiens BAC clone RP11-33L3 from 2, complete sequence Length = 103089 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 gcttttatgatagaaataata 23 ||||||||||||||||||||| Sbjct: 46170 gcttttatgatagaaataata 46150
>dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLM24 Length = 87487 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tttatgatagaaataataaaa 26 ||||||||||||||||||||| Sbjct: 9619 tttatgatagaaataataaaa 9639
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 157 agttgaagaatatgtaggttttctt 181 |||||||||| |||||||||||||| Sbjct: 313473 agttgaagaaaatgtaggttttctt 313449
>gb|AC005200.1| Homo sapiens chromosome 5, P1 clone 793c5 (LBNL H57), complete sequence Length = 79305 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ttttatgatagaaataataa 24 |||||||||||||||||||| Sbjct: 13493 ttttatgatagaaataataa 13512
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 636 cccttgaagcgctcgagcat 655 |||||||||||||||||||| Sbjct: 406715 cccttgaagcgctcgagcat 406734
>gb|AC150386.2| Branchiostoma floridae clone CH302-103G16, complete sequence Length = 195926 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 587 ggagccggtgccaccaccga 606 |||||||||||||||||||| Sbjct: 156214 ggagccggtgccaccaccga 156233
>ref|XM_960728.1| Neurospora crassa OR74A hypothetical protein (NCU00681.1) partial mRNA Length = 3549 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 ctggaagagggaggccttgg 515 |||||||||||||||||||| Sbjct: 111 ctggaagagggaggccttgg 92
>ref|XM_954671.1| Neurospora crassa OR74A hypothetical protein (NCU02338.1) partial mRNA Length = 843 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 gagggaggccttgggcgatg 521 |||||||||||||||||||| Sbjct: 265 gagggaggccttgggcgatg 246
>ref|XM_324860.1| Neurospora crassa OR74A hypothetical protein (NCU00681.1) partial mRNA Length = 3549 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 ctggaagagggaggccttgg 515 |||||||||||||||||||| Sbjct: 111 ctggaagagggaggccttgg 92
>ref|XM_331113.1| Neurospora crassa OR74A hypothetical protein (NCU02338.1) partial mRNA Length = 843 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 gagggaggccttgggcgatg 521 |||||||||||||||||||| Sbjct: 265 gagggaggccttgggcgatg 246
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 636 cccttgaagcgctcgagcat 655 |||||||||||||||||||| Sbjct: 3254199 cccttgaagcgctcgagcat 3254218
>gb|AC072048.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-189E15, complete sequence Length = 208661 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 agaaataataaaatgaaaat 33 |||||||||||||||||||| Sbjct: 130171 agaaataataaaatgaaaat 130152
>gb|AC093477.6| Mus musculus chromosome 1, clone RP23-58B6, complete sequence Length = 225321 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ttgaagagcacaaacatgat 271 |||||||||||||||||||| Sbjct: 180691 ttgaagagcacaaacatgat 180672
>gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosome 12, complete sequence Length = 150375 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tagaaataataaaatgaaaa 32 |||||||||||||||||||| Sbjct: 54063 tagaaataataaaatgaaaa 54044
>emb|Z67990.1|CEF02D10 Caenorhabditis elegans Cosmid F02D10, complete sequence Length = 25359 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gaactcgtcgtcgttaagca 417 |||||||||||||||||||| Sbjct: 23437 gaactcgtcgtcgttaagca 23418
>emb|BX927322.12| Zebrafish DNA sequence from clone CH211-101J8 in linkage group 21, complete sequence Length = 110730 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 atagaaataataaaatgaaa 31 |||||||||||||||||||| Sbjct: 6531 atagaaataataaaatgaaa 6550
>emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome; segment 1/7 Length = 349391 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 tggcaaactccttctccgtc 236 |||||||||||||||||||| Sbjct: 340353 tggcaaactccttctccgtc 340372
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 636 cccttgaagcgctcgagcat 655 |||||||||||||||||||| Sbjct: 2984071 cccttgaagcgctcgagcat 2984090
>gb|AC163296.2| Mus musculus BAC clone RP23-135F1 from chromosome 12, complete sequence Length = 226483 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tagaaataataaaatgaaaa 32 |||||||||||||||||||| Sbjct: 23725 tagaaataataaaatgaaaa 23706
>gb|AC123904.5| Homo sapiens 12 BAC RP11-361A23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125400 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 aaacatgatgatatccaagg 282 |||||||||||||||||||| Sbjct: 120643 aaacatgatgatatccaagg 120624
>gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete sequence Length = 129658 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 acaaacatgatgatatccaa 280 |||||||||||||||||||| Sbjct: 111959 acaaacatgatgatatccaa 111978
>dbj|AB057033.1| Helicobacter pylori cagA gene for cytotoxin associated protein CagA, partial cds, 3' region, strain:JapanK101 Length = 734 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ttttgggagagcgttgtggc 378 |||||||||||||||||||| Sbjct: 137 ttttgggagagcgttgtggc 118
>dbj|AB057031.1| Helicobacter pylori cagA gene for cytotoxin associated protein CagA, partial cds, 3' region, strain:JapanK89 Length = 734 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ttttgggagagcgttgtggc 378 |||||||||||||||||||| Sbjct: 137 ttttgggagagcgttgtggc 118
>dbj|AB057016.1| Helicobacter pylori cagA gene for cytotoxin associated protein CagA, partial cds, 3' region, strain:JapanK41 Length = 728 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ttttgggagagcgttgtggc 378 |||||||||||||||||||| Sbjct: 137 ttttgggagagcgttgtggc 118
>dbj|AB057015.1| Helicobacter pylori cagA gene for cytotoxin associated protein CagA, partial cds, 3' region, strain:JapanK35 Length = 734 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ttttgggagagcgttgtggc 378 |||||||||||||||||||| Sbjct: 137 ttttgggagagcgttgtggc 118
>gb|AC104246.3| Homo sapiens chromosome 8, clone RP11-1073L1, complete sequence Length = 170284 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gatagaaataataaaatgaa 30 |||||||||||||||||||| Sbjct: 152801 gatagaaataataaaatgaa 152820
>gb|AC027141.7| Homo sapiens chromosome 18, clone RP11-29E21, complete sequence Length = 146286 Score = 40.1 bits (20), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 aataataaaatgaaaatntaaat 39 ||||||||||||||||| ||||| Sbjct: 16579 aataataaaatgaaaatttaaat 16601
>gb|AC090365.7| Homo sapiens chromosome 18, clone RP11-885L22, complete sequence Length = 125792 Score = 40.1 bits (20), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 aataataaaatgaaaatntaaat 39 ||||||||||||||||| ||||| Sbjct: 35428 aataataaaatgaaaatttaaat 35406
>gb|AC008608.7| Homo sapiens chromosome 5 clone CTB-113I20, complete sequence Length = 160672 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ttttatgatagaaataataa 24 |||||||||||||||||||| Sbjct: 23672 ttttatgatagaaataataa 23691
>gb|AF269342.1|AF269342 Staphylococcus epidermidis strain SR1 clone step.1002d03 genomic sequence Length = 3734 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 aaaagttgaagaatatgtag 173 |||||||||||||||||||| Sbjct: 177 aaaagttgaagaatatgtag 158
>gb|AF269321.1|AF269321 Staphylococcus epidermidis strain SR1 clone step.1002a08 genomic sequence Length = 3383 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aaaagttgaagaatatgtag 173 |||||||||||||||||||| Sbjct: 2238 aaaagttgaagaatatgtag 2257
>gb|AC046174.6| Homo sapiens chromosome 8, clone RP11-621B3, complete sequence Length = 161619 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gatagaaataataaaatgaa 30 |||||||||||||||||||| Sbjct: 41177 gatagaaataataaaatgaa 41196
>gb|AC158573.5| Mus musculus chromosome 8, clone RP23-101F17, complete sequence Length = 204567 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 agaaataataaaatgaaaat 33 |||||||||||||||||||| Sbjct: 124180 agaaataataaaatgaaaat 124199
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 628 catcgaatcccttgaagcgc 647 |||||||||||||||||||| Sbjct: 833397 catcgaatcccttgaagcgc 833378
>gb|AC012307.8| Homo sapiens BAC clone RP11-574O17 from 2, complete sequence Length = 145918 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 agaaataataaaatgaaaat 33 |||||||||||||||||||| Sbjct: 79570 agaaataataaaatgaaaat 79589
>gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226538 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 agaaataataaaatgaaaat 33 |||||||||||||||||||| Sbjct: 208362 agaaataataaaatgaaaat 208381
>dbj|AB183825.1| Iris hollandica IhCOMT mRNA for Caffeic acid O-methyltransferase, complete cds Length = 1303 Score = 40.1 bits (20), Expect = 9.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 444 gcatctccagtgggtatactctcatacatatctcca 479 ||||||||| |||| | ||||||| ||||||||||| Sbjct: 788 gcatctccactgggaacactctcaaacatatctcca 753
>gb|AC078842.2|AC078842 Homo sapiens chromosome 7 clone RP11-102G17, complete sequence Length = 173844 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 tgatagaaataataaaatgaaaat 33 ||||| |||||||||||||||||| Sbjct: 3084 tgataaaaataataaaatgaaaat 3061
>gb|AF270232.1|AF270232 Staphylococcus epidermidis strain SR1 clone step.1055e11 genomic sequence Length = 2995 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 aaaagttgaagaatatgtag 173 |||||||||||||||||||| Sbjct: 1549 aaaagttgaagaatatgtag 1530
>gb|AC067918.1|AC067918 Neurospora crassa chromosome 7, clone G23-F12, complete sequence Length = 42412 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 gagggaggccttgggcgatg 521 |||||||||||||||||||| Sbjct: 5744 gagggaggccttgggcgatg 5763
>emb|BX908788.1| Neurospora crassa DNA linkage group VII BAC clone B23N11 Length = 46353 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 gagggaggccttgggcgatg 521 |||||||||||||||||||| Sbjct: 39948 gagggaggccttgggcgatg 39967
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aaaagttgaagaatatgtag 173 |||||||||||||||||||| Sbjct: 226670 aaaagttgaagaatatgtag 226689
>emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in linkage group 18, complete sequence Length = 248419 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cggtaaatccagcttgtttg 209 |||||||||||||||||||| Sbjct: 147510 cggtaaatccagcttgtttg 147491
>emb|AL096821.3|CNS00YVG Human chromosome 14 DNA sequence BAC R-677J5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209111 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tagaaataataaaatgaaaa 32 |||||||||||||||||||| Sbjct: 1709 tagaaataataaaatgaaaa 1728
>emb|AL132719.4|CNS01DTH Human chromosome 14 DNA sequence BAC R-1082A3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171505 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tagaaataataaaatgaaaa 32 |||||||||||||||||||| Sbjct: 153269 tagaaataataaaatgaaaa 153288
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 atgatagaaataataaaatg 28 |||||||||||||||||||| Sbjct: 940104 atgatagaaataataaaatg 940123
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 636 cccttgaagcgctcgagcat 655 |||||||||||||||||||| Sbjct: 1888851 cccttgaagcgctcgagcat 1888832
>gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete sequence Length = 162405 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 ggctagcctggcaaactcct 228 |||||||||||||||||||| Sbjct: 87830 ggctagcctggcaaactcct 87811
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aaaagttgaagaatatgtag 173 |||||||||||||||||||| Sbjct: 342005 aaaagttgaagaatatgtag 342024
>dbj|AP005671.2| Homo sapiens genomic DNA, chromosome 18 clone:CTD-3096M3, complete sequence Length = 86000 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 tcccttgaagagcacaaaca 267 |||||||||||||||||||| Sbjct: 62557 tcccttgaagagcacaaaca 62538
>gb|AC131584.7| Mus musculus chromosome 1, clone RP23-215C21, complete sequence Length = 197346 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ttgaagagcacaaacatgat 271 |||||||||||||||||||| Sbjct: 79901 ttgaagagcacaaacatgat 79882
>emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 in linkage group 18, complete sequence Length = 193827 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cggtaaatccagcttgtttg 209 |||||||||||||||||||| Sbjct: 173244 cggtaaatccagcttgtttg 173225
>gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosome 12, complete sequence Length = 193547 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tagaaataataaaatgaaaa 32 |||||||||||||||||||| Sbjct: 143301 tagaaataataaaatgaaaa 143282
>emb|AL805968.6| Mouse DNA sequence from clone RP23-424G19 on chromosome 4, complete sequence Length = 171320 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 atagaaataataaaatgaaa 31 |||||||||||||||||||| Sbjct: 159096 atagaaataataaaatgaaa 159077 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,439,498 Number of Sequences: 3902068 Number of extensions: 5439498 Number of successful extensions: 114367 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113856 Number of HSP's gapped (non-prelim): 507 length of query: 710 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 687 effective length of database: 17,143,297,704 effective search space: 11777445522648 effective search space used: 11777445522648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)