ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38j07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472402.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 831 Score = 115 bits (58), Expect = 2e-22 Identities = 179/219 (81%), Gaps = 3/219 (1%) Strand = Plus / Minus Query: 272 tcctcttcttctt---ccagaacctgccatagaactgcacggtgcggccgttgagcggct 328 ||||||||||||| |||||||||| |||| |||||||||||||||||| | | ||| Sbjct: 817 tcctcttcttcttcccccagaacctgtggtagagctgcacggtgcggccgttcatctgct 758 Query: 329 gcgtcggcctgttgttgcgcctgtagccttnctccaggggcgcgatcagggcggcggcct 388 ||||||||||| |||| || | |||||||| |||||||| || ||||| ||||||||| Sbjct: 757 gcgtcggcctgctgttccggcggtagccttcgtccaggggagccatcagatcggcggcct 698 Query: 389 gctccatcgtcatctccctcaccctgccgaggatgttccagatgatgttctcggtgcacg 448 ||| | |||||||| ||| | || | ||||||||||||| | |||||||| ||||| Sbjct: 697 gctgcggtgtcatctctctcggcatggcagggatgttccagatcacgttctcggcgcacg 638 Query: 449 gcggcgtggtcagcgacccgacgtaccggtagtacatgt 487 | ||||||||||| ||||| ||||| | |||||| |||| Sbjct: 637 gtggcgtggtcagtgacccaacgtatctgtagtatatgt 599
>dbj|AK059525.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-D02, full insert sequence Length = 1199 Score = 115 bits (58), Expect = 2e-22 Identities = 179/219 (81%), Gaps = 3/219 (1%) Strand = Plus / Minus Query: 272 tcctcttcttctt---ccagaacctgccatagaactgcacggtgcggccgttgagcggct 328 ||||||||||||| |||||||||| |||| |||||||||||||||||| | | ||| Sbjct: 891 tcctcttcttcttcccccagaacctgtggtagagctgcacggtgcggccgttcatctgct 832 Query: 329 gcgtcggcctgttgttgcgcctgtagccttnctccaggggcgcgatcagggcggcggcct 388 ||||||||||| |||| || | |||||||| |||||||| || ||||| ||||||||| Sbjct: 831 gcgtcggcctgctgttccggcggtagccttcgtccaggggagccatcagatcggcggcct 772 Query: 389 gctccatcgtcatctccctcaccctgccgaggatgttccagatgatgttctcggtgcacg 448 ||| | |||||||| ||| | || | ||||||||||||| | |||||||| ||||| Sbjct: 771 gctgcggtgtcatctctctcggcatggcagggatgttccagatcacgttctcggcgcacg 712 Query: 449 gcggcgtggtcagcgacccgacgtaccggtagtacatgt 487 | ||||||||||| ||||| ||||| | |||||| |||| Sbjct: 711 gtggcgtggtcagtgacccaacgtatctgtagtatatgt 673
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04, complete sequence Length = 143301 Score = 83.8 bits (42), Expect = 6e-13 Identities = 103/123 (83%), Gaps = 3/123 (2%) Strand = Plus / Minus Query: 272 tcctcttcttctt---ccagaacctgccatagaactgcacggtgcggccgttgagcggct 328 ||||||||||||| |||||||||| |||| |||||||||||||||||| | | ||| Sbjct: 129323 tcctcttcttcttcccccagaacctgtggtagagctgcacggtgcggccgttcatctgct 129264 Query: 329 gcgtcggcctgttgttgcgcctgtagccttnctccaggggcgcgatcagggcggcggcct 388 ||||||||||| |||| || | |||||||| |||||||| || ||||| ||||||||| Sbjct: 129263 gcgtcggcctgctgttccggcggtagccttcgtccaggggagccatcagatcggcggcct 129204 Query: 389 gct 391 ||| Sbjct: 129203 gct 129201 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 419 ggatgttccagatgatgttctcggtgcacggcggcgtggtcagcgacccgacgtaccggt 478 ||||||||||||| | |||||||| |||||| ||||||||||| ||||| ||||| | || Sbjct: 129037 ggatgttccagatcacgttctcggcgcacggtggcgtggtcagtgacccaacgtatctgt 128978 Query: 479 agtacatgt 487 |||| |||| Sbjct: 128977 agtatatgt 128969
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13, complete sequence Length = 113960 Score = 83.8 bits (42), Expect = 6e-13 Identities = 103/123 (83%), Gaps = 3/123 (2%) Strand = Plus / Minus Query: 272 tcctcttcttctt---ccagaacctgccatagaactgcacggtgcggccgttgagcggct 328 ||||||||||||| |||||||||| |||| |||||||||||||||||| | | ||| Sbjct: 12110 tcctcttcttcttcccccagaacctgtggtagagctgcacggtgcggccgttcatctgct 12051 Query: 329 gcgtcggcctgttgttgcgcctgtagccttnctccaggggcgcgatcagggcggcggcct 388 ||||||||||| |||| || | |||||||| |||||||| || ||||| ||||||||| Sbjct: 12050 gcgtcggcctgctgttccggcggtagccttcgtccaggggagccatcagatcggcggcct 11991 Query: 389 gct 391 ||| Sbjct: 11990 gct 11988 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 419 ggatgttccagatgatgttctcggtgcacggcggcgtggtcagcgacccgacgtaccggt 478 ||||||||||||| | |||||||| |||||| ||||||||||| ||||| ||||| | || Sbjct: 11824 ggatgttccagatcacgttctcggcgcacggtggcgtggtcagtgacccaacgtatctgt 11765 Query: 479 agtacatgt 487 |||| |||| Sbjct: 11764 agtatatgt 11756
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 83.8 bits (42), Expect = 6e-13 Identities = 103/123 (83%), Gaps = 3/123 (2%) Strand = Plus / Minus Query: 272 tcctcttcttctt---ccagaacctgccatagaactgcacggtgcggccgttgagcggct 328 ||||||||||||| |||||||||| |||| |||||||||||||||||| | | ||| Sbjct: 20398690 tcctcttcttcttcccccagaacctgtggtagagctgcacggtgcggccgttcatctgct 20398631 Query: 329 gcgtcggcctgttgttgcgcctgtagccttnctccaggggcgcgatcagggcggcggcct 388 ||||||||||| |||| || | |||||||| |||||||| || ||||| ||||||||| Sbjct: 20398630 gcgtcggcctgctgttccggcggtagccttcgtccaggggagccatcagatcggcggcct 20398571 Query: 389 gct 391 ||| Sbjct: 20398570 gct 20398568 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 419 ggatgttccagatgatgttctcggtgcacggcggcgtggtcagcgacccgacgtaccggt 478 ||||||||||||| | |||||||| |||||| ||||||||||| ||||| ||||| | || Sbjct: 20398404 ggatgttccagatcacgttctcggcgcacggtggcgtggtcagtgacccaacgtatctgt 20398345 Query: 479 agtacatgt 487 |||| |||| Sbjct: 20398344 agtatatgt 20398336
>gb|AC138196.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032M21 map C83B, complete sequence Length = 48636 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 298 tagaactgcacggtgcggccgttgagcggctgcgtcggcct 338 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 5808 tagaactgcacggtgcggccgttgagcggctgcgtcggcct 5768 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Minus Query: 425 tccagatgatgttctcggtgcacggcggcgtggtcagcgacccgacgtaccggtagta 482 |||||| || || ||||||||||||||||| |||||||| ||| |||| ||| |||| Sbjct: 5690 tccagaagacgtcctcggtgcacggcggcgccgtcagcgagccggcgtagcggaagta 5633
>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040B10 map R2918, complete sequence Length = 149132 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 298 tagaactgcacggtgcggccgttgagcggctgcgtcggcct 338 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 124803 tagaactgcacggtgcggccgttgagcggctgcgtcggcct 124763 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Minus Query: 425 tccagatgatgttctcggtgcacggcggcgtggtcagcgacccgacgtaccggtagta 482 |||||| || || ||||||||||||||||| |||||||| ||| |||| ||| |||| Sbjct: 124685 tccagaagacgtcctcggtgcacggcggcgccgtcagcgagccggcgtagcggaagta 124628
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 298 tagaactgcacggtgcggccgttgagcggctgcgtcggcct 338 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2472706 tagaactgcacggtgcggccgttgagcggctgcgtcggcct 2472666 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Minus Query: 425 tccagatgatgttctcggtgcacggcggcgtggtcagcgacccgacgtaccggtagta 482 |||||| || || ||||||||||||||||| |||||||| ||| |||| ||| |||| Sbjct: 2472588 tccagaagacgtcctcggtgcacggcggcgccgtcagcgagccggcgtagcggaagta 2472531
>dbj|AK107061.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E01, full insert sequence Length = 1996 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 298 tagaactgcacggtgcggccgttgagcggctgcgtcggcct 338 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1623 tagaactgcacggtgcggccgttgagcggctgcgtcggcct 1583 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Minus Query: 425 tccagatgatgttctcggtgcacggcggcgtggtcagcgacccgacgtaccggtagta 482 |||||| || || ||||||||||||||||| |||||||| ||| |||| ||| |||| Sbjct: 1505 tccagaagacgtcctcggtgcacggcggcgccgtcagcgagccggcgtagcggaagta 1448
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 298 tagaactgcacggtgcggccgttgagcggctgcgtcggcct 338 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2480442 tagaactgcacggtgcggccgttgagcggctgcgtcggcct 2480402 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Minus Query: 425 tccagatgatgttctcggtgcacggcggcgtggtcagcgacccgacgtaccggtagta 482 |||||| || || ||||||||||||||||| |||||||| ||| |||| ||| |||| Sbjct: 2480324 tccagaagacgtcctcggtgcacggcggcgccgtcagcgagccggcgtagcggaagta 2480267
>ref|XM_364239.1| Magnaporthe grisea 70-15 hypothetical protein (MG09084.4) partial mRNA Length = 3507 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Minus Query: 326 gctgcgtcggcctgttgttgcgcc 349 |||||||||||||||||||||||| Sbjct: 644 gctgcgtcggcctgttgttgcgcc 621
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Minus Query: 435 gttctcggtgcacggcggcgtggtcagcgacccgacgtaccggtagta 482 ||||||| |||||||||||| |||||||| ||| |||||||| |||| Sbjct: 2643841 gttctcgccgcacggcggcgtcgtcagcgagccgccgtaccggaagta 2643794 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 acgtaccggtagtacatgtt 488 |||||||||||||||||||| Sbjct: 14996851 acgtaccggtagtacatgtt 14996832
>dbj|AK070276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047P18, full insert sequence Length = 1256 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Minus Query: 435 gttctcggtgcacggcggcgtggtcagcgacccgacgtaccggtagta 482 ||||||| |||||||||||| |||||||| ||| |||||||| |||| Sbjct: 733 gttctcgccgcacggcggcgtcgtcagcgagccgccgtaccggaagta 686
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Minus Query: 435 gttctcggtgcacggcggcgtggtcagcgacccgacgtaccggtagta 482 ||||||| |||||||||||| |||||||| ||| |||||||| |||| Sbjct: 2643785 gttctcgccgcacggcggcgtcgtcagcgagccgccgtaccggaagta 2643738 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 acgtaccggtagtacatgtt 488 |||||||||||||||||||| Sbjct: 14951134 acgtaccggtagtacatgtt 14951115
>emb|AL929350.3|CNS08CCE Oryza sativa chromosome 12, . BAC OSJNBb0104J15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136490 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Plus Query: 435 gttctcggtgcacggcggcgtggtcagcgacccgacgtaccggtagta 482 ||||||| |||||||||||| |||||||| ||| |||||||| |||| Sbjct: 24168 gttctcgccgcacggcggcgtcgtcagcgagccgccgtaccggaagta 24215
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Minus Query: 435 gttctcggtgcacggcggcgtggtcagcgacccgacgtaccggtagta 482 ||||||| |||||||||||| |||||||| ||| |||||||| |||| Sbjct: 12767 gttctcgccgcacggcggcgtcgtcagcgagccgccgtaccggaagta 12720
>ref|XM_482883.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1128 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Minus Query: 442 gtgcacggcggcgtggtcagcgacccgacgtaccggtagtaca 484 ||||| ||||||||||| |||||||| | ||| |||||||||| Sbjct: 723 gtgcaaggcggcgtggtgagcgaccccatgtagcggtagtaca 681
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 438 ctcggtgcacggcggcgtggtcagcga 464 ||||||||| ||||||||||||||||| Sbjct: 629982 ctcggtgcagggcggcgtggtcagcga 629956
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 442 gtgcacggcggcgtggtcagcgacccgacgtaccggtagtaca 484 ||||| ||||||||||| |||||||| | ||| |||||||||| Sbjct: 23111041 gtgcaaggcggcgtggtgagcgaccccatgtagcggtagtaca 23111083
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 303 ctgcacggtgcggccgttgagcggctgcgtcggcctgttgttgcgcctgta 353 |||||||||||| || ||||| ||||| ||||||||| |||| ||||||| Sbjct: 19658079 ctgcacggtgcgaccattgagtggctgtgtcggcctgcggttgtgcctgta 19658029
>dbj|AP004693.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461F06 Length = 147891 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 442 gtgcacggcggcgtggtcagcgacccgacgtaccggtagtaca 484 ||||| ||||||||||| |||||||| | ||| |||||||||| Sbjct: 34140 gtgcaaggcggcgtggtgagcgaccccatgtagcggtagtaca 34182
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1136H02 Length = 145086 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 303 ctgcacggtgcggccgttgagcggctgcgtcggcctgttgttgcgcctgta 353 |||||||||||| || ||||| ||||| ||||||||| |||| ||||||| Sbjct: 14837 ctgcacggtgcgaccattgagtggctgtgtcggcctgcggttgtgcctgta 14787
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0605D08 Length = 144340 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 303 ctgcacggtgcggccgttgagcggctgcgtcggcctgttgttgcgcctgta 353 |||||||||||| || ||||| ||||| ||||||||| |||| ||||||| Sbjct: 124365 ctgcacggtgcgaccattgagtggctgtgtcggcctgcggttgtgcctgta 124315
>emb|Y11152.1|MGCAH N.gonorrhoeae CAH gene Length = 924 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 442 gtgcacggcggcgtggtcagcga 464 ||||||||||||||||||||||| Sbjct: 788 gtgcacggcggcgtggtcagcga 766
>dbj|AK059773.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-A01, full insert sequence Length = 1128 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Minus Query: 442 gtgcacggcggcgtggtcagcgacccgacgtaccggtagtaca 484 ||||| ||||||||||| |||||||| | ||| |||||||||| Sbjct: 723 gtgcaaggcggcgtggtgagcgaccccatgtagcggtagtaca 681
>gb|AY105354.1| Zea mays PCO087467 mRNA sequence Length = 553 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 298 tagaactgcacggtgcggccgttgagcggctgcgt 332 |||||||| ||||| | |||||||||||||||||| Sbjct: 454 tagaactggacggtcctgccgttgagcggctgcgt 420 Score = 44.1 bits (22), Expect = 0.52 Identities = 40/46 (86%) Strand = Plus / Minus Query: 408 caccctgccgaggatgttccagatgatgttctcggtgcacggcggc 453 |||| ||||||||| | |||||| || |||||||||||| |||||| Sbjct: 353 caccttgccgaggacgctccagacgacgttctcggtgcatggcggc 308
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 442 gtgcacggcggcgtggtcagcga 464 ||||||||||||||||||||||| Sbjct: 559938 gtgcacggcggcgtggtcagcga 559960
>gb|U11547.1|NGU11547 Neisseria gonorrhoeae MS11 UvrB (uvrB) gene, complete cds, and (ORF1) and (ORF2) genes, partial cds Length = 3738 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 442 gtgcacggcggcgtggtcagcga 464 ||||||||||||||||||||||| Sbjct: 3263 gtgcacggcggcgtggtcagcga 3285
>dbj|AB022175.1| Rhodopseudomonas palustris acaP gene for a-type carbonic anhydrase, complete cds Length = 1443 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 444 gcacggcggcgtggtcagcgacccgacgtaccggtagta 482 |||||||||||| ||||||||||| |||| |||||||| Sbjct: 1063 gcacggcggcgtcgtcagcgacccttcgtagcggtagta 1025
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 443 tgcacggcggcgtggtcagcga 464 |||||||||||||||||||||| Sbjct: 4768432 tgcacggcggcgtggtcagcga 4768411
>gb|AE012056.1| Xanthomonas axonopodis pv. citri str. 306, section 434 of 469 of the complete genome Length = 9445 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 443 tgcacggcggcgtggtcagcga 464 |||||||||||||||||||||| Sbjct: 7083 tgcacggcggcgtggtcagcga 7062
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 gggcgcgatcagggcggcggc 386 ||||||||||||||||||||| Sbjct: 2283095 gggcgcgatcagggcggcggc 2283075
>emb|AL137078.20| Human DNA sequence from clone RP1-66N13 on chromosome 20 Contains a novel gene (LOC284749) and two novel genes, complete sequence Length = 80725 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 533 tgggagcacctttctcggccc 553 ||||||||||||||||||||| Sbjct: 59987 tgggagcacctttctcggccc 59967
>gb|AC097502.3| Homo sapiens BAC clone RP11-340B18 from 4, complete sequence Length = 168254 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 actttgttgattagctaaact 26 ||||||||||||||||||||| Sbjct: 112464 actttgttgattagctaaact 112444
>gb|AC105402.5| Homo sapiens BAC clone RP11-1415G13 from 2, complete sequence Length = 65449 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 tcctcttcttcttccagaacc 292 ||||||||||||||||||||| Sbjct: 18434 tcctcttcttcttccagaacc 18454
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 360 ctccaggggcgcgatcagggcggcggcct 388 ||||||| |||||| |||||||||||||| Sbjct: 2152796 ctccaggcgcgcgaccagggcggcggcct 2152768 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 361 tccaggggcgcgatcagggcggcggcctgctcc 393 |||||| |||||| || |||||||||||||||| Sbjct: 1597722 tccaggtgcgcgagcatggcggcggcctgctcc 1597754
>emb|AL928883.19| Mouse DNA sequence from clone RP23-60E18 on chromosome 2, complete sequence Length = 208470 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gcctgctccatcgtcatctcc 405 ||||||||||||||||||||| Sbjct: 93871 gcctgctccatcgtcatctcc 93891
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 319 ttgagcggctgcgtcggcctg 339 ||||||||||||||||||||| Sbjct: 685234 ttgagcggctgcgtcggcctg 685254
>gb|AY570542.1| Oryctolagus cuniculus cerberus-related protein 1 mRNA, partial cds Length = 687 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcttcttccagaacctgcca 297 |||||||||||||||||||| Sbjct: 241 tcttcttccagaacctgcca 222
>gb|AC159422.1| Trypanosoma brucei chromosome 5 clone RPCI93-26C7, complete sequence Length = 144928 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 catcatcgtctccagacatc 243 |||||||||||||||||||| Sbjct: 75815 catcatcgtctccagacatc 75834
>gb|AC161192.12| Mus musculus chromosome 5, clone RP23-382I10, complete sequence Length = 214985 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ttttgtagacaaaagaagga 46 |||||||||||||||||||| Sbjct: 28518 ttttgtagacaaaagaagga 28499
>gb|AC120865.7| Mus musculus chromosome 5, clone RP23-88L6, complete sequence Length = 235287 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ttttgtagacaaaagaagga 46 |||||||||||||||||||| Sbjct: 219070 ttttgtagacaaaagaagga 219051
>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence Length = 1608198 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 catcatcgtctccagacatc 243 |||||||||||||||||||| Sbjct: 1389415 catcatcgtctccagacatc 1389434
>gb|AC159452.1| Trypanosoma brucei chromosome 5 clone RPCI93-5K5, complete sequence Length = 158740 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 catcatcgtctccagacatc 243 |||||||||||||||||||| Sbjct: 91358 catcatcgtctccagacatc 91377
>ref|XM_422573.1| PREDICTED: Gallus gallus similar to myosin-VIIb (LOC424751), mRNA Length = 7302 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ttcctcttcttcttccagaa 290 |||||||||||||||||||| Sbjct: 3279 ttcctcttcttcttccagaa 3260
>gb|DQ386647.1| Astatotilapia burtoni clone BAC 20D21 platelet-derived growth factor receptor beta b (pdgfrbb) and colony-stimulating factor 1 receptor b (csf1rb) genes, complete cds Length = 144596 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 tcatcgtctccagacatcatcatc 249 |||||||||||| ||||||||||| Sbjct: 74963 tcatcgtctccaaacatcatcatc 74986
>ref|XM_584478.2| PREDICTED: Bos taurus similar to kallikrein 4 preproprotein (LOC507800), mRNA Length = 1296 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 tctcggtgcacggcggcgtggtca 460 ||||||||||||| |||||||||| Sbjct: 400 tctcggtgcacgggggcgtggtca 377
>gb|AE009388.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 158 of 187 of the complete sequence Length = 12536 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 cttcttccagaacctgccat 298 |||||||||||||||||||| Sbjct: 1487 cttcttccagaacctgccat 1468
>gb|AE008228.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 32 of 187 of the complete sequence Length = 12215 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 cttcttccagaacctgccat 298 |||||||||||||||||||| Sbjct: 616 cttcttccagaacctgccat 635
>gb|AC151327.2| Xenopus tropicalis clone ISB-291L12, complete sequence Length = 72028 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tacagacaccaaagacctta 95 |||||||||||||||||||| Sbjct: 8435 tacagacaccaaagacctta 8416
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 432 gatgttctcggtgcacggcggcgt 455 ||||||||||||| |||||||||| Sbjct: 703635 gatgttctcggtgtacggcggcgt 703658
>gb|AC092943.5| Homo sapiens 3 BAC RP11-564C24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 89885 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 ttagctaaactttttgtagacaaa 39 |||||||| ||||||||||||||| Sbjct: 24371 ttagctaatctttttgtagacaaa 24394
>gb|AE012371.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 279 of 460 of the complete genome Length = 10772 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 ggtgcacggcggcgtggtca 460 |||||||||||||||||||| Sbjct: 2767 ggtgcacggcggcgtggtca 2748
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 ggcggcggcctgctccatcg 397 |||||||||||||||||||| Sbjct: 3016353 ggcggcggcctgctccatcg 3016372
>gb|AC008876.6| Homo sapiens chromosome 5 clone CTD-2201P10, complete sequence Length = 152707 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 ttgttgattagctaaactttttgt 32 ||||| |||||||||||||||||| Sbjct: 123764 ttgttaattagctaaactttttgt 123741
>gb|AC010482.8| Homo sapiens chromosome 5 clone CTD-2318J2, complete sequence Length = 203278 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 ttgttgattagctaaactttttgt 32 ||||| |||||||||||||||||| Sbjct: 16559 ttgttaattagctaaactttttgt 16536
>gb|AC008568.7| Homo sapiens chromosome 5 clone CTC-546K23, complete sequence Length = 152706 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 ttgttgattagctaaactttttgt 32 ||||| |||||||||||||||||| Sbjct: 28944 ttgttaattagctaaactttttgt 28967
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 ggtgcacggcggcgtggtca 460 |||||||||||||||||||| Sbjct: 1832826 ggtgcacggcggcgtggtca 1832845
>gb|AY507363.1| Isotachis multiceps ATP synthase beta subunit (atpB) gene, partial cds; chloroplast Length = 1145 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 acaaaagaaggatcgatcac 54 |||||||||||||||||||| Sbjct: 631 acaaaagaaggatcgatcac 650
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 ccaggggcgcgatcagggcg 381 |||||||||||||||||||| Sbjct: 2724051 ccaggggcgcgatcagggcg 2724070
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 174521 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 acgtaccggtagtacatgtt 488 |||||||||||||||||||| Sbjct: 84996 acgtaccggtagtacatgtt 85015
>gb|AC109446.2| Homo sapiens chromosome 16 clone CTD-2576D5, complete sequence Length = 193519 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 acatttagttaaccaaattc 114 |||||||||||||||||||| Sbjct: 3855 acatttagttaaccaaattc 3836 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,019,916 Number of Sequences: 3902068 Number of extensions: 5019916 Number of successful extensions: 108430 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107298 Number of HSP's gapped (non-prelim): 1132 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
