ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2f21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472426.1| Oryza sativa (japonica cultivar-group), predic... 319 6e-84
2emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4,... 167 5e-38
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
4ref|XM_784226.1| PREDICTED: Strongylocentrotus purpuratus simila... 50 0.008
5ref|XM_790613.1| PREDICTED: Strongylocentrotus purpuratus simila... 50 0.008
6gb|AC154401.2| Mus musculus BAC clone RP23-166O7 from 13, comple... 46 0.13
7gb|AC150566.16| Medicago truncatula clone mth2-21o10, complete s... 44 0.52
8gb|AC127021.25| Medicago truncatula clone mth2-5e5, complete seq... 44 0.52
9gb|AE006470.1| Chlorobium tepidum TLS, complete genome 44 0.52
10gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, compl... 44 0.52
11ref|NM_191282.1| Oryza sativa (japonica cultivar-group), predic... 42 2.0
12gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genom... 42 2.0
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.0
14ref|XM_800985.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.0
15emb|CR695331.2|CNS0FZGV Tetraodon nigroviridis full-length cDNA 42 2.0
16emb|CR684217.2|CNS0FQW5 Tetraodon nigroviridis full-length cDNA 42 2.0
17emb|CR681180.2|CNS0FOJS Tetraodon nigroviridis full-length cDNA 42 2.0
18emb|CR670864.2|CNS0FGLY Tetraodon nigroviridis full-length cDNA 42 2.0
19ref|XM_844186.1| PREDICTED: Canis familiaris similar to Growth-a... 42 2.0
20emb|CR657338.2|CNS0F668 Tetraodon nigroviridis full-length cDNA 42 2.0
21emb|AL109837.22|HS1128N12 Human DNA sequence from clone RP5-1128... 42 2.0
22gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genom... 42 2.0
23gb|AC175659.3| Mus musculus chromosome 5, clone wi1-764I16, comp... 42 2.0
24gb|AC158757.6| Mus musculus chromosome 5, clone RP23-64D3, compl... 42 2.0
25gb|AC157802.8| Mus musculus chromosome 1, clone RP24-297D18, com... 42 2.0
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
27dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
28gb|AC026179.5|AC026179 Homo sapiens chromosome 3 clone RP11-264H... 42 2.0
29gb|AC066584.6|AC066584 Homo sapiens chromosome 3 clone RP11-244G... 42 2.0
30dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
31dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
32gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 2.0
33gb|AC120370.9| Mus musculus chromosome 1, clone RP24-441N3, comp... 42 2.0
34gb|AC023485.6| Homo sapiens chromosome 3 clone RP11-489D19 map 3... 42 2.0
35ref|XM_323049.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.1
36ref|XM_956002.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.1
37ref|XM_001004260.1| PREDICTED: Mus musculus similar to gonadotro... 40 8.1
38ref|XM_001004254.1| PREDICTED: Mus musculus similar to gonadotro... 40 8.1
39ref|XM_974499.1| PREDICTED: Mus musculus similar to gonadotropin... 40 8.1
40ref|XM_974465.1| PREDICTED: Mus musculus similar to gonadotropin... 40 8.1
41emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete ch... 40 8.1
42gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete se... 40 8.1
43gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete se... 40 8.1
44emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 8.1
45emb|BX640432.1| Bordetella parapertussis strain 12822, complete ... 40 8.1
46emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 40 8.1
47emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom... 40 8.1
48emb|AL513443.1|NC93G11 Neurospora crassa DNA linkage group V Cos... 40 8.1
49dbj|AK141151.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 8.1
50emb|CR318639.6| Mouse DNA sequence from clone RP23-317N11 on chr... 40 8.1
51emb|CR354442.5| Mouse DNA sequence from clone RP24-562O19 on chr... 40 8.1
52gb|AE004766.1| Pseudomonas aeruginosa PAO1, section 327 of 529 o... 40 8.1
53gb|AF019931.1|AF019931 Desulfuromonas sp. FD-1 16S ribosomal RNA... 40 8.1
54emb|BX842661.2| Mouse DNA sequence from clone RP24-137B4 on chro... 40 8.1
55emb|BX682537.3| Mouse DNA sequence from clone RP23-376N23 on chr... 40 8.1
56emb|BX511235.10| Mouse DNA sequence from clone RP23-232H13 on ch... 40 8.1
57emb|BX284639.15| Mouse DNA sequence from clone RP24-87L14 on chr... 40 8.1
58emb|AL845476.15| Mouse DNA sequence from clone RP23-355G16 on ch... 40 8.1
59emb|BX005149.16| Mouse DNA sequence from clone RP24-574J13 on ch... 40 8.1
60emb|CT010482.9| Mouse DNA sequence from clone RP23-282O12 on chr... 40 8.1
61emb|CR955031.3| Mouse DNA sequence from clone RP24-395K22 on chr... 40 8.1
62emb|BX294394.4| Mouse DNA sequence from clone RP24-63F2 on chrom... 40 8.1
63emb|BX000464.8| Mouse DNA sequence from clone RP23-166A1 on chro... 40 8.1
64emb|CR848808.14| Mouse DNA sequence from clone RP23-442I10 on ch... 40 8.1 
>ref|XM_472426.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 564

 Score =  319 bits (161), Expect = 6e-84
 Identities = 257/289 (88%)
 Strand = Plus / Minus

                                                                       
Query: 221 gatcttccctatccagttggcgaccaccggcgtcagcgccacagtcggcgggaaccttat 280
           |||| |||| |||||| |||| |||||||||||||||||||| |||||||||||||| ||
Sbjct: 546 gatcctcccaatccagctggccaccaccggcgtcagcgccaccgtcggcgggaacctgat 487

                                                                       
Query: 281 cggcgacgctgccttatgcgcggcgtaggccagcgcgaatgtccccaccttgcctccggt 340
           ||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 486 cggcgacgccgccttgtgcgccgcgtaggccagcgcgaacgtccccaccttccctcccgt 427

                                                                       
Query: 341 ctcgtccgtggcgatcccaatcttgccgagcagctgctggacgtcgacgccggcgttgat 400
           |||  |||| |||||||||| ||||||||| || | ||| ||||||||||||||| ||| 
Sbjct: 426 ctcccccgtcgcgatcccaaccttgccgaggaggtcctgcacgtcgacgccggcgctgac 367

                                                                       
Query: 401 gaggaggtagcatgcggtgaaggagatgagcgagagcgtgatcgaggtggccaggtacgc 460
           ||||||||||||    |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 366 gaggaggtagcagagcgtgaaggagatgagcgagagcgtgatcgaggtcgccaggtacgc 307

                                                            
Query: 461 gccgccgtacttgcccaggagctccttggcctggtcagttctcgacttc 509
           ||||||||||||| ||||||||||||| ||||| || || |||||||||
Sbjct: 306 gccgccgtacttggccaggagctccttcgcctgctccgtcctcgacttc 258



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 560 tttccagaggccgacctcgaggccg 584
           |||||||||||||| ||||||||||
Sbjct: 213 tttccagaggccgaactcgaggccg 189
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>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12,
             complete sequence
          Length = 116952

 Score =  167 bits (84), Expect = 5e-38
 Identities = 132/148 (89%)
 Strand = Plus / Minus

                                                                         
Query: 362   cttgccgagcagctgctggacgtcgacgccggcgttgatgaggaggtagcatgcggtgaa 421
             ||||||||| || | ||| ||||||||||||||| ||| ||||||||||||    |||||
Sbjct: 69084 cttgccgaggaggtcctgcacgtcgacgccggcgctgacgaggaggtagcagagcgtgaa 69025

                                                                         
Query: 422   ggagatgagcgagagcgtgatcgaggtggccaggtacgcgccgccgtacttgcccaggag 481
             ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 69024 ggagatgagcgagagcgtgatcgaggtcgccaggtacgcgccgccgtacttggccaggag 68965

                                         
Query: 482   ctccttggcctggtcagttctcgacttc 509
             |||||| ||||| || || |||||||||
Sbjct: 68964 ctccttcgcctgctccgtcctcgacttc 68937



 Score =  159 bits (80), Expect = 1e-35
 Identities = 125/140 (89%)
 Strand = Plus / Minus

                                                                         
Query: 221   gatcttccctatccagttggcgaccaccggcgtcagcgccacagtcggcgggaaccttat 280
             |||| |||| |||||| |||| |||||||||||||||||||| |||||||||||||| ||
Sbjct: 69316 gatcctcccaatccagctggccaccaccggcgtcagcgccaccgtcggcgggaacctgat 69257

                                                                         
Query: 281   cggcgacgctgccttatgcgcggcgtaggccagcgcgaatgtccccaccttgcctccggt 340
             ||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 69256 cggcgacgccgccttgtgcgccgcgtaggccagcgcgaacgtccccaccttccctcccgt 69197

                                 
Query: 341   ctcgtccgtggcgatcccaa 360
             |||  |||| ||||||||||
Sbjct: 69196 ctcccccgtcgcgatcccaa 69177



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 560   tttccagaggccgacctcgaggccg 584
             |||||||||||||| ||||||||||
Sbjct: 68814 tttccagaggccgaactcgaggccg 68790
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  167 bits (84), Expect = 5e-38
 Identities = 132/148 (89%)
 Strand = Plus / Minus

                                                                            
Query: 362      cttgccgagcagctgctggacgtcgacgccggcgttgatgaggaggtagcatgcggtgaa 421
                ||||||||| || | ||| ||||||||||||||| ||| ||||||||||||    |||||
Sbjct: 20558456 cttgccgaggaggtcctgcacgtcgacgccggcgctgacgaggaggtagcagagcgtgaa 20558397

                                                                            
Query: 422      ggagatgagcgagagcgtgatcgaggtggccaggtacgcgccgccgtacttgcccaggag 481
                ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 20558396 ggagatgagcgagagcgtgatcgaggtcgccaggtacgcgccgccgtacttggccaggag 20558337

                                            
Query: 482      ctccttggcctggtcagttctcgacttc 509
                |||||| ||||| || || |||||||||
Sbjct: 20558336 ctccttcgcctgctccgtcctcgacttc 20558309



 Score =  159 bits (80), Expect = 1e-35
 Identities = 125/140 (89%)
 Strand = Plus / Minus

                                                                            
Query: 221      gatcttccctatccagttggcgaccaccggcgtcagcgccacagtcggcgggaaccttat 280
                |||| |||| |||||| |||| |||||||||||||||||||| |||||||||||||| ||
Sbjct: 20558688 gatcctcccaatccagctggccaccaccggcgtcagcgccaccgtcggcgggaacctgat 20558629

                                                                            
Query: 281      cggcgacgctgccttatgcgcggcgtaggccagcgcgaatgtccccaccttgcctccggt 340
                ||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 20558628 cggcgacgccgccttgtgcgccgcgtaggccagcgcgaacgtccccaccttccctcccgt 20558569

                                    
Query: 341      ctcgtccgtggcgatcccaa 360
                |||  |||| ||||||||||
Sbjct: 20558568 ctcccccgtcgcgatcccaa 20558549



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 560      tttccagaggccgacctcgaggccg 584
                |||||||||||||| ||||||||||
Sbjct: 20558186 tttccagaggccgaactcgaggccg 20558162
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>ref|XM_784226.1| PREDICTED: Strongylocentrotus purpuratus similar to leucine-rich
            repeat-containing G protein-coupled receptor 7
            (LOC584366), mRNA
          Length = 3090

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 382  cgtcgacgccggcgttgatgaggaggtag 410
            |||||||||||||| ||||||||||||||
Sbjct: 2107 cgtcgacgccggcgatgatgaggaggtag 2079
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>ref|XM_790613.1| PREDICTED: Strongylocentrotus purpuratus similar to G protein
           coupled receptor affecting testicular descent
           (LOC591029), mRNA
          Length = 1932

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 382 cgtcgacgccggcgttgatgaggaggtag 410
           |||||||||||||| ||||||||||||||
Sbjct: 949 cgtcgacgccggcgatgatgaggaggtag 921
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>gb|AC154401.2| Mus musculus BAC clone RP23-166O7 from 13, complete sequence
          Length = 199694

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 44    ttttacaagagcagcaaacatcc 66
             |||||||||||||||||||||||
Sbjct: 27873 ttttacaagagcagcaaacatcc 27895
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>gb|AC150566.16| Medicago truncatula clone mth2-21o10, complete sequence
          Length = 130981

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 55   cagcaaacatccaaaacaagta 76
            ||||||||||||||||||||||
Sbjct: 7541 cagcaaacatccaaaacaagta 7562
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>gb|AC127021.25| Medicago truncatula clone mth2-5e5, complete sequence
          Length = 139116

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 55     cagcaaacatccaaaacaagta 76
              ||||||||||||||||||||||
Sbjct: 136495 cagcaaacatccaaaacaagta 136516
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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 448    tggccaggtacgcgccgccgta 469
              ||||||||||||||||||||||
Sbjct: 875961 tggccaggtacgcgccgccgta 875982
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>gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, complete sequence
          Length = 144031

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 52     gagcagcaaacatccaaaacaagtag 77
              ||||||||||||||||||| ||||||
Sbjct: 140967 gagcagcaaacatccaaaaaaagtag 140992
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>ref|NM_191282.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1170

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 421 aggagatgagcgagagcgtga 441
           |||||||||||||||||||||
Sbjct: 713 aggagatgagcgagagcgtga 733
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>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence,
            complete sequence
          Length = 150743

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 376  gctggacgtcgacgccggcgt 396
            |||||||||||||||||||||
Sbjct: 5071 gctggacgtcgacgccggcgt 5051
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 376      gctggacgtcgacgccggcgt 396
                |||||||||||||||||||||
Sbjct: 31675596 gctggacgtcgacgccggcgt 31675616
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>ref|XM_800985.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506317.10) partial mRNA
          Length = 1908

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 373  gctgctggacgtcgacgccgg 393
            |||||||||||||||||||||
Sbjct: 1308 gctgctggacgtcgacgccgg 1328
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>emb|CR695331.2|CNS0FZGV Tetraodon nigroviridis full-length cDNA
          Length = 934

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 371 cagctgctggacgtcgacgccggcg 395
           ||||||||||||| |||||||||||
Sbjct: 427 cagctgctggacggcgacgccggcg 451
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>emb|CR684217.2|CNS0FQW5 Tetraodon nigroviridis full-length cDNA
          Length = 932

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 371 cagctgctggacgtcgacgccggcg 395
           ||||||||||||| |||||||||||
Sbjct: 426 cagctgctggacggcgacgccggcg 450
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>emb|CR681180.2|CNS0FOJS Tetraodon nigroviridis full-length cDNA
          Length = 911

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 371 cagctgctggacgtcgacgccggcg 395
           ||||||||||||| |||||||||||
Sbjct: 423 cagctgctggacggcgacgccggcg 447
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>emb|CR670864.2|CNS0FGLY Tetraodon nigroviridis full-length cDNA
          Length = 1126

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 371 cagctgctggacgtcgacgccggcg 395
           ||||||||||||| |||||||||||
Sbjct: 594 cagctgctggacggcgacgccggcg 618
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>ref|XM_844186.1| PREDICTED: Canis familiaris similar to Growth-arrest-specific
           protein 1 precursor (GAS-1) (LOC607496), mRNA
          Length = 1032

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 367 cgagcagctgctggacgtcgacgccggcg 395
           ||||||||||||||||| ||||| |||||
Sbjct: 858 cgagcagctgctggacgacgacgacggcg 886
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>emb|CR657338.2|CNS0F668 Tetraodon nigroviridis full-length cDNA
          Length = 1182

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 371 cagctgctggacgtcgacgccggcg 395
           ||||||||||||| |||||||||||
Sbjct: 603 cagctgctggacggcgacgccggcg 627
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>emb|AL109837.22|HS1128N12 Human DNA sequence from clone RP5-1128N12 on chromosome 20 Contains the
             PGAM3P gene for phosphoglycerate mutase 3 pseudogene and a
             CpG island, complete sequence
          Length = 139214

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    gcaaacatccaaaacaagtag 77
             |||||||||||||||||||||
Sbjct: 32761 gcaaacatccaaaacaagtag 32781
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>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence,
           complete sequence
          Length = 134496

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 376 gctggacgtcgacgccggcgt 396
           |||||||||||||||||||||
Sbjct: 822 gctggacgtcgacgccggcgt 842
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>gb|AC175659.3| Mus musculus chromosome 5, clone wi1-764I16, complete sequence
          Length = 37103

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 67    aaaacaagtaggcaaaattgtactt 91
             |||||||| ||||||||||||||||
Sbjct: 18465 aaaacaagcaggcaaaattgtactt 18441
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>gb|AC158757.6| Mus musculus chromosome 5, clone RP23-64D3, complete sequence
          Length = 247058

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 67     aaaacaagtaggcaaaattgtactt 91
              |||||||| ||||||||||||||||
Sbjct: 246482 aaaacaagcaggcaaaattgtactt 246506
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>gb|AC157802.8| Mus musculus chromosome 1, clone RP24-297D18, complete sequence
          Length = 154309

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 44    ttttacaagagcagcaaacat 64
             |||||||||||||||||||||
Sbjct: 99871 ttttacaagagcagcaaacat 99891
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 376      gctggacgtcgacgccggcgt 396
                |||||||||||||||||||||
Sbjct: 31766112 gctggacgtcgacgccggcgt 31766132
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 421      aggagatgagcgagagcgtga 441
                |||||||||||||||||||||
Sbjct: 31722349 aggagatgagcgagagcgtga 31722369
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>gb|AC026179.5|AC026179 Homo sapiens chromosome 3 clone RP11-264H3 map 3p, complete sequence
          Length = 166488

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 68     aaacaagtaggcaaaattgtactta 92
              |||||||||||||||||| ||||||
Sbjct: 135166 aaacaagtaggcaaaattatactta 135190
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>gb|AC066584.6|AC066584 Homo sapiens chromosome 3 clone RP11-244G3 map 3p, complete sequence
          Length = 155825

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 68    aaacaagtaggcaaaattgtactta 92
             |||||||||||||||||| ||||||
Sbjct: 59312 aaacaagtaggcaaaattatactta 59336
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>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0503C12
          Length = 147180

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 421    aggagatgagcgagagcgtga 441
              |||||||||||||||||||||
Sbjct: 136081 aggagatgagcgagagcgtga 136101
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>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:OJ1414_E05
          Length = 105222

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 421 aggagatgagcgagagcgtga 441
           |||||||||||||||||||||
Sbjct: 387 aggagatgagcgagagcgtga 407
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                            
Query: 247     ccggcgtcagcgccacagtcggcgggaac 275
               ||||||||||||||| |||||||||||||
Sbjct: 3806430 ccggcgtcagcgcca-agtcggcgggaac 3806403
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>gb|AC120370.9| Mus musculus chromosome 1, clone RP24-441N3, complete sequence
          Length = 163929

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 44     ttttacaagagcagcaaacat 64
              |||||||||||||||||||||
Sbjct: 101703 ttttacaagagcagcaaacat 101683
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>gb|AC023485.6| Homo sapiens chromosome 3 clone RP11-489D19 map 3p, complete sequence
          Length = 179304

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 68    aaacaagtaggcaaaattgtactta 92
             |||||||||||||||||| ||||||
Sbjct: 82785 aaacaagtaggcaaaattatactta 82809
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>ref|XM_323049.1| Neurospora crassa OR74A hypothetical protein (NCU03748.1) partial
            mRNA
          Length = 1575

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 567  aggccgacctcgaggccgcc 586
            ||||||||||||||||||||
Sbjct: 1109 aggccgacctcgaggccgcc 1128
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>ref|XM_956002.1| Neurospora crassa OR74A hypothetical protein (NCU03748.1) partial
            mRNA
          Length = 1575

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 567  aggccgacctcgaggccgcc 586
            ||||||||||||||||||||
Sbjct: 1109 aggccgacctcgaggccgcc 1128
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>ref|XM_001004260.1| PREDICTED: Mus musculus similar to gonadotropin inducible ovarian
            transcription factor 1, transcript variant 2 (LOC667959),
            mRNA
          Length = 1546

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  tgcctatactttactgctgc 191
            ||||||||||||||||||||
Sbjct: 1154 tgcctatactttactgctgc 1135
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>ref|XM_001004254.1| PREDICTED: Mus musculus similar to gonadotropin inducible ovarian
            transcription factor 1, transcript variant 1 (LOC667959),
            mRNA
          Length = 1514

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  tgcctatactttactgctgc 191
            ||||||||||||||||||||
Sbjct: 1122 tgcctatactttactgctgc 1103
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>ref|XM_974499.1| PREDICTED: Mus musculus similar to gonadotropin inducible ovarian
            transcription factor 1, transcript variant 2 (LOC664985),
            mRNA
          Length = 1546

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  tgcctatactttactgctgc 191
            ||||||||||||||||||||
Sbjct: 1154 tgcctatactttactgctgc 1135
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>ref|XM_974465.1| PREDICTED: Mus musculus similar to gonadotropin inducible ovarian
            transcription factor 1, transcript variant 1 (LOC664985),
            mRNA
          Length = 1514

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  tgcctatactttactgctgc 191
            ||||||||||||||||||||
Sbjct: 1122 tgcctatactttactgctgc 1103
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>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12
          Length = 340900

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 567    aggccgacctcgaggccgcc 586
              ||||||||||||||||||||
Sbjct: 292250 aggccgacctcgaggccgcc 292269
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>gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete sequence
          Length = 120384

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    actatggtttcgtcctgttt 46
             ||||||||||||||||||||
Sbjct: 89590 actatggtttcgtcctgttt 89609
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>gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete sequence
          Length = 130592

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    actatggtttcgtcctgttt 46
             ||||||||||||||||||||
Sbjct: 39043 actatggtttcgtcctgttt 39062
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 367   cgagcagctgctggacgtcgacgccggc 394
             |||||||||||||| ||||| |||||||
Sbjct: 39321 cgagcagctgctggccgtcggcgccggc 39294
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>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14
          Length = 346301

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 367    cgagcagctgctggacgtcgacgccggc 394
              |||||||||||||| ||||| |||||||
Sbjct: 112700 cgagcagctgctggccgtcggcgccggc 112673
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 367    cgagcagctgctggacgtcgacgccggc 394
              |||||||||||||| ||||| |||||||
Sbjct: 257848 cgagcagctgctggccgtcggcgccggc 257875
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>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  gaggccgacctcgaggccgc 585
            ||||||||||||||||||||
Sbjct: 4354 gaggccgacctcgaggccgc 4373
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>emb|AL513443.1|NC93G11 Neurospora crassa DNA linkage group V Cosmid contig 93G11
          Length = 86075

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 567   aggccgacctcgaggccgcc 586
             ||||||||||||||||||||
Sbjct: 71880 aggccgacctcgaggccgcc 71861
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>dbj|AK141151.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230074A15
            product:unclassifiable, full insert sequence
          Length = 3772

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  tgcctatactttactgctgc 191
            ||||||||||||||||||||
Sbjct: 1072 tgcctatactttactgctgc 1053
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>emb|CR318639.6| Mouse DNA sequence from clone RP23-317N11 on chromosome 2, complete
              sequence
          Length = 193326

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    tgcctatactttactgctgc 191
              ||||||||||||||||||||
Sbjct: 148680 tgcctatactttactgctgc 148661



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tgcctatactttactgctgc 191
             ||||||||||||||||||||
Sbjct: 48688 tgcctatactttactgctgc 48669
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>emb|CR354442.5| Mouse DNA sequence from clone RP24-562O19 on chromosome 2, complete
             sequence
          Length = 145110

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tgcctatactttactgctgc 191
             ||||||||||||||||||||
Sbjct: 84828 tgcctatactttactgctgc 84809
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>gb|AE004766.1| Pseudomonas aeruginosa PAO1, section 327 of 529 of the complete
            genome
          Length = 14138

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 567  aggccgacctcgaggccgcc 586
            ||||||||||||||||||||
Sbjct: 2084 aggccgacctcgaggccgcc 2065
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>gb|AF019931.1|AF019931 Desulfuromonas sp. FD-1 16S ribosomal RNA gene, partial sequence
          Length = 1179

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 321  gtccccaccttgcctccggt 340
            ||||||||||||||||||||
Sbjct: 1006 gtccccaccttgcctccggt 987
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>emb|BX842661.2| Mouse DNA sequence from clone RP24-137B4 on chromosome 2, complete
            sequence
          Length = 3268

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  tgcctatactttactgctgc 191
            ||||||||||||||||||||
Sbjct: 2863 tgcctatactttactgctgc 2844
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>emb|BX682537.3| Mouse DNA sequence from clone RP23-376N23 on chromosome 2, complete
              sequence
          Length = 186050

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    tgcctatactttactgctgc 191
              ||||||||||||||||||||
Sbjct: 176920 tgcctatactttactgctgc 176939



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    tgcctatactttactgctgc 191
              ||||||||||||||||||||
Sbjct: 102034 tgcctatactttactgctgc 102015
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>emb|BX511235.10| Mouse DNA sequence from clone RP23-232H13 on chromosome 2, complete
             sequence
          Length = 169581

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tgcctatactttactgctgc 191
             ||||||||||||||||||||
Sbjct: 16842 tgcctatactttactgctgc 16823
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>emb|BX284639.15| Mouse DNA sequence from clone RP24-87L14 on chromosome 2, complete
              sequence
          Length = 115602

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    tgcctatactttactgctgc 191
              ||||||||||||||||||||
Sbjct: 113418 tgcctatactttactgctgc 113399
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>emb|AL845476.15| Mouse DNA sequence from clone RP23-355G16 on chromosome 2, complete
              sequence
          Length = 218484

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    tgcctatactttactgctgc 191
              ||||||||||||||||||||
Sbjct: 143122 tgcctatactttactgctgc 143141



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tgcctatactttactgctgc 191
             ||||||||||||||||||||
Sbjct: 13292 tgcctatactttactgctgc 13311
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>emb|BX005149.16| Mouse DNA sequence from clone RP24-574J13 on chromosome 2, complete
             sequence
          Length = 179228

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tgcctatactttactgctgc 191
             ||||||||||||||||||||
Sbjct: 74288 tgcctatactttactgctgc 74269
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>emb|CT010482.9| Mouse DNA sequence from clone RP23-282O12 on chromosome 2, complete
              sequence
          Length = 188883

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    tgcctatactttactgctgc 191
              ||||||||||||||||||||
Sbjct: 113773 tgcctatactttactgctgc 113792



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tgcctatactttactgctgc 191
             ||||||||||||||||||||
Sbjct: 16139 tgcctatactttactgctgc 16158
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>emb|CR955031.3| Mouse DNA sequence from clone RP24-395K22 on chromosome 2, complete
              sequence
          Length = 178000

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    tgcctatactttactgctgc 191
              ||||||||||||||||||||
Sbjct: 100889 tgcctatactttactgctgc 100908
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>emb|BX294394.4| Mouse DNA sequence from clone RP24-63F2 on chromosome 2, complete
            sequence
          Length = 138334

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  tgcctatactttactgctgc 191
            ||||||||||||||||||||
Sbjct: 2863 tgcctatactttactgctgc 2844
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>emb|BX000464.8| Mouse DNA sequence from clone RP23-166A1 on chromosome 2, complete
             sequence
          Length = 85939

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tgcctatactttactgctgc 191
             ||||||||||||||||||||
Sbjct: 72172 tgcctatactttactgctgc 72153
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>emb|CR848808.14| Mouse DNA sequence from clone RP23-442I10 on chromosome 2, complete
              sequence
          Length = 128936

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    tgcctatactttactgctgc 191
              ||||||||||||||||||||
Sbjct: 114136 tgcctatactttactgctgc 114117



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tgcctatactttactgctgc 191
             ||||||||||||||||||||
Sbjct: 16555 tgcctatactttactgctgc 16536


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,899,911
Number of Sequences: 3902068
Number of extensions: 3899911
Number of successful extensions: 79904
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79513
Number of HSP's gapped (non-prelim): 405
length of query: 594
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 571
effective length of database: 17,143,297,704
effective search space: 9788822988984
effective search space used: 9788822988984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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