ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38i21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATCX_SCHPO (Q09891) Putative phospholipid-transporting ATPase 1 ... 30 5.3
2NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-) 29 9.0
3LPXC_CHLAB (Q5L725) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosa... 29 9.0

>ATCX_SCHPO (Q09891) Putative phospholipid-transporting ATPase 1 (EC 3.6.3.1)|
          Length = 1402

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 38  PRSKLQLSKPTPLEFTMDN-FTNYIHIPRIITLNQLCNEGLTVRRSQANPG 187
           PR+K++ +K TP++F   N F  + ++  +  L  +  + +++   Q NPG
Sbjct: 86  PRNKIRTAKYTPIDFIPKNIFLQFQNVANLFFLFLVILQSISIFGEQVNPG 136



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>NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)|
          Length = 2616

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 8   TKKSCSSKQGPRSKLQLSKPTPLEFTMDNFTNYIH---IPRIITLNQLCNEGLT 160
           T+++ S+ + PRS   L  PT +E  +++F  +     I R++  N+  +E +T
Sbjct: 553 TREAISNPESPRSSHPLDNPTSIENMLESFEQHEEQKPILRVLNANESSSETVT 606



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>LPXC_CHLAB (Q5L725) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine|
           deacetylase (EC 3.5.1.-) (UDP-3-O-acyl-GlcNAc
           deacetylase)
          Length = 280

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 51  CNCQNQLPLSSPWTILLTISTFLVLLRSTNYATRDLR*GGVRPILDGDGPFHIFLQ 218
           CN      LSS  +I+ T+   +  LRS+N     +R      I  GDG  H+F+Q
Sbjct: 59  CNTGRSTTLSSGDSIIATVEHLMAALRSSNIDNVIVR-CDEEEIPIGDGSSHVFMQ 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,707,370
Number of Sequences: 219361
Number of extensions: 1496772
Number of successful extensions: 3311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3311
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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