ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38i18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109091.1| Zea mays PCO149758 mRNA sequence Length = 1014 Score = 174 bits (88), Expect = 3e-40 Identities = 184/216 (85%) Strand = Plus / Minus Query: 511 atcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaaatgcgtcagcag 570 |||||||| ||||||||| |||||| |||| ||||||||| | || ||||| ||||||| Sbjct: 752 atcaagaaagcccaaatttggacaaggctgactgaaacaaactcgagaatgcctcagcag 693 Query: 571 tagtcccatcctcgaccttaattttgagctgggccttcgctgatgctgtgttcacaatgc 630 ||| ||||| || |||| ||||||||||| |||||||||||||||||||| ||||| | Sbjct: 692 cagttccatcatcagccttgattttgagctgtgccttcgctgatgctgtgttgacaatac 633 Query: 631 attctacaaggtagacggcagcagccccagctttctgaccataaaagtagaacttgtaat 690 |||| |||||| ||| |||||||||||| |||| ||| |||| || |||||||||| | Sbjct: 632 attcaacaaggaagaaagcagcagccccatctttttgagcatagaaaaagaacttgtagt 573 Query: 691 ttggaggctgaccgcctgaagcaatgcattgaatgt 726 | ||||||||||||||||||||||| ||||| |||| Sbjct: 572 tcggaggctgaccgcctgaagcaatacattggatgt 537
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 129 bits (65), Expect = 1e-26 Identities = 191/233 (81%) Strand = Plus / Minus Query: 499 aaaatgctcacaatcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaa 558 |||||||||| |||||||| ||||||||| |||||| |||| |||||||| || |||| Sbjct: 24998979 aaaatgctcaggatcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaa 24998920 Query: 559 atgcgtcagcagtagtcccatcctcgaccttaattttgagctgggccttcgctgatgctg 618 |||| || |||| |||||||| || |||| | ||||| ||| |||||||||||||||| Sbjct: 24998919 atgcctctgcagcggtcccatcatcagccttcactttgatctgtgccttcgctgatgctg 24998860 Query: 619 tgttcacaatgcattctacaaggtagacggcagcagccccagctttctgaccataaaagt 678 |||| || || |||||||||||| ||| || | ||| ||| | || ||| |||| || Sbjct: 24998859 tgttgacgatacattctacaaggaagaaagcggtagcaccatccttttgagcatagaaaa 24998800 Query: 679 agaacttgtaatttggaggctgaccgcctgaagcaatgcattgaatgtagttg 731 |||||||||| ||||| ||||| || ||||||||||| || |||||||||||| Sbjct: 24998799 agaacttgtagtttgggggctggccacctgaagcaatacactgaatgtagttg 24998747
>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0006C01 Length = 153865 Score = 129 bits (65), Expect = 1e-26 Identities = 191/233 (81%) Strand = Plus / Minus Query: 499 aaaatgctcacaatcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaa 558 |||||||||| |||||||| ||||||||| |||||| |||| |||||||| || |||| Sbjct: 71502 aaaatgctcaggatcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaa 71443 Query: 559 atgcgtcagcagtagtcccatcctcgaccttaattttgagctgggccttcgctgatgctg 618 |||| || |||| |||||||| || |||| | ||||| ||| |||||||||||||||| Sbjct: 71442 atgcctctgcagcggtcccatcatcagccttcactttgatctgtgccttcgctgatgctg 71383 Query: 619 tgttcacaatgcattctacaaggtagacggcagcagccccagctttctgaccataaaagt 678 |||| || || |||||||||||| ||| || | ||| ||| | || ||| |||| || Sbjct: 71382 tgttgacgatacattctacaaggaagaaagcggtagcaccatccttttgagcatagaaaa 71323 Query: 679 agaacttgtaatttggaggctgaccgcctgaagcaatgcattgaatgtagttg 731 |||||||||| ||||| ||||| || ||||||||||| || |||||||||||| Sbjct: 71322 agaacttgtagtttgggggctggccacctgaagcaatacactgaatgtagttg 71270
>ref|NM_192888.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2541 Score = 119 bits (60), Expect = 1e-23 Identities = 180/220 (81%) Strand = Plus / Minus Query: 512 tcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaaatgcgtcagcagt 571 ||||||| ||||||||| |||||| |||| |||||||| || |||||||| || |||| Sbjct: 2541 tcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaaatgcctctgcagc 2482 Query: 572 agtcccatcctcgaccttaattttgagctgggccttcgctgatgctgtgttcacaatgca 631 |||||||| || |||| | ||||| ||| |||||||||||||||||||| || || || Sbjct: 2481 ggtcccatcatcagccttcactttgatctgtgccttcgctgatgctgtgttgacgataca 2422 Query: 632 ttctacaaggtagacggcagcagccccagctttctgaccataaaagtagaacttgtaatt 691 |||||||||| ||| || | ||| ||| | || ||| |||| || |||||||||| || Sbjct: 2421 ttctacaaggaagaaagcggtagcaccatccttttgagcatagaaaaagaacttgtagtt 2362 Query: 692 tggaggctgaccgcctgaagcaatgcattgaatgtagttg 731 ||| ||||| || ||||||||||| || |||||||||||| Sbjct: 2361 tgggggctggccacctgaagcaatacactgaatgtagttg 2322
>dbj|AK061897.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G12, full insert sequence Length = 599 Score = 101 bits (51), Expect = 3e-18 Identities = 120/143 (83%) Strand = Plus / Minus Query: 499 aaaatgctcacaatcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaa 558 |||||||||| |||||||| ||||||||| |||||| |||| |||||||| || |||| Sbjct: 176 aaaatgctcaggatcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaa 117 Query: 559 atgcgtcagcagtagtcccatcctcgaccttaattttgagctgggccttcgctgatgctg 618 |||| || |||| |||||||| || |||| | ||||| ||| |||||||||||||||| Sbjct: 116 atgcctctgcagcggtcccatcatcagccttcactttgatctgtgccttcgctgatgctg 57 Query: 619 tgttcacaatgcattctacaagg 641 |||| || || |||||||||||| Sbjct: 56 tgttgacgatacattctacaagg 34
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 tttcacctgctccaagcttct 392 ||||||||||||||||||||| Sbjct: 130210 tttcacctgctccaagcttct 130190
>gb|AC138006.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0066O12, complete sequence Length = 22258 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 372 tttcacctgctccaagcttct 392 ||||||||||||||||||||| Sbjct: 21608 tttcacctgctccaagcttct 21628
>gb|AC160248.6| Pan troglodytes BAC clone CH251-541A22 from chromosome unknown, complete sequence Length = 182426 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 taactttgaattccaacttat 61 ||||||||||||||||||||| Sbjct: 1460 taactttgaattccaacttat 1480
>emb|AL354674.5| Human DNA sequence from clone RP11-629E24 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 137347 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 taactttgaattccaacttat 61 ||||||||||||||||||||| Sbjct: 109551 taactttgaattccaacttat 109571
>gb|AY050309.1| Mus musculus podocin (Nphs2) mRNA, complete cds Length = 1530 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 651 gcagccccagctttctgacca 671 ||||||||||||||||||||| Sbjct: 31 gcagccccagctttctgacca 11
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 tttcacctgctccaagcttct 392 ||||||||||||||||||||| Sbjct: 4478847 tttcacctgctccaagcttct 4478827
>gb|AC159029.1| Pan troglodytes BAC clone CH251-407C14 from chromosome unknown, complete sequence Length = 175795 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 taactttgaattccaacttat 61 ||||||||||||||||||||| Sbjct: 125523 taactttgaattccaacttat 125543
>gb|AF494366.1| Helicobacter bilis antigen P17Hb64 gene, complete cds Length = 444 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 gttcttaagaagttgatgttt 41 ||||||||||||||||||||| Sbjct: 7 gttcttaagaagttgatgttt 27
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 tttcacctgctccaagcttct 392 ||||||||||||||||||||| Sbjct: 4487541 tttcacctgctccaagcttct 4487521 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,762,561 Number of Sequences: 3902068 Number of extensions: 6762561 Number of successful extensions: 127737 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127586 Number of HSP's gapped (non-prelim): 148 length of query: 732 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 709 effective length of database: 17,143,297,704 effective search space: 12154598072136 effective search space used: 12154598072136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
