ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COL12_ARATH (Q9LJ44) Putative zinc finger protein CONSTANS-LIKE 12 30 5.3
2Y480_MYCTU (Q11146) Hypothetical UPF0012 protein Rv0480c/MT0498 ... 30 6.9
3VPE_SOYBN (P49045) Vacuolar processing enzyme precursor (EC 3.4.... 29 9.0
4VATA_NANEQ (Q74MJ7) V-type ATP synthase alpha chain (EC 3.6.3.14... 29 9.0
5ZP2_RABIT (P48829) Zona pellucida sperm-binding protein 2 precur... 29 9.0

>COL12_ARATH (Q9LJ44) Putative zinc finger protein CONSTANS-LIKE 12|
          Length = 337

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +3

Query: 159 GCPAEESHNLPWSSHRCLSLQPPKHGNLMDPE*LGQFLVNDILNT 293
           GCP+    N  WSS     L+PP  G L+ P  +G F +ND+ NT
Sbjct: 93  GCPSPTDFNRMWSS----ILEPPVSG-LLSPF-VGSFPLNDLNNT 131



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>Y480_MYCTU (Q11146) Hypothetical UPF0012 protein Rv0480c/MT0498 (EC 3.5.-.-)|
          Length = 340

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -2

Query: 570 ARTHRGSSSISPRGIARSLVLSRPCEGLFSSGNMSKNIIAKLFPD 436
           ART  G+SS +P G+  SLV S   E + S+G   + ++A +  D
Sbjct: 268 ARTGVGASSAAPTGVGGSLVASPLGEVVVSAGTQPQLLVADIDVD 312



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>VPE_SOYBN (P49045) Vacuolar processing enzyme precursor (EC 3.4.22.-) (VPE)|
          Length = 495

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 391 ASCSYKEFAIYVASTEAAAVLEGL 320
           AS SYKE  IYV + E+ +V EG+
Sbjct: 206 ASGSYKEMVIYVEACESGSVFEGI 229



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>VATA_NANEQ (Q74MJ7) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type|
           ATPase subunit A)
          Length = 570

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 596 LRKIPSELGRVHIED-HPAYLLEALQEALSLVGPVKGYSALE 474
           LR+I S LG +  E+ +PAYLL  L E     G V+  + LE
Sbjct: 329 LREISSRLGEIPSEEGYPAYLLRKLAEFYERSGRVRTLNDLE 370



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>ZP2_RABIT (P48829) Zona pellucida sperm-binding protein 2 precursor (Zona|
           pellucida glycoprotein ZP2) (Zona pellucida protein A)
           (75 kDa zona pellucida protein) (Fragment)
          Length = 666

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 379 YKEFAIYVASTEAAAVLEGLRVGARDLKPVFR 284
           + +F +Y   T+ A  L+ LRVG+   +PVF+
Sbjct: 325 FMDFEVYTHQTKPALNLDTLRVGSSSCQPVFK 356


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,061,158
Number of Sequences: 219361
Number of extensions: 1678139
Number of successful extensions: 3751
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3750
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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