>SDHL_STRCO (O86564) L-serine dehydratase (EC 4.3.1.17) (L-serine deaminase)|
           (SDH) (L-SD)
          Length = 455

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 317 GISMHSESRGSCRIVTDDNMLRYKVGTVDGTIVFSKQPGLSVDQLL 180
           G  +  ++ G+ RIV DD +L+Y   T D  +  +++ GLS+  L+
Sbjct: 151 GFVVDEDAVGADRIVLDDTVLKYPFRTGDELLRLARETGLSISALM 196

>DPO3A_UREPA (Q9PQ74) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 969

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 383 GEDPTCSRSVSGNSVQDHIHYLGISMHSESRGSCRIVTDDNMLRYKV 243
           G D     SV+   + D I YLGI ++S +  + +   D N L+Y +
Sbjct: 838 GLDYAKDMSVNDRYLDDEIQYLGIDLNSLNYANYKTEIDYNKLKYTI 884

>YQB1_CAEEL (Q09255) Hypothetical protein C30G12.1|
          Length = 469

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +1

Query: 133 TIKTNPCNLELVYCTLSS*STDKPGCFEKTIVPSTVPTLYLSILSSVTILHDP 291
           T  T P  + L     S+ +T +P  F+KT  P+T+P+   S LSS+  + DP
Sbjct: 310 TTTTTPRQISLQTIPFST-TTRQPN-FDKTKTPATMPSASSSSLSSIQTVVDP 360

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = +1

Query: 229 PSTVPTLYLSILSSVTILHDPRDSECMLMPR*WIWSCTLFPLTDLLQVGSSPESSQICSI 408
           P  VP   L   SS   +H    S  +  P+ W  + T      L   G S  +    ++
Sbjct: 175 PGGVPQA-LGDRSSTQNIHQNHQSARVAPPQSWYEAATAATTAQLKSSGGSGNAGASAAV 233

Query: 409 GYTRLSSPI 435
           G+T  SSPI
Sbjct: 234 GFTMSSSPI 242

>SYL_STRCO (Q9RDL5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 966

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -3

Query: 443 VHNIGLDSLVYPIEQICDDSGEDPTCSRSVSGNSVQDHIHYLGISMHSESRGSCRI 276
           +H +G D+   P EQ    +G  P  S   +  ++Q  +  LG+  H   R    I
Sbjct: 104 LHTLGFDAFGLPAEQYAVQTGTHPRVSTEANMKNMQSQLRRLGLG-HDRRRSFATI 158

>FIXB_SHIFL (P59675) Protein fixB|
          Length = 313

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 434 IGLDSLVYPIEQICDDSGEDPTCSRSVSGNSV-QDHIHYLGIS 309
           IG    +   EQ+C   G +  CSR V+ N    +H  Y+GIS
Sbjct: 205 IGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGIS 247

>FIXB_ECOLI (P31574) Protein fixB|
          Length = 313

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 434 IGLDSLVYPIEQICDDSGEDPTCSRSVSGNSV-QDHIHYLGIS 309
           IG    +   EQ+C   G +  CSR V+ N    +H  Y+GIS
Sbjct: 205 IGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGIS 247

>FIXB_ECOL6 (P59674) Protein fixB|
          Length = 313

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 434 IGLDSLVYPIEQICDDSGEDPTCSRSVSGNSV-QDHIHYLGIS 309
           IG    +   EQ+C   G +  CSR V+ N    +H  Y+GIS
Sbjct: 205 IGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGIS 247

>FIXB_ECO57 (Q8XA27) Protein fixB|
          Length = 313

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 434 IGLDSLVYPIEQICDDSGEDPTCSRSVSGNSV-QDHIHYLGIS 309
           IG    +   EQ+C   G +  CSR V+ N    +H  Y+GIS
Sbjct: 205 IGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGIS 247


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,497,606
Number of Sequences: 219361
Number of extensions: 1484837
Number of successful extensions: 3023
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3021
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)