| Clone Name | rbags38i03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009527.1| Triticum aestivum clone wr1.pk0115.f5:fis, full insert mRNA sequence Length = 774 Score = 486 bits (245), Expect = e-134 Identities = 425/481 (88%), Gaps = 3/481 (0%) Strand = Plus / Minus Query: 5 atatgtatgtacatttcagaaatacaccctcagctaggataatttaacctagcaaggatc 64 |||||| |||||||||||||||||||||||||||||||||||||||| | ||| |||||| Sbjct: 719 atatgtttgtacatttcagaaatacaccctcagctaggataatttaatccagccaggatc 660 Query: 65 acacgtgtatatatacatgagatagtcctttgattgccaacaagcatattgtgctttggc 124 ||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| Sbjct: 659 acacgcgtatatatacatgagatagtgctttgattgccaacaagaatattgttctttggc 600 Query: 125 agaaaagaaccatcaaaacaaatccatgcaatcttgagcttgtttactgtacactgagta 184 | |||| ||| ||||||| ||||||||| ||||||||||||||||||||| |||||||| Sbjct: 599 aaaaaaaaac-atcaaaataaatccatgtaatcttgagcttgtttactgtgtactgagta 541 Query: 185 gctgatcaactgataaaccaggctgcttcgagaagacaatagtgccatctacagtgccaa 244 ||||| ||||||||||||||||||||||||||||||||||| || ||||||| | ||| Sbjct: 540 gctgaccaactgataaaccaggctgcttcgagaagacaataacaccgtctacaggggcaa 481 Query: 245 ctttgtacctgagcatattgtcatccgtgacaattctgcatgatccccgcgactcagaat 304 |||||| |||||||||||||||||||||||| |||||| ||||||| |||||||| | || Sbjct: 480 ctttgtgcctgagcatattgtcatccgtgacgattctggatgatccgcgcgactcgggat 421 Query: 305 gcatgctgatgccaagatagtggatatggtcttgcacgctatttccacttacggacctgc 364 | |||||| ||||||| || || ||||| | || |||||||||||| | || ||||| Sbjct: 420 ggatgctggagccaagaaagggggtatgggcctggacgctatttccaaccaagggcctgc 361 Query: 365 tgcaagtgggatc-ttcaccagaatcgtcacagatttgctcgatcgggtatactaggcta 423 |||||||||| || ||| ||||||| |||||||| |||||||||||||||| ||||||| Sbjct: 360 tgcaagtggggtctttctccagaatgatcacagatgtgctcgatcgggtatagtaggcta 301 Query: 424 tcaagtccaatattatgaaccccatacctctcgtggaaaatgatggtaggttttctgtgg 483 || |||||||| ||||||| |||| |||||| |||| |||||||||||||| |||||||| Sbjct: 300 tcgagtccaatgttatgaa-cccaaacctctggtgggaaatgatggtaggtattctgtgg 242 Query: 484 g 484 | Sbjct: 241 g 241
>ref|XM_475145.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1029 Score = 176 bits (89), Expect = 4e-41 Identities = 192/225 (85%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 260 tattgtcatccgtgacaattctgcatgatccccgcgactcagaatgcatgctgatgccaa 319 |||||||| | |||||||||||||| |||||| | ||| | ||||||||||||||||| Sbjct: 940 tattgtcacctgtgacaattctgcaagatcccgatgcctcggcatgcatgctgatgccaa 881 Query: 320 gatagtggatatggtcttgcacgctatttccacttacggacctgctgcaagtgggatctt 379 | |||| |||||||||||||| || |||||||| || |||||||||||||| || |||| Sbjct: 880 ggtagtttatatggtcttgcacactgtttccactcacagacctgctgcaagttgggtctt 821 Query: 380 caccagaatcgtcacagatttgctcgatcgggtatactaggctatcaagtccaatattat 439 | ||||| || ||||| |||||||| || | || |||||||| ||||||||| ||||| Sbjct: 820 ctccagagtcatcacaaatttgctctattgaatagactaggcttccaagtccaacattat 761 Query: 440 gaaccccatacctctcgtggaaaatgatggtaggttttctgtggg 484 ||| |||||||||||||||| |||||||| ||||||||||||||| Sbjct: 760 gaa-cccatacctctcgtgggaaatgatgataggttttctgtggg 717 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 186 ctgatcaactgataaaccaggctgcttcgagaagacaatagtgccatc 233 ||||||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 1011 ctgatcaactgataaaccaggttgcttcgagaaaacaatgttgccatc 964
>dbj|AK068781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159D11, full insert sequence Length = 1778 Score = 176 bits (89), Expect = 4e-41 Identities = 192/225 (85%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 260 tattgtcatccgtgacaattctgcatgatccccgcgactcagaatgcatgctgatgccaa 319 |||||||| | |||||||||||||| |||||| | ||| | ||||||||||||||||| Sbjct: 1463 tattgtcacctgtgacaattctgcaagatcccgatgcctcggcatgcatgctgatgccaa 1404 Query: 320 gatagtggatatggtcttgcacgctatttccacttacggacctgctgcaagtgggatctt 379 | |||| |||||||||||||| || |||||||| || |||||||||||||| || |||| Sbjct: 1403 ggtagtttatatggtcttgcacactgtttccactcacagacctgctgcaagttgggtctt 1344 Query: 380 caccagaatcgtcacagatttgctcgatcgggtatactaggctatcaagtccaatattat 439 | ||||| || ||||| |||||||| || | || |||||||| ||||||||| ||||| Sbjct: 1343 ctccagagtcatcacaaatttgctctattgaatagactaggcttccaagtccaacattat 1284 Query: 440 gaaccccatacctctcgtggaaaatgatggtaggttttctgtggg 484 ||| |||||||||||||||| |||||||| ||||||||||||||| Sbjct: 1283 gaa-cccatacctctcgtgggaaatgatgataggttttctgtggg 1240 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 186 ctgatcaactgataaaccaggctgcttcgagaagacaatagtgccatc 233 ||||||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 1534 ctgatcaactgataaaccaggttgcttcgagaaaacaatgttgccatc 1487
>ref|NM_190064.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 816 Score = 105 bits (53), Expect = 1e-19 Identities = 150/181 (82%), Gaps = 1/181 (0%) Strand = Plus / Minus Query: 304 tgcatgctgatgccaagatagtggatatggtcttgcacgctatttccacttacggacctg 363 |||||||||| ||| ||||||| || |||||||||||||| | ||||| || |||||| Sbjct: 683 tgcatgctgacgccgagatagtatatgtggtcttgcacgctgctcccactcacagacctg 624 Query: 364 ctgcaagtgggatcttcaccagaatcgtcacagatttgctcgatcgggtatactaggcta 423 | ||| | || |||||||||||||| |||||||| ||||| | || ||| |||||||| Sbjct: 623 cagcacgatgggtcttcaccagaatcatcacagatctgctctaccgagtacactaggctt 564 Query: 424 tcaagtccaatattatgaaccccatacctctcgtggaaaatgatggtaggttttctgtgg 483 | ||||| | ||||||| |||||||||||| ||| |||||||||||||| |||||||| Sbjct: 563 cctagtccgacgttatgaa-cccatacctctcttgggaaatgatggtaggtcttctgtgg 505 Query: 484 g 484 | Sbjct: 504 g 504
>dbj|AK101890.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070N06, full insert sequence Length = 2752 Score = 105 bits (53), Expect = 1e-19 Identities = 150/181 (82%), Gaps = 1/181 (0%) Strand = Plus / Minus Query: 304 tgcatgctgatgccaagatagtggatatggtcttgcacgctatttccacttacggacctg 363 |||||||||| ||| ||||||| || |||||||||||||| | ||||| || |||||| Sbjct: 2432 tgcatgctgacgccgagatagtatatgtggtcttgcacgctgctcccactcacagacctg 2373 Query: 364 ctgcaagtgggatcttcaccagaatcgtcacagatttgctcgatcgggtatactaggcta 423 | ||| | || |||||||||||||| |||||||| ||||| | || ||| |||||||| Sbjct: 2372 cagcacgatgggtcttcaccagaatcatcacagatctgctctaccgagtacactaggctt 2313 Query: 424 tcaagtccaatattatgaaccccatacctctcgtggaaaatgatggtaggttttctgtgg 483 | ||||| | ||||||| |||||||||||| ||| |||||||||||||| |||||||| Sbjct: 2312 cctagtccgacgttatgaa-cccatacctctcttgggaaatgatggtaggtcttctgtgg 2254 Query: 484 g 484 | Sbjct: 2253 g 2253
>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09, complete sequence Length = 167318 Score = 79.8 bits (40), Expect = 8e-12 Identities = 88/104 (84%) Strand = Plus / Plus Query: 260 tattgtcatccgtgacaattctgcatgatccccgcgactcagaatgcatgctgatgccaa 319 |||||||| | |||||||||||||| |||||| | ||| | ||||||||||||||||| Sbjct: 58088 tattgtcacctgtgacaattctgcaagatcccgatgcctcggcatgcatgctgatgccaa 58147 Query: 320 gatagtggatatggtcttgcacgctatttccacttacggacctg 363 | |||| |||||||||||||| || |||||||| || |||||| Sbjct: 58148 ggtagtttatatggtcttgcacactgtttccactcacagacctg 58191 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 186 ctgatcaactgataaaccaggctgcttcgagaagacaatagtgccatc 233 ||||||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 58017 ctgatcaactgataaaccaggttgcttcgagaaaacaatgttgccatc 58064 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 446 catacctctcgtggaaaatgatggtaggttttctgtggg 484 |||||||||||||| |||||||| ||||||||||||||| Sbjct: 58467 catacctctcgtgggaaatgatgataggttttctgtggg 58505 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 359 acctgctgcaagtgggatcttcaccagaatcgtcacagatttgctcgatcgggtatacta 418 ||||||||||||| || ||||| ||||| || ||||| |||||||| || | || |||| Sbjct: 58271 acctgctgcaagttgggtcttctccagagtcatcacaaatttgctctattgaatagacta 58330 Query: 419 ggctatcaagtccaatattatgaaccc 445 |||| ||||||||| ||||||||||| Sbjct: 58331 ggcttccaagtccaacattatgaaccc 58357
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 79.8 bits (40), Expect = 8e-12 Identities = 88/104 (84%) Strand = Plus / Plus Query: 260 tattgtcatccgtgacaattctgcatgatccccgcgactcagaatgcatgctgatgccaa 319 |||||||| | |||||||||||||| |||||| | ||| | ||||||||||||||||| Sbjct: 17798134 tattgtcacctgtgacaattctgcaagatcccgatgcctcggcatgcatgctgatgccaa 17798193 Query: 320 gatagtggatatggtcttgcacgctatttccacttacggacctg 363 | |||| |||||||||||||| || |||||||| || |||||| Sbjct: 17798194 ggtagtttatatggtcttgcacactgtttccactcacagacctg 17798237 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 186 ctgatcaactgataaaccaggctgcttcgagaagacaatagtgccatc 233 ||||||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 17798063 ctgatcaactgataaaccaggttgcttcgagaaaacaatgttgccatc 17798110 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 446 catacctctcgtggaaaatgatggtaggttttctgtggg 484 |||||||||||||| |||||||| ||||||||||||||| Sbjct: 17798513 catacctctcgtgggaaatgatgataggttttctgtggg 17798551 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 359 acctgctgcaagtgggatcttcaccagaatcgtcacagatttgctcgatcgggtatacta 418 ||||||||||||| || ||||| ||||| || ||||| |||||||| || | || |||| Sbjct: 17798317 acctgctgcaagttgggtcttctccagagtcatcacaaatttgctctattgaatagacta 17798376 Query: 419 ggctatcaagtccaatattatgaaccc 445 |||| ||||||||| ||||||||||| Sbjct: 17798377 ggcttccaagtccaacattatgaaccc 17798403
>ref|NM_180517.2| Arabidopsis thaliana triacylglycerol lipase AT5G18630 transcript variant AT5G18630.1 mRNA, complete cds Length = 1585 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 342 gctatttccacttacggacctgctgcaagtgggatcttcaccag 385 ||||||||| ||||| || ||||||||||| ||||||||||||| Sbjct: 1098 gctatttccccttaccgatctgctgcaagtaggatcttcaccag 1055
>ref|NM_121868.2| Arabidopsis thaliana triacylglycerol lipase AT5G18630 transcript variant AT5G18630.2 mRNA, complete cds Length = 1606 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 342 gctatttccacttacggacctgctgcaagtgggatcttcaccag 385 ||||||||| ||||| || ||||||||||| ||||||||||||| Sbjct: 1119 gctatttccccttaccgatctgctgcaagtaggatcttcaccag 1076
>gb|BT015039.1| Arabidopsis thaliana At5g18630 gene, complete cds Length = 1077 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 342 gctatttccacttacggacctgctgcaagtgggatcttcaccag 385 ||||||||| ||||| || ||||||||||| ||||||||||||| Sbjct: 879 gctatttccccttaccgatctgctgcaagtaggatcttcaccag 836
>gb|BT000744.1| Arabidopsis thaliana clone RAFL09-77-J22 (R19507) putative triacylglycerol lipase (At5g18630) mRNA, complete cds Length = 1609 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 342 gctatttccacttacggacctgctgcaagtgggatcttcaccag 385 ||||||||| ||||| || ||||||||||| ||||||||||||| Sbjct: 1119 gctatttccccttaccgatctgctgcaagtaggatcttcaccag 1076
>gb|AY058096.1| Arabidopsis thaliana AT5g18630/T1A4_10 mRNA, complete cds Length = 1574 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 342 gctatttccacttacggacctgctgcaagtgggatcttcaccag 385 ||||||||| ||||| || ||||||||||| ||||||||||||| Sbjct: 1087 gctatttccccttaccgatctgctgcaagtaggatcttcaccag 1044
>emb|BX830727.1|CNS09ZGS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZF02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1491 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 342 gctatttccacttacggacctgctgcaagtgggatcttcaccag 385 ||||||||| ||||| || ||||||||||| ||||||||||||| Sbjct: 1099 gctatttccccttaccgatctgctgcaagtaggatcttcaccag 1056
>gb|AF037036.1|AF037036 Zea mays 6-phosphogluconate dehydrogenase gene, partial cds Length = 1599 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 303 atgcatgctgatgccaagatagtggatatggtcttgcacgctatttccacttac 356 |||||| |||| ||||||||||| ||||||||| ||||||| |||||||||| Sbjct: 1151 atgcatactgacgccaagatagtatatatggtctcgcacgctgcttccacttac 1204 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Plus Query: 359 acctgctgcaagtgggatcttcaccagaatcgtcacagat 398 |||||| ||| || || ||||||||||||||||||||||| Sbjct: 1354 acctgcagcatgtagggtcttcaccagaatcgtcacagat 1393 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Plus Query: 447 atacctctcgtggaaaatgatggtaggttttctgtggg 484 ||||||||| ||| || ||||||||||| ||||||||| Sbjct: 1527 atacctctcttgggaagtgatggtaggtcttctgtggg 1564
>emb|AJ488508.1|TAE488508 Triticum aestivum mRNA for triacylglycerol lipase (lipase gene), cultivar Cadenza Length = 1186 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 444 cccatacctctcgtggaaaatgatggtaggttttctg 480 |||||||||||| |||||| ||||||||||| ||||| Sbjct: 769 cccatacctctcttggaaagtgatggtaggtcttctg 733
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 448 tacctctcgtggaaaatgatggtaggttttctgtggg 484 |||||||| ||| |||||||||||||| ||||||||| Sbjct: 41093727 tacctctcttgggaaatgatggtaggtcttctgtggg 41093763 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 376 tcttcaccagaatcgtcacagatttgctcgatcgggtatactaggct 422 |||||||||||||| |||||||| ||||| | || ||| |||||||| Sbjct: 41093400 tcttcaccagaatcatcacagatctgctctaccgagtacactaggct 41093446 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 304 tgcatgctgatgccaagatagtggatatggtcttgcacgct 344 |||||||||| ||| ||||||| || |||||||||||||| Sbjct: 41093175 tgcatgctgacgccgagatagtatatgtggtcttgcacgct 41093215
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 448 tacctctcgtggaaaatgatggtaggttttctgtggg 484 |||||||| ||| |||||||||||||| ||||||||| Sbjct: 130657 tacctctcttgggaaatgatggtaggtcttctgtggg 130693 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 376 tcttcaccagaatcgtcacagatttgctcgatcgggtatactaggct 422 |||||||||||||| |||||||| ||||| | || ||| |||||||| Sbjct: 130330 tcttcaccagaatcatcacagatctgctctaccgagtacactaggct 130376 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 304 tgcatgctgatgccaagatagtggatatggtcttgcacgct 344 |||||||||| ||| ||||||| || |||||||||||||| Sbjct: 130105 tgcatgctgacgccgagatagtatatgtggtcttgcacgct 130145
>ref|NM_203076.1| Arabidopsis thaliana triacylglycerol lipase AT5G18630 transcript variant AT5G18630.3 mRNA, complete cds Length = 1157 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 359 acctgctgcaagtgggatcttcaccag 385 ||||||||||||| ||||||||||||| Sbjct: 1081 acctgctgcaagtaggatcttcaccag 1055
>gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis thaliana Clone T1A4 From Chromosome V, complete sequence Length = 85746 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 359 acctgctgcaagtgggatcttcaccag 385 ||||||||||||| ||||||||||||| Sbjct: 57319 acctgctgcaagtaggatcttcaccag 57345
>emb|AJ488507.1|TAE488507 Triticum aestivum mRNA for triacylglycerol lipase (lipase gene), cultivar Hereward Length = 1053 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 444 cccatacctctcgtggaaaatgatggtagg 473 |||||||||||| |||||| |||||||||| Sbjct: 766 cccatacctctcttggaaagtgatggtagg 737
>gb|AC163657.3| Mus musculus BAC clone RP24-302A24 from chromosome 1, complete sequence Length = 197913 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 atgcatgctgatgccaagata 323 ||||||||||||||||||||| Sbjct: 73428 atgcatgctgatgccaagata 73408
>gb|AC146131.4| Pan troglodytes BAC clone RP43-4F15 from 7, complete sequence Length = 179576 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 tacatttcagaaatacaccct 34 ||||||||||||||||||||| Sbjct: 663 tacatttcagaaatacaccct 643
>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome Length = 1884661 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 ctatcaagtccaatattatga 441 ||||||||||||||||||||| Sbjct: 416602 ctatcaagtccaatattatga 416622
>gb|AC102735.9| Mus musculus chromosome 5, clone RP24-237I4, complete sequence Length = 167871 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 117118 cacacgtgtatatatacatg 117137
>ref|XM_872356.1| PREDICTED: Bos taurus similar to glutaminase GA isoform b, transcript variant 5 (LOC539561), mRNA Length = 2487 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 atcacacgtgtatatataca 81 |||||||||||||||||||| Sbjct: 2336 atcacacgtgtatatataca 2355
>ref|XM_872254.1| PREDICTED: Bos taurus similar to glutaminase GA isoform b, transcript variant 4 (LOC539561), mRNA Length = 1425 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 atcacacgtgtatatataca 81 |||||||||||||||||||| Sbjct: 1274 atcacacgtgtatatataca 1293
>ref|XM_588075.2| PREDICTED: Bos taurus similar to glutaminase GA isoform b, transcript variant 1 (LOC539561), mRNA Length = 3384 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 atcacacgtgtatatataca 81 |||||||||||||||||||| Sbjct: 2324 atcacacgtgtatatataca 2343
>gb|AC108881.3| Homo sapiens chromosome X clone RP11-21D3 map p11.4, complete sequence Length = 163215 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 44435 cacacgtgtatatatacatg 44416
>gb|AC108880.2| Homo sapiens chromosome X clone RP11-403L9 map p11.4, complete sequence Length = 218413 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 198455 cacacgtgtatatatacatg 198436
>gb|AC112938.11| Mus musculus chromosome 5, clone RP24-72E12, complete sequence Length = 235924 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 tgtatgtacatttcagaaatacac 31 ||||||||||| |||||||||||| Sbjct: 186200 tgtatgtacatgtcagaaatacac 186223
>gb|AC120869.12| Mus musculus chromosome 9, clone RP23-128A11, complete sequence Length = 244776 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 agaaatacaccctcagctag 41 |||||||||||||||||||| Sbjct: 167603 agaaatacaccctcagctag 167622
>gb|AC146213.2| Pan troglodytes BAC clone RP43-33O10 from 7, complete sequence Length = 187649 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 83962 cacacgtgtatatatacatg 83943
>gb|AC127502.6| Homo sapiens chromosome 15, clone CTD-3092A11, complete sequence Length = 69293 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 acacgtgtatatatacatga 84 |||||||||||||||||||| Sbjct: 30835 acacgtgtatatatacatga 30854
>gb|AC005521.1| Homo sapiens PAC clone RP5-1106E3 from 7, complete sequence Length = 136495 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ataaatatgtatgtacattt 20 |||||||||||||||||||| Sbjct: 134357 ataaatatgtatgtacattt 134376
>gb|AC005014.2| Homo sapiens BAC clone GS1-166A23 from 7, complete sequence Length = 168247 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ataaatatgtatgtacattt 20 |||||||||||||||||||| Sbjct: 18358 ataaatatgtatgtacattt 18377
>emb|AL354681.8| Human DNA sequence from clone RP11-534L20 on chromosome 1 Contains the IKBKE gene for inhibitor of kappa light polypeptide gene enhancer in B-cells kinase epsilon, a novel gene, the 5' end of the RASSF5 gene for Ras association (RalGDS/AF-6) domain family 5, a ribosomal protein L7a (RPL7A) pseudogene and a CpG island, complete sequence Length = 107689 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 77193 cacacgtgtatatatacatg 77174
>gb|AC175363.2| Pan troglodytes chromosome X clone CH251-7A1 map human ortholog p11.4, complete sequence Length = 221738 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 1851 cacacgtgtatatatacatg 1832
>gb|AF545435.1| Homo sapiens thymine-DNA glycosylase (TDG) gene, complete cds Length = 25621 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 20604 cacacgtgtatatatacatg 20623
>emb|CR354559.6| Zebrafish DNA sequence from clone CH211-210F24 in linkage group 17, complete sequence Length = 54604 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 177 actgagtagctgatcaactgataaacca 204 ||||| ||||||| |||||||||||||| Sbjct: 49799 actgactagctgaccaactgataaacca 49772
>gb|AC127486.3| Homo sapiens chromosome 15, clone CTD-2012K22, complete sequence Length = 89716 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 acacgtgtatatatacatga 84 |||||||||||||||||||| Sbjct: 19897 acacgtgtatatatacatga 19916
>gb|AC161766.2| Mus musculus BAC clone RP23-39O12 from chromosome 12, complete sequence Length = 224641 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tgagatagtcctttgattgccaac 105 |||||| ||||||||||||||||| Sbjct: 211282 tgagattgtcctttgattgccaac 211259
>emb|BX957299.8| Zebrafish DNA sequence from clone DKEY-179E8 in linkage group 19, complete sequence Length = 168017 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 aaatgatggtaggttttctg 480 |||||||||||||||||||| Sbjct: 46011 aaatgatggtaggttttctg 46030
>emb|CR788244.9| Zebrafish DNA sequence from clone DKEY-254A16 in linkage group 18, complete sequence Length = 208154 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 aaatgatggtaggttttctg 480 |||||||||||||||||||| Sbjct: 32883 aaatgatggtaggttttctg 32902
>emb|BX957333.8| Zebrafish DNA sequence from clone CH211-10M5 in linkage group 25, complete sequence Length = 170161 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 aaatgatggtaggttttctg 480 |||||||||||||||||||| Sbjct: 125167 aaatgatggtaggttttctg 125186
>emb|AL627132.4| Zebrafish DNA sequence from clone RP71-1H3 in linkage group 13 Contains part of a putative novel gene, a novel LINE element similar to X. laevis TX1 and two CpG islands, complete sequence Length = 146039 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 aaatgatggtaggttttctg 480 |||||||||||||||||||| Sbjct: 113511 aaatgatggtaggttttctg 113530
>emb|BX897696.12| Zebrafish DNA sequence from clone DKEY-111B14 in linkage group 20, complete sequence Length = 175787 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 aaatgatggtaggttttctg 480 |||||||||||||||||||| Sbjct: 21901 aaatgatggtaggttttctg 21882
>emb|CR450846.7| Zebrafish DNA sequence from clone DKEY-99O2 in linkage group 5, complete sequence Length = 29852 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 aaatgatggtaggttttctg 480 |||||||||||||||||||| Sbjct: 4330 aaatgatggtaggttttctg 4311
>dbj|AK094589.1| Homo sapiens cDNA FLJ37270 fis, clone BRAMY2011811 Length = 3134 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 1801 cacacgtgtatatatacatg 1782
>gb|AC021818.9| Homo sapiens chromosome 15, clone RP11-19J5, complete sequence Length = 168639 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gccaactttgtacctgagca 259 |||||||||||||||||||| Sbjct: 14555 gccaactttgtacctgagca 14574
>emb|BX908749.6| Zebrafish DNA sequence from clone DKEY-247F18 in linkage group 18, complete sequence Length = 186014 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 aaatgatggtaggttttctg 480 |||||||||||||||||||| Sbjct: 23394 aaatgatggtaggttttctg 23413
>gb|AC159880.2| Mus musculus BAC clone RP24-490L14 from chromosome 9, complete sequence Length = 142451 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ataaatatgtatgtacattt 20 |||||||||||||||||||| Sbjct: 50024 ataaatatgtatgtacattt 50043
>emb|BX004772.17| Zebrafish DNA sequence from clone DKEY-15L1 in linkage group 7, complete sequence Length = 210545 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 agtagctgatcaactgataa 200 |||||||||||||||||||| Sbjct: 232 agtagctgatcaactgataa 213
>gb|AC123768.8| Homo sapiens chromosome 15, clone RP11-1000B6, complete sequence Length = 186455 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 acacgtgtatatatacatga 84 |||||||||||||||||||| Sbjct: 11646 acacgtgtatatatacatga 11665
>gb|AC007218.6| Homo sapiens chromosome 16 clone RP11-297M9, complete sequence Length = 193220 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 atcacacgtgtatatataca 81 |||||||||||||||||||| Sbjct: 160678 atcacacgtgtatatataca 160659
>gb|AC078789.16| Homo sapiens 12 BAC RP11-769N19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 197554 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 13990 cacacgtgtatatatacatg 14009
>gb|AC078819.24| Homo sapiens 12q BAC RP11-490H24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172319 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 61616 cacacgtgtatatatacatg 61635
>gb|AC111164.6| Homo sapiens chromosome 15, clone RP11-1109N12, complete sequence Length = 144563 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 acacgtgtatatatacatga 84 |||||||||||||||||||| Sbjct: 116481 acacgtgtatatatacatga 116500
>emb|BX005004.12| Zebrafish DNA sequence from clone DKEY-11L18, complete sequence Length = 216131 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 177 actgagtagctgatcaactgataaacca 204 ||||| ||||||| |||||||||||||| Sbjct: 184860 actgactagctgaccaactgataaacca 184887
>dbj|AB097139.1| Danio rerio retrotransposon KibiDr2 DNA, complete sequence Length = 5400 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 aaatgatggtaggttttctg 480 |||||||||||||||||||| Sbjct: 1989 aaatgatggtaggttttctg 2008
>dbj|AB092690.1| Oryzias latipes GnRH-R1 gene for gonadotropin-releasing hormone receptor 1, complete cds Length = 14720 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 tatcaagtccaatattatga 441 |||||||||||||||||||| Sbjct: 9051 tatcaagtccaatattatga 9032
>gb|AC006531.1|AC006531 Homo sapiens chromosome 16 clone 113K5, complete sequence Length = 167525 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 atcacacgtgtatatataca 81 |||||||||||||||||||| Sbjct: 39643 atcacacgtgtatatataca 39624
>emb|Y10575.1|HSY10575 H.sapiens TDG gene, exon 6 & 7 Length = 1169 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 404 cacacgtgtatatatacatg 423
>gb|AC113964.18| Mus musculus chromosome 16, clone RP23-31O16, complete sequence Length = 213851 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cacacgtgtatatatacatg 83 |||||||||||||||||||| Sbjct: 81962 cacacgtgtatatatacatg 81943
>emb|CR933785.11| Zebrafish DNA sequence from clone CH211-57C18 in linkage group 18, complete sequence Length = 66881 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 aaatgatggtaggttttctg 480 |||||||||||||||||||| Sbjct: 17631 aaatgatggtaggttttctg 17650
>emb|AM041147.2| Mus musculus chromosome 12 BAC clone 407i12 Length = 136395 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ataaatatgtatgtacattt 20 |||||||||||||||||||| Sbjct: 34849 ataaatatgtatgtacattt 34830
>emb|CT025619.9| Mouse DNA sequence from clone RP23-442M18 on chromosome 9, complete sequence Length = 193329 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ataaatatgtatgtacattt 20 |||||||||||||||||||| Sbjct: 74605 ataaatatgtatgtacattt 74624
>emb|AJ972403.2| Mus musculus chromosome 12 BAC clone 4k8 Length = 149371 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ataaatatgtatgtacattt 20 |||||||||||||||||||| Sbjct: 144377 ataaatatgtatgtacattt 144358
>emb|AJ972404.2| Mus musculus chromosome 12 BAC clone 4k8 Length = 152217 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ataaatatgtatgtacattt 20 |||||||||||||||||||| Sbjct: 50671 ataaatatgtatgtacattt 50652
>gb|AC009677.21| Homo sapiens chromosome 15, clone RP11-54P21, complete sequence Length = 194529 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gccaactttgtacctgagca 259 |||||||||||||||||||| Sbjct: 177688 gccaactttgtacctgagca 177707 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,831,488 Number of Sequences: 3902068 Number of extensions: 4831488 Number of successful extensions: 97368 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97188 Number of HSP's gapped (non-prelim): 168 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)