ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38i01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009363.1| Triticum aestivum clone wlm96.pk027.k16:fis, full... 418 e-114
2dbj|AK100521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 377 e-101
3dbj|AK070636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 361 2e-96
4gb|AY112479.1| Zea mays CL8873_1 mRNA sequence 226 6e-56
5gb|AC124141.2| Oryza sativa (japonica cultivar-group) chromosome... 202 9e-49
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 202 9e-49
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
8dbj|AK065718.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
9dbj|AK065708.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
10dbj|AK061697.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
11gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 64 5e-07
12emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007... 64 5e-07
13emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494... 64 5e-07
14gb|BT008939.1| Triticum aestivum clone wdi1c.pk006.f3:fis, full ... 56 1e-04
15gb|BT014559.1| Lycopersicon esculentum clone 134012R, mRNA sequence 52 0.002
16dbj|AB236768.1| Trifolium pratense RNA for putative long chain a... 44 0.50
17gb|AC091436.3| Felis catus clone RP86-87J17, complete sequence 42 2.0
18gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's H... 42 2.0
19gb|AC159091.2| Mus musculus chromosome 15, clone RP24-283J18, co... 42 2.0
20gb|AC090897.4| Homo sapiens chromosome 18, clone RP11-61D1, comp... 42 2.0
21gb|AF146775.1|AF146775 Salmo salar thyroid hormone receptor alph... 42 2.0
22gb|AF132752.1|OMTHRA2 Oncorhynchus mykiss thyroid hormone recept... 42 2.0
23gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, co... 40 7.9
24gb|AC115705.13| Mus musculus chromosome 3, clone RP23-390C13, co... 40 7.9
25gb|AC122935.3| Mus musculus BAC clone RP23-20E4 from chromosome ... 40 7.9
26emb|BX936451.13| Zebrafish DNA sequence from clone CH211-201F1 i... 40 7.9
27emb|AL592148.7| Human DNA sequence from clone RP11-378J18 on chr... 40 7.9
28emb|AL137018.9| Human DNA sequence from clone RP11-133M9 on chro... 40 7.9
29gb|AC016252.21| Homo sapiens 3 BAC RP11-461M2 (Roswell Park Canc... 40 7.9
30emb|BX883046.1| Rattus norvegicus chromosome 20, major histocomp... 40 7.9
31gb|AC161766.2| Mus musculus BAC clone RP23-39O12 from chromosome... 40 7.9
32emb|AL845484.9| Mouse DNA sequence from clone RP23-336L14 on chr... 40 7.9
33emb|AJ314857.1|RNO314857 Rattus norvegicus Nfkbil1 gene (partial... 40 7.9
34emb|CR382291.11| Zebrafish DNA sequence from clone CH211-245G10,... 40 7.9
35emb|CR352326.5| Zebrafish DNA sequence from clone CH211-105K20 i... 40 7.9
36gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete se... 40 7.9
37emb|BX629340.6| Zebrafish DNA sequence from clone DKEY-183O11 in... 40 7.9
38gb|AF387339.1| Rattus norvegicus IkBL, vacuolar ATPase NG38, Bat... 40 7.9
39gb|AC106013.2| Homo sapiens chromosome 8, clone RP11-1109L18, co... 40 7.9
40gb|AC008147.31| Homo sapiens 12 BAC RP3-405J10 (Roswell Park Can... 40 7.9
41gb|AC106743.4| Homo sapiens chromosome 16 clone RP11-116D9, comp... 40 7.9
42gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, comple... 40 7.9
43gb|AC012486.9| Homo sapiens BAC clone RP11-84A12 from 2, complet... 40 7.9
44gb|AC022816.15|AC022816 Homo sapiens chromosome 17, clone RP11-6... 40 7.9
45emb|AL935199.4| Zebrafish DNA sequence from clone CH211-241L3, c... 40 7.9
46emb|BX255913.8| Zebrafish DNA sequence from clone DKEY-85N7 in l... 40 7.9
47emb|AL954145.13| Zebrafish DNA sequence from clone CH211-284E20 ... 40 7.9
48emb|Z36055.1|SCYBR186W S.cerevisiae chromosome II reading frame ... 40 7.9
49emb|AL132855.4|CNS01DTR Human chromosome 14 DNA sequence BAC C-2... 40 7.9
50dbj|AP005716.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.9
51emb|BX323826.6| Zebrafish DNA sequence from clone CH211-57H10 in... 40 7.9
52emb|BX004791.6| Mouse DNA sequence from clone RP24-233L10 on chr... 40 7.9
53gb|AC151735.3| Mus musculus BAC clone RP23-24D16 from 9, complet... 40 7.9
54emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chr... 40 7.9
55gb|U02073.1|SCCIIMJB Saccharomyces cerevisiae alphaS288C ribosom... 40 7.9
56emb|AL158800.6|CNS01RGM Human chromosome 14 DNA sequence BAC R-3... 40 7.9
57gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome ... 40 7.9
58gb|DQ007342.1| Ginglymostoma cirratum complement component Bf/C2... 40 7.9
59emb|AL669961.8| Mouse DNA sequence from clone RP23-43M17 on chro... 40 7.9 
>gb|BT009363.1| Triticum aestivum clone wlm96.pk027.k16:fis, full insert mRNA
           sequence
          Length = 824

 Score =  418 bits (211), Expect = e-114
 Identities = 217/219 (99%)
 Strand = Plus / Minus

                                                                       
Query: 361 gctgctttcgcggcctttgatagagattgctggacctccttaattgcttgatcattgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gctgctttcgcggcctttgatagagattgctggacctccttaattgcttgatcattgtga 761

                                                                       
Query: 421 caaagctcctcaatgtctttgtagcttatccctgaattttgagcccacttctccaaggcc 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cacagctcctcaatgtctttgtagcttatccctgaattttgagcccacttctccaaggcc 701

                                                                       
Query: 481 tggtgtggtggcactaccagtgcaacacagtaactatgaaatggatcagcatagaccatg 540
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tggtgtggtggcacgaccagtgcaacacagtaactatgaaatggatcagcatagaccatg 641

                                                  
Query: 541 atgttgtccacataattgcttgtctgtagagctgattca 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 640 atgttgtccacataattgcttgtctgtagagctgattca 602
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>dbj|AK100521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100L19, full
            insert sequence
          Length = 2748

 Score =  377 bits (190), Expect = e-101
 Identities = 325/370 (87%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagtggtagagcttgttcaggtcatctttgaatttggtcttcagctgctccctcttcag 269
            |||||| |||||||||  ||| |||||||||||||||||||| | |||||||||||||||
Sbjct: 2420 tcagtgatagagcttgcccagatcatctttgaatttggtctttatctgctccctcttcag 2361

                                                                        
Query: 270  cttaagcgcagcggtcacaagcccagactctggagtccaaggttcaggcagcaaaacaat 329
             ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 2360 tttaagtgcagctgtcaccagcccagactctggagtccatggttcaggcagcaacacaat 2301

                                                                        
Query: 330  cttggctggtatctcgaacttctcgagccttgctgctttcgcggcctttgatagagattg 389
            ||| |||||||| || |||||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 2300 ctttgctggtatttcaaacttctcaagcctcgctgcttttgcagcctttgatagagattg 2241

                                                                        
Query: 390  ctggacctccttaattgcttgatcattgtgacaaagctcctcaatgtctttgtagcttat 449
            ||||||||||||||| |||||||||||||| || ||||| |||| || ||||||| | ||
Sbjct: 2240 ctggacctccttaatggcttgatcattgtggcacagctcatcaaagtttttgtagttaat 2181

                                                                        
Query: 450  ccctgaattttgagcccacttctccaaggcctggtgtggtggcactaccagtgcaacaca 509
            ||| |||||||||||||||| ||| ||||||||||| |  ||||||||||  || |||||
Sbjct: 2180 cccagaattttgagcccactgctctaaggcctggtgcgccggcactaccaacgccacaca 2121

                                                                        
Query: 510  gtaactatgaaatggatcagcatagaccatgatgttgtccacataattgcttgtctgtag 569
             ||| ||||||||||||||||||| ||||| ||| |||||||||||||||| ||   |||
Sbjct: 2120 ataattatgaaatggatcagcataaaccattatgctgtccacataattgctagtagttag 2061

                      
Query: 570  agctgattca 579
            ||||||||||
Sbjct: 2060 agctgattca 2051
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>dbj|AK070636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F23, full
            insert sequence
          Length = 2675

 Score =  361 bits (182), Expect = 2e-96
 Identities = 324/370 (87%), Gaps = 1/370 (0%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagtggtagagcttgttcaggtcatctttgaatttggtcttcagctgctccctcttcag 269
            |||||| |||||||||  ||| |||||||||||||||||||| | |||||||||||||||
Sbjct: 2406 tcagtgatagagcttgcccagatcatctttgaatttggtctttatctgctccctcttcag 2347

                                                                        
Query: 270  cttaagcgcagcggtcacaagcccagactctggagtccaaggttcaggcagcaaaacaat 329
             ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 2346 tttaagtgcagctgtcaccagcccagactctggagtccatggttcaggcagcaacacaat 2287

                                                                        
Query: 330  cttggctggtatctcgaacttctcgagccttgctgctttcgcggcctttgatagagattg 389
            ||| |||||||| || |||||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 2286 ctttgctggtatttcaaacttctcaagcctcgctgcttttgcagcctttgatagagattg 2227

                                                                        
Query: 390  ctggacctccttaattgcttgatcattgtgacaaagctcctcaatgtctttgtagcttat 449
            |||||||||| |||| |||||||||||||| || ||||| |||| || ||||||| | ||
Sbjct: 2226 ctggacctcc-taatggcttgatcattgtggcacagctcatcaaagtttttgtagttaat 2168

                                                                        
Query: 450  ccctgaattttgagcccacttctccaaggcctggtgtggtggcactaccagtgcaacaca 509
            ||| |||||||||||||||| ||| ||||||||||| |  ||||||||||  || |||||
Sbjct: 2167 cccagaattttgagcccactgctctaaggcctggtgcgccggcactaccaacgccacaca 2108

                                                                        
Query: 510  gtaactatgaaatggatcagcatagaccatgatgttgtccacataattgcttgtctgtag 569
             ||| ||||||||||||||||||| ||||| ||| |||||||||||||||| ||   |||
Sbjct: 2107 ataattatgaaatggatcagcataaaccattatgctgtccacataattgctagtagttag 2048

                      
Query: 570  agctgattca 579
            ||||||||||
Sbjct: 2047 agctgattca 2038
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>gb|AY112479.1| Zea mays CL8873_1 mRNA sequence
          Length = 973

 Score =  226 bits (114), Expect = 6e-56
 Identities = 294/354 (83%)
 Strand = Plus / Plus

                                                                       
Query: 210 tcagtggtagagcttgttcaggtcatctttgaatttggtcttcagctgctccctcttcag 269
           ||||||||||||||||| ||| || ||||||||||||| ||| | |||||||||||||||
Sbjct: 246 tcagtggtagagcttgtccagatcgtctttgaatttggcctttatctgctccctcttcag 305

                                                                       
Query: 270 cttaagcgcagcggtcacaagcccagactctggagtccaaggttcaggcagcaaaacaat 329
           ||||||||| || ||||| ||||| ||||| || ||||| || ||||||||||   | ||
Sbjct: 306 cttaagcgccgccgtcaccagcccggactccggcgtccacggctcaggcagcagctcgat 365

                                                                       
Query: 330 cttggctggtatctcgaacttctcgagccttgctgctttcgcggcctttgatagagattg 389
           ||| || || | ||||||  |||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 366 cttcgccggcacctcgaatctctccagcctcgctgctttcgcggccttcgatagtgattg 425

                                                                       
Query: 390 ctggacctccttaattgcttgatcattgtgacaaagctcctcaatgtctttgtagcttat 449
           ||| ||||||||||  || ||  |||| || |||||||| |||| | |||   || ||||
Sbjct: 426 ctgaacctccttaaccgcctggccattttggcaaagctcttcaaagccttcacagtttat 485

                                                                       
Query: 450 ccctgaattttgagcccacttctccaaggcctggtgtggtggcactaccagtgcaacaca 509
           ||| |||||||||||||||||||||| ||||||| ||  ||| || ||||| ||||||||
Sbjct: 486 cccagaattttgagcccacttctccagggcctggcgtactggaacaaccagggcaacaca 545

                                                                 
Query: 510 gtaactatgaaatggatcagcatagaccatgatgttgtccacataattgcttgt 563
           |||  |||| || ||||| || |||||||||||| | |||||||| ||||||||
Sbjct: 546 gtagttatggaacggatcggcgtagaccatgatgctctccacatagttgcttgt 599
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>gb|AC124141.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0065C11,
              complete sequence
          Length = 141578

 Score =  202 bits (102), Expect = 9e-49
 Identities = 180/206 (87%)
 Strand = Plus / Minus

                                                                          
Query: 374    cctttgatagagattgctggacctccttaattgcttgatcattgtgacaaagctcctcaa 433
              ||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 104310 cctttgatagagattgctggacctccttaatggcttgatcattgtggcacagctcatcaa 104251

                                                                          
Query: 434    tgtctttgtagcttatccctgaattttgagcccacttctccaaggcctggtgtggtggca 493
               || ||||||| | ||||| |||||||||||||||| ||| ||||||||||| |  ||||
Sbjct: 104250 agtttttgtagttaatcccagaattttgagcccactgctctaaggcctggtgcgccggca 104191

                                                                          
Query: 494    ctaccagtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacat 553
              ||||||  || ||||| ||| ||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 104190 ctaccaacgccacacaataattatgaaatggatcagcataaaccattatgctgtccacat 104131

                                        
Query: 554    aattgcttgtctgtagagctgattca 579
              ||||||| ||   |||||||||||||
Sbjct: 104130 aattgctagtagttagagctgattca 104105



 Score =  180 bits (91), Expect = 3e-42
 Identities = 142/159 (89%)
 Strand = Plus / Minus

                                                                          
Query: 210    tcagtggtagagcttgttcaggtcatctttgaatttggtcttcagctgctccctcttcag 269
              |||||| |||||||||  ||| |||||||||||||||||||| | |||||||||||||||
Sbjct: 105545 tcagtgatagagcttgcccagatcatctttgaatttggtctttatctgctccctcttcag 105486

                                                                          
Query: 270    cttaagcgcagcggtcacaagcccagactctggagtccaaggttcaggcagcaaaacaat 329
               ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 105485 tttaagtgcagctgtcaccagcccagactctggagtccatggttcaggcagcaacacaat 105426

                                                     
Query: 330    cttggctggtatctcgaacttctcgagccttgctgcttt 368
              ||| |||||||| || |||||||| ||||| ||||||||
Sbjct: 105425 ctttgctggtatttcaaacttctcaagcctcgctgcttt 105387
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  202 bits (102), Expect = 9e-49
 Identities = 180/206 (87%)
 Strand = Plus / Minus

                                                                            
Query: 374      cctttgatagagattgctggacctccttaattgcttgatcattgtgacaaagctcctcaa 433
                ||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 14566305 cctttgatagagattgctggacctccttaatggcttgatcattgtggcacagctcatcaa 14566246

                                                                            
Query: 434      tgtctttgtagcttatccctgaattttgagcccacttctccaaggcctggtgtggtggca 493
                 || ||||||| | ||||| |||||||||||||||| ||| ||||||||||| |  ||||
Sbjct: 14566245 agtttttgtagttaatcccagaattttgagcccactgctctaaggcctggtgcgccggca 14566186

                                                                            
Query: 494      ctaccagtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacat 553
                ||||||  || ||||| ||| ||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 14566185 ctaccaacgccacacaataattatgaaatggatcagcataaaccattatgctgtccacat 14566126

                                          
Query: 554      aattgcttgtctgtagagctgattca 579
                ||||||| ||   |||||||||||||
Sbjct: 14566125 aattgctagtagttagagctgattca 14566100



 Score =  180 bits (91), Expect = 3e-42
 Identities = 142/159 (89%)
 Strand = Plus / Minus

                                                                            
Query: 210      tcagtggtagagcttgttcaggtcatctttgaatttggtcttcagctgctccctcttcag 269
                |||||| |||||||||  ||| |||||||||||||||||||| | |||||||||||||||
Sbjct: 14567540 tcagtgatagagcttgcccagatcatctttgaatttggtctttatctgctccctcttcag 14567481

                                                                            
Query: 270      cttaagcgcagcggtcacaagcccagactctggagtccaaggttcaggcagcaaaacaat 329
                 ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 14567480 tttaagtgcagctgtcaccagcccagactctggagtccatggttcaggcagcaacacaat 14567421

                                                       
Query: 330      cttggctggtatctcgaacttctcgagccttgctgcttt 368
                ||| |||||||| || |||||||| ||||| ||||||||
Sbjct: 14567420 ctttgctggtatttcaaacttctcaagcctcgctgcttt 14567382
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 499     agtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacata 554
               ||||||||||||||||| || || |||||||||| || ||||||||| ||||||||
Sbjct: 3487475 agtgcaacacagtaactgtggaaaggatcagcatggatcatgatgttctccacata 3487420
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>dbj|AK065718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042P14, full
            insert sequence
          Length = 3309

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 499  agtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacata 554
            ||||||||||||||||| || || |||||||||| || ||||||||| ||||||||
Sbjct: 2769 agtgcaacacagtaactgtggaaaggatcagcatggatcatgatgttctccacata 2714
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>dbj|AK065708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041H23, full
            insert sequence
          Length = 2497

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 499  agtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacata 554
            ||||||||||||||||| || || |||||||||| || ||||||||| ||||||||
Sbjct: 1957 agtgcaacacagtaactgtggaaaggatcagcatggatcatgatgttctccacata 1902
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>dbj|AK061697.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-D01, full
            insert sequence
          Length = 1552

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 499  agtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacata 554
            ||||||||||||||||| || || |||||||||| || ||||||||| ||||||||
Sbjct: 1035 agtgcaacacagtaactgtggaaaggatcagcatggatcatgatgttctccacata 980
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 499     agtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacata 554
               ||||||||||||||||| || || |||||||||| || ||||||||| ||||||||
Sbjct: 3487420 agtgcaacacagtaactgtggaaaggatcagcatggatcatgatgttctccacata 3487365
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>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 103647

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 499  agtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacata 554
            ||||||||||||||||| || || |||||||||| || ||||||||| ||||||||
Sbjct: 2403 agtgcaacacagtaactgtggaaaggatcagcatggatcatgatgttctccacata 2348
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>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 116371

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                     
Query: 499   agtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacata 554
             ||||||||||||||||| || || |||||||||| || ||||||||| ||||||||
Sbjct: 44440 agtgcaacacagtaactgtggaaaggatcagcatggatcatgatgttctccacata 44495
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>gb|BT008939.1| Triticum aestivum clone wdi1c.pk006.f3:fis, full insert mRNA sequence
          Length = 2700

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 499  agtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacata 554
            ||||||||||||||||| ||||| ||||| |||| || ||||||||| || |||||
Sbjct: 2017 agtgcaacacagtaactgtgaaaaggatcggcatggatcatgatgttctcaacata 1962
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>gb|BT014559.1| Lycopersicon esculentum clone 134012R, mRNA sequence
          Length = 2280

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 259  tccctcttcagcttaagcgcagcggtcacaagcccagactctggagtcca 308
            |||||||||||||| |  || || |||||||||||||||||||| |||||
Sbjct: 2133 tccctcttcagcttcaaagctgcagtcacaagcccagactctggtgtcca 2084
to top
>dbj|AB236768.1| Trifolium pratense RNA for putative long chain acyl-CoA synthetase 9,
            complete cds, clone: C1568
          Length = 2570

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 499  agtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtc 548
            ||||| ||||||||||| ||||| | ||||||||| | ||| ||||||||
Sbjct: 2028 agtgccacacagtaactttgaaaagaatcagcatataacataatgttgtc 1979
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>gb|AC091436.3| Felis catus clone RP86-87J17, complete sequence
          Length = 149907

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 155    aaagaaatacaaattatttataaca 179
              ||||||||| |||||||||||||||
Sbjct: 124211 aaagaaataaaaattatttataaca 124235
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>gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 216194

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 474    caaggcctggtgtggtggcac 494
              |||||||||||||||||||||
Sbjct: 208396 caaggcctggtgtggtggcac 208376
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>gb|AC159091.2| Mus musculus chromosome 15, clone RP24-283J18, complete sequence
          Length = 65063

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    aacacctttatcctgacccag 76
             |||||||||||||||||||||
Sbjct: 25226 aacacctttatcctgacccag 25246
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>gb|AC090897.4| Homo sapiens chromosome 18, clone RP11-61D1, complete sequence
          Length = 157606

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 519 aaatggatcagcatagaccatgatg 543
           |||||||||||||||||||| ||||
Sbjct: 749 aaatggatcagcatagaccaggatg 725
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>gb|AF146775.1|AF146775 Salmo salar thyroid hormone receptor alpha (TR-alpha) mRNA, complete
            cds
          Length = 1436

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 248  tcttcagctgctccctcttca 268
            |||||||||||||||||||||
Sbjct: 1023 tcttcagctgctccctcttca 1003
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>gb|AF132752.1|OMTHRA2 Oncorhynchus mykiss thyroid hormone receptor alpha gene, exon 5
          Length = 258

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 tcttcagctgctccctcttca 268
           |||||||||||||||||||||
Sbjct: 142 tcttcagctgctccctcttca 122
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>gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, complete sequence
          Length = 192019

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    agtccaaggttcaggcagca 322
              ||||||||||||||||||||
Sbjct: 118754 agtccaaggttcaggcagca 118735
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>gb|AC115705.13| Mus musculus chromosome 3, clone RP23-390C13, complete sequence
          Length = 207221

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  tcagtggtagagcttgttca 229
            ||||||||||||||||||||
Sbjct: 3197 tcagtggtagagcttgttca 3178
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>gb|AC122935.3| Mus musculus BAC clone RP23-20E4 from chromosome 3, complete sequence
          Length = 191153

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    tcagtggtagagcttgttca 229
              ||||||||||||||||||||
Sbjct: 163619 tcagtggtagagcttgttca 163600
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>emb|BX936451.13| Zebrafish DNA sequence from clone CH211-201F1 in linkage group 21,
             complete sequence
          Length = 169828

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 154   caaagaaatacaaattatttataa 177
             |||| |||||||||||||||||||
Sbjct: 29177 caaataaatacaaattatttataa 29200
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>emb|AL592148.7| Human DNA sequence from clone RP11-378J18 on chromosome 1 Contains the
              gene for a novel protein (FLJ13840), the TAF1A gene for
              TATA box binding protein (TBP)-associated factor, RNA
              polymerase I, A, 48kDa, two novel genes, the gene for
              C219-reactive peptide (FLJ39207), the 3' of the gene for a
              novel protein (FLJ12806) and a CpG island, complete
              sequence
          Length = 194034

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 473    ccaaggcctggtgtggtggc 492
              ||||||||||||||||||||
Sbjct: 153832 ccaaggcctggtgtggtggc 153851
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>emb|AL137018.9| Human DNA sequence from clone RP11-133M9 on chromosome 9q13-21.33
             Contains the 3' end of the RORB gene for RAR-related
             orphan receptor B protein (RZRB, ROR-BETA), complete
             sequence
          Length = 157168

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 389   gctggacctccttaattgcttgatcatt 416
             |||||||||||||||||  |||||||||
Sbjct: 55363 gctggacctccttaattatttgatcatt 55336
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>gb|AC016252.21| Homo sapiens 3 BAC RP11-461M2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164953

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 473    ccaaggcctggtgtggtggc 492
              ||||||||||||||||||||
Sbjct: 112189 ccaaggcctggtgtggtggc 112208
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>emb|BX883046.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 5/11
          Length = 349047

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 475   aaggcctggtgtggtggcac 494
             ||||||||||||||||||||
Sbjct: 82744 aaggcctggtgtggtggcac 82725
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>gb|AC161766.2| Mus musculus BAC clone RP23-39O12 from chromosome 12, complete sequence
          Length = 224641

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    caaagaaatacaaattattt 173
              ||||||||||||||||||||
Sbjct: 145738 caaagaaatacaaattattt 145719
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>emb|AL845484.9| Mouse DNA sequence from clone RP23-336L14 on chromosome 11 Contains
            the 3' end of the Sez6 gene for seizure related gene 6,
            complete sequence
          Length = 47702

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 475  aaggcctggtgtggtggcac 494
            ||||||||||||||||||||
Sbjct: 2532 aaggcctggtgtggtggcac 2551
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>emb|AJ314857.1|RNO314857 Rattus norvegicus Nfkbil1 gene (partial), Atp6G, Bat1, RT1-C/E1,
           RT1-C/E2, RT1-C/E3, RT1-C/E4, RT1-C/E5, RT1-C/E7 genes
           and RT1-C/E6, RT1-C/E8, RT1-C/E9 pseudogenes
          Length = 198911

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 475 aaggcctggtgtggtggcac 494
           ||||||||||||||||||||
Sbjct: 562 aaggcctggtgtggtggcac 543
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>emb|CR382291.11| Zebrafish DNA sequence from clone CH211-245G10, complete sequence
          Length = 159807

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 154   caaagaaatacaaattatttataa 177
             |||| |||||||||||||||||||
Sbjct: 10062 caaataaatacaaattatttataa 10085
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>emb|CR352326.5| Zebrafish DNA sequence from clone CH211-105K20 in linkage group 13,
             complete sequence
          Length = 174828

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   agcgcagcggtcacaagccc 293
             ||||||||||||||||||||
Sbjct: 12411 agcgcagcggtcacaagccc 12392
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>gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete sequence
          Length = 114031

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 499   agtgcaacacagtaactatgaaatggatcagcatagaccatgatgttgtccacata 554
             ||||| ||||| |||||||| || ||||||||||  | ||| || |||||||||||
Sbjct: 78546 agtgccacacaataactatggaaaggatcagcatgcaacattatattgtccacata 78491
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>emb|BX629340.6| Zebrafish DNA sequence from clone DKEY-183O11 in linkage group 9,
             complete sequence
          Length = 172090

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 150   ttagcaaagaaatacaaattatttataa 177
             |||||||| |||||||||||||| ||||
Sbjct: 95705 ttagcaaataaatacaaattattcataa 95732
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>gb|AF387339.1| Rattus norvegicus IkBL, vacuolar ATPase NG38, Bat1, and MHC class I
            antigen (RT1.46) genes, complete cds
          Length = 36516

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 475  aaggcctggtgtggtggcac 494
            ||||||||||||||||||||
Sbjct: 2420 aaggcctggtgtggtggcac 2401
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>gb|AC106013.2| Homo sapiens chromosome 8, clone RP11-1109L18, complete sequence
          Length = 166093

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 404    ttgcttgatcattgtgacaaagctcctc 431
              |||||||||||||  |||||||||||||
Sbjct: 149398 ttgcttgatcatttggacaaagctcctc 149371
to top
>gb|AC008147.31| Homo sapiens 12 BAC RP3-405J10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 115345

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    tagcaaagaaatacaaatta 170
              ||||||||||||||||||||
Sbjct: 103028 tagcaaagaaatacaaatta 103047
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>gb|AC106743.4| Homo sapiens chromosome 16 clone RP11-116D9, complete sequence
          Length = 117710

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 469   ttctccaaggcctggtgtggtggc 492
             |||||||||||| |||||||||||
Sbjct: 42320 ttctccaaggccaggtgtggtggc 42297
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>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   aaagaaatacaaattattta 174
             ||||||||||||||||||||
Sbjct: 58274 aaagaaatacaaattattta 58255
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>gb|AC012486.9| Homo sapiens BAC clone RP11-84A12 from 2, complete sequence
          Length = 170220

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   aaagaaatacaaattattta 174
             ||||||||||||||||||||
Sbjct: 47903 aaagaaatacaaattattta 47922
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>gb|AC022816.15|AC022816 Homo sapiens chromosome 17, clone RP11-626C5, complete sequence
          Length = 95546

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 467   acttctccaaggcctggtgt 486
             ||||||||||||||||||||
Sbjct: 51931 acttctccaaggcctggtgt 51950
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>emb|AL935199.4| Zebrafish DNA sequence from clone CH211-241L3, complete sequence
          Length = 139520

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 154    caaagaaatacaaattatttataa 177
              |||| |||||||||||||||||||
Sbjct: 120402 caaataaatacaaattatttataa 120425
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>emb|BX255913.8| Zebrafish DNA sequence from clone DKEY-85N7 in linkage group 20, complete
              sequence
          Length = 248581

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 553    taattgcttgtctgtagagc 572
              ||||||||||||||||||||
Sbjct: 182199 taattgcttgtctgtagagc 182218
to top
>emb|AL954145.13| Zebrafish DNA sequence from clone CH211-284E20 in linkage group 22,
             complete sequence
          Length = 160871

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    gactacaagctgaagaactgtgtg 122
             |||||||||||| |||||||||||
Sbjct: 66102 gactacaagctgcagaactgtgtg 66079
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>emb|Z36055.1|SCYBR186W S.cerevisiae chromosome II reading frame ORF YBR186w
          Length = 2674

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 422  aaagctcctcaatgtctttg 441
            ||||||||||||||||||||
Sbjct: 1740 aaagctcctcaatgtctttg 1721
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>emb|AL132855.4|CNS01DTR Human chromosome 14 DNA sequence BAC C-2201G16 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 157910

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    ccaaggcctggtgtggtggc 492
              ||||||||||||||||||||
Sbjct: 107314 ccaaggcctggtgtggtggc 107295
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>dbj|AP005716.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1445E9, complete
              sequence
          Length = 151880

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 404    ttgcttgatcattgtgacaaagctcctc 431
              |||||||||||||  |||||||||||||
Sbjct: 110599 ttgcttgatcatttggacaaagctcctc 110572
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>emb|BX323826.6| Zebrafish DNA sequence from clone CH211-57H10 in linkage group 5,
             complete sequence
          Length = 119262

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 150   ttagcaaagaaatacaaattatttataa 177
             |||||||| |||||||||||||| ||||
Sbjct: 82603 ttagcaaataaatacaaattattcataa 82630
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>emb|BX004791.6| Mouse DNA sequence from clone RP24-233L10 on chromosome 4, complete
             sequence
          Length = 123244

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   aaggcctggtgtggtggcac 494
             ||||||||||||||||||||
Sbjct: 15447 aaggcctggtgtggtggcac 15466
to top
>gb|AC151735.3| Mus musculus BAC clone RP23-24D16 from 9, complete sequence
          Length = 201762

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   aatggcaagtcagtggtaga 220
             ||||||||||||||||||||
Sbjct: 51041 aatggcaagtcagtggtaga 51060
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>emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chromosome 11, complete
             sequence
          Length = 103129

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 470   tctccaaggcctggtgtggt 489
             ||||||||||||||||||||
Sbjct: 69534 tctccaaggcctggtgtggt 69553
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>gb|U02073.1|SCCIIMJB Saccharomyces cerevisiae alphaS288C ribosomal protein (SUP46 and
            URP1) genes, complete cds
          Length = 12800

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 422  aaagctcctcaatgtctttg 441
            ||||||||||||||||||||
Sbjct: 7327 aaagctcctcaatgtctttg 7308
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>emb|AL158800.6|CNS01RGM Human chromosome 14 DNA sequence BAC R-359N5 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163979

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    ccaaggttcaggcagcaaaa 325
              ||||||||||||||||||||
Sbjct: 132149 ccaaggttcaggcagcaaaa 132168
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>gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome 9, complete sequence
          Length = 225973

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    aatggcaagtcagtggtaga 220
              ||||||||||||||||||||
Sbjct: 173255 aatggcaagtcagtggtaga 173274
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>gb|DQ007342.1| Ginglymostoma cirratum complement component Bf/C2-B mRNA, complete
           cds
          Length = 3082

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 402 aattgcttgatcattgtgacaaag 425
           |||||||||||||| |||||||||
Sbjct: 920 aattgcttgatcatggtgacaaag 897
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>emb|AL669961.8| Mouse DNA sequence from clone RP23-43M17 on chromosome 2, complete
             sequence
          Length = 202937

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   aaggcctggtgtggtggcac 494
             ||||||||||||||||||||
Sbjct: 34859 aaggcctggtgtggtggcac 34878


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,011,452
Number of Sequences: 3902068
Number of extensions: 6011452
Number of successful extensions: 128153
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127964
Number of HSP's gapped (non-prelim): 186
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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