ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38h20 |
|---|---|
| Clone Library Name | barley_pub |
>NRX1A_CHICK (Q9DDD0) Neurexin-1-alpha (Neurexin I-alpha) (Fragment)| Length = 1363 Score = 31.2 bits (69), Expect = 2.1 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -3 Query: 206 NGKSIFCRGRGCEETCGSHPIFVKLSLYAILHLLGHFYVQLHL 78 NG +F G+ + HP VK+ +AI L GH Y+ L + Sbjct: 370 NGLILFSHGKPRHQKDAKHPQMVKVDFFAIEMLDGHLYLLLDM 412
>NRX1A_BOVIN (Q28146) Neurexin-1-alpha precursor (Neurexin I-alpha)| Length = 1530 Score = 30.8 bits (68), Expect = 2.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 206 NGKSIFCRGRGCEETCGSHPIFVKLSLYAILHLLGHFYVQLHL 78 NG +F G+ + HP +K+ +AI L GH Y+ L + Sbjct: 537 NGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDM 579
>NRX1A_RAT (Q63372) Neurexin-1-alpha precursor (Neurexin I-alpha)| Length = 1514 Score = 30.8 bits (68), Expect = 2.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 206 NGKSIFCRGRGCEETCGSHPIFVKLSLYAILHLLGHFYVQLHL 78 NG +F G+ + HP +K+ +AI L GH Y+ L + Sbjct: 521 NGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDM 563
>NRX1A_MOUSE (Q9CS84) Neurexin-1-alpha precursor (Neurexin I-alpha)| Length = 1514 Score = 30.8 bits (68), Expect = 2.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 206 NGKSIFCRGRGCEETCGSHPIFVKLSLYAILHLLGHFYVQLHL 78 NG +F G+ + HP +K+ +AI L GH Y+ L + Sbjct: 521 NGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDM 563
>GNL3_BRARE (Q6DRP2) Guanine nucleotide-binding protein-like 3| (Nucleostemin-like protein) Length = 561 Score = 30.8 bits (68), Expect = 2.7 Identities = 28/96 (29%), Positives = 41/96 (42%) Frame = -3 Query: 497 DKPDIVGDNFLQKWTQFLFAEYGTWFFVSATVWTEMDTILFVGRTMRTRRWCCKG*RKIL 318 +K D+V + L+KW FL AE T+ F S ++ RT++ +R +G +L Sbjct: 181 NKIDLVPKDNLEKWLHFLEAECPTFLFKS--------SMQLKDRTVQQKRQ-QRGTNAVL 231 Query: 317 SHMCFAVCFSCQVLMVMPHVGEKSQVLQDLLEAAPG 210 H A CF L+ Q L DL G Sbjct: 232 DHSRAASCFGKDFLL---------QTLNDLANKKEG 258
>CT1AA_BACTM (P0A383) Type-1Aa cytolytic delta-endotoxin (27 kDa cytolytic| tocin) Length = 249 Score = 30.8 bits (68), Expect = 2.7 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = +1 Query: 364 VLPTNKIVSISVQTVAETKNQVPYSANKNCVHFCKKLSPTISGLSVASLTGVTTSSF 534 + P +VS Q V +T NQV NK L +SG + LT T++F Sbjct: 91 ITPMGAVVSYVDQNVTQTNNQVSVMINKVLEVLKTVLGVALSGSVIDQLTAAVTNTF 147
>CT1AA_BACTI (P0A382) Type-1Aa cytolytic delta-endotoxin (27 kDa cytolytic| tocin) Length = 249 Score = 30.8 bits (68), Expect = 2.7 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = +1 Query: 364 VLPTNKIVSISVQTVAETKNQVPYSANKNCVHFCKKLSPTISGLSVASLTGVTTSSF 534 + P +VS Q V +T NQV NK L +SG + LT T++F Sbjct: 91 ITPMGAVVSYVDQNVTQTNNQVSVMINKVLEVLKTVLGVALSGSVIDQLTAAVTNTF 147
>NRX1A_HUMAN (Q9ULB1) Neurexin-1-alpha precursor (Neurexin I-alpha)| Length = 1477 Score = 30.8 bits (68), Expect = 2.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 206 NGKSIFCRGRGCEETCGSHPIFVKLSLYAILHLLGHFYVQLHL 78 NG +F G+ + HP +K+ +AI L GH Y+ L + Sbjct: 514 NGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDM 556
>FAM5C_RAT (Q8K1M7) Protein FAM5C precursor (BMP/retinoic acid-inducible| neural-specific protein 3) Length = 766 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -3 Query: 467 LQKWTQFLFAEYGTWFFVSATVWTEMDTILFVGRTMRTRR 348 LQ+ T+ L +YGT F +SAT+ E +FV + ++R Sbjct: 120 LQQITENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSKR 159
>FAM5C_MOUSE (Q499E0) Protein FAM5C precursor| Length = 766 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -3 Query: 467 LQKWTQFLFAEYGTWFFVSATVWTEMDTILFVGRTMRTRR 348 LQ+ T+ L +YGT F +SAT+ E +FV + ++R Sbjct: 120 LQQITENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSKR 159
>FAM5C_HUMAN (Q76B58) Protein FAM5C precursor (DBCCR1-like protein 1)| Length = 766 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -3 Query: 467 LQKWTQFLFAEYGTWFFVSATVWTEMDTILFVGRTMRTRR 348 LQ+ T+ L +YGT F +SAT+ E +FV + ++R Sbjct: 120 LQQITENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSKR 159
>FAM5B_RAT (Q8K1M8) Protein FAM5B precursor (BMP/retinoic acid-inducible| neural-specific protein 2) Length = 783 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -3 Query: 467 LQKWTQFLFAEYGTWFFVSATVWTEMDTILFVGRTMRTRR 348 LQ+ T+ L +YGT F +SAT+ E +FV + +R+ Sbjct: 131 LQQVTENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSRK 170
>FAM5B_MOUSE (Q6DFY8) Protein FAM5B precursor| Length = 783 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -3 Query: 467 LQKWTQFLFAEYGTWFFVSATVWTEMDTILFVGRTMRTRR 348 LQ+ T+ L +YGT F +SAT+ E +FV + +R+ Sbjct: 131 LQQVTENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSRK 170
>ZPR1_CAEEL (O16999) Zinc-finger protein ZPR1 homolog| Length = 455 Score = 29.3 bits (64), Expect = 7.8 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%) Frame = +3 Query: 261 MGHYHQHL--------ARETNSKAHVR*NFPSALAAPSSRSHCPTNKQNCVHFSPNCS*N 416 + HYH++L A + + V PSA AAP +S+ KQ +HF+ +C Sbjct: 196 ISHYHRNLDERKLLALADDNEEEEEVE---PSA-AAPEFKSY-EDAKQEVLHFATDCPNC 250 Query: 417 KEPSTIFSKQKLCPFLQKII 476 P+ + K PF Q +I Sbjct: 251 HGPTEVKMKPTDIPFFQTVI 270 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,414,924 Number of Sequences: 219361 Number of extensions: 1680436 Number of successful extensions: 4968 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4830 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4968 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
