| Clone Name | rbags38h08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125P05, full insert sequence Length = 1101 Score = 151 bits (76), Expect = 2e-33 Identities = 132/152 (86%) Strand = Plus / Minus Query: 195 ttcataanattcggaaatgacaccccatgagtcctnttccatgccactttnttggcgtaa 254 ||||||| ||||||||||| || |||| |||||| |||| ||||||| | |||| |||| Sbjct: 730 ttcataagattcggaaatggcatcccaaaagtcctcttccgtgccactctcttggtgtaa 671 Query: 255 ttgtcaagttcattggtgatccctgacgaatgatgagtagagatacttgattatcctcat 314 || |||||||||| |||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 670 cagttaagttcattgatgatccctgacgaatgatgactagagatacttgacaatcctcat 611 Query: 315 tggaaagggcttcanaaacaagcctttcttgc 346 ||||||| |||||| | ||||||||||||||| Sbjct: 610 tggaaagagcttcagagacaagcctttcttgc 579
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 139 bits (70), Expect = 7e-30 Identities = 109/123 (88%) Strand = Plus / Plus Query: 224 agtcctnttccatgccactttnttggcgtaattgtcaagttcattggtgatccctgacga 283 |||||| |||| ||||||||| |||| |||| || |||||||||| ||||||||||||| Sbjct: 15100038 agtcctcttccgtgccactttcttggtgtaacagttaagttcattgatgatccctgacga 15100097 Query: 284 atgatgagtagagatacttgattatcctcattggaaagggcttcanaaacaagcctttct 343 ||||||| ||||||||||||| ||||||||||||||| |||||| | |||||||||||| Sbjct: 15100098 atgatgactagagatacttgacaatcctcattggaaagagcttcagagacaagcctttct 15100157 Query: 344 tgc 346 ||| Sbjct: 15100158 tgc 15100160
>dbj|AP005426.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0668D04 Length = 148848 Score = 139 bits (70), Expect = 7e-30 Identities = 109/123 (88%) Strand = Plus / Plus Query: 224 agtcctnttccatgccactttnttggcgtaattgtcaagttcattggtgatccctgacga 283 |||||| |||| ||||||||| |||| |||| || |||||||||| ||||||||||||| Sbjct: 91681 agtcctcttccgtgccactttcttggtgtaacagttaagttcattgatgatccctgacga 91740 Query: 284 atgatgagtagagatacttgattatcctcattggaaagggcttcanaaacaagcctttct 343 ||||||| ||||||||||||| ||||||||||||||| |||||| | |||||||||||| Sbjct: 91741 atgatgactagagatacttgacaatcctcattggaaagagcttcagagacaagcctttct 91800 Query: 344 tgc 346 ||| Sbjct: 91801 tgc 91803
>gb|AY105558.1| Zea mays PCO126823 mRNA sequence Length = 804 Score = 103 bits (52), Expect = 4e-19 Identities = 107/126 (84%) Strand = Plus / Minus Query: 203 attcggaaatgacaccccatgagtcctnttccatgccactttnttggcgtaattgtcaag 262 ||||||||||| ||||||| |||||| ||||||||||||| |||| |||||||| || Sbjct: 799 attcggaaatggcaccccagaagtcctcttccatgccacttccttggtgtaattgttaaa 740 Query: 263 ttcattggtgatccctgacgaatgatgagtagagatacttgattatcctcattggaaagg 322 |||| ||||||||| |||||||||| || |||||||||| | |||||||||||||| Sbjct: 739 ttcaccactgatccctggcgaatgatgactaaagatacttgactgtcctcattggaaaga 680 Query: 323 gcttca 328 |||||| Sbjct: 679 gcttca 674
>gb|AC009206.21| Drosophila melanogaster clone BACR15A11, complete sequence Length = 195221 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 aagcacaccattcttcaattgaatat 185 |||||||||| ||||||||||||||| Sbjct: 51166 aagcacaccactcttcaattgaatat 51191
>gb|AF114160.2| Drosophila melanogaster adherin Nipped-B (Nipped-B) mRNA, complete cds Length = 6583 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 aagcacaccattcttcaattgaatat 185 |||||||||| ||||||||||||||| Sbjct: 1075 aagcacaccactcttcaattgaatat 1100
>ref|NM_001015455.1| Drosophila melanogaster CG17704-PF.3 (CG17704), mRNA Length = 7851 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 aagcacaccattcttcaattgaatat 185 |||||||||| ||||||||||||||| Sbjct: 1154 aagcacaccactcttcaattgaatat 1179
>ref|NM_001015454.1| Drosophila melanogaster CG17704-PE.3 (CG17704), mRNA Length = 7828 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 aagcacaccattcttcaattgaatat 185 |||||||||| ||||||||||||||| Sbjct: 1131 aagcacaccactcttcaattgaatat 1156
>gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 of 73 of the complete sequence Length = 585533 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 160 aagcacaccattcttcaattgaatat 185 |||||||||| ||||||||||||||| Sbjct: 234741 aagcacaccactcttcaattgaatat 234716
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 40.1 bits (20), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 8 ggcttgcaaacanggcacctaca 30 |||||||||||| |||||||||| Sbjct: 1709793 ggcttgcaaacatggcacctaca 1709771 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,963,021 Number of Sequences: 3902068 Number of extensions: 1963021 Number of successful extensions: 30432 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30408 Number of HSP's gapped (non-prelim): 23 length of query: 346 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 324 effective length of database: 17,147,199,772 effective search space: 5555692726128 effective search space used: 5555692726128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)