ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK072629.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 139 7e-30
3dbj|AP005426.3| Oryza sativa (japonica cultivar-group) genomic D... 139 7e-30
4gb|AY105558.1| Zea mays PCO126823 mRNA sequence 103 4e-19
5gb|AC009206.21| Drosophila melanogaster clone BACR15A11, complet... 44 0.29
6gb|AF114160.2| Drosophila melanogaster adherin Nipped-B (Nipped-... 44 0.29
7ref|NM_001015455.1| Drosophila melanogaster CG17704-PF.3 (CG1770... 44 0.29
8ref|NM_001015454.1| Drosophila melanogaster CG17704-PE.3 (CG1770... 44 0.29
9gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 ... 44 0.29
10dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 40 4.6

>dbj|AK072629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125P05, full
           insert sequence
          Length = 1101

 Score =  151 bits (76), Expect = 2e-33
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                       
Query: 195 ttcataanattcggaaatgacaccccatgagtcctnttccatgccactttnttggcgtaa 254
           ||||||| ||||||||||| || ||||  |||||| |||| ||||||| | |||| ||||
Sbjct: 730 ttcataagattcggaaatggcatcccaaaagtcctcttccgtgccactctcttggtgtaa 671

                                                                       
Query: 255 ttgtcaagttcattggtgatccctgacgaatgatgagtagagatacttgattatcctcat 314
             || |||||||||| |||||||||||||||||||| |||||||||||||  ||||||||
Sbjct: 670 cagttaagttcattgatgatccctgacgaatgatgactagagatacttgacaatcctcat 611

                                           
Query: 315 tggaaagggcttcanaaacaagcctttcttgc 346
           ||||||| |||||| | |||||||||||||||
Sbjct: 610 tggaaagagcttcagagacaagcctttcttgc 579



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  139 bits (70), Expect = 7e-30
 Identities = 109/123 (88%)
 Strand = Plus / Plus

                                                                            
Query: 224      agtcctnttccatgccactttnttggcgtaattgtcaagttcattggtgatccctgacga 283
                |||||| |||| ||||||||| |||| ||||  || |||||||||| |||||||||||||
Sbjct: 15100038 agtcctcttccgtgccactttcttggtgtaacagttaagttcattgatgatccctgacga 15100097

                                                                            
Query: 284      atgatgagtagagatacttgattatcctcattggaaagggcttcanaaacaagcctttct 343
                ||||||| |||||||||||||  ||||||||||||||| |||||| | ||||||||||||
Sbjct: 15100098 atgatgactagagatacttgacaatcctcattggaaagagcttcagagacaagcctttct 15100157

                   
Query: 344      tgc 346
                |||
Sbjct: 15100158 tgc 15100160



to top

>dbj|AP005426.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0668D04
          Length = 148848

 Score =  139 bits (70), Expect = 7e-30
 Identities = 109/123 (88%)
 Strand = Plus / Plus

                                                                         
Query: 224   agtcctnttccatgccactttnttggcgtaattgtcaagttcattggtgatccctgacga 283
             |||||| |||| ||||||||| |||| ||||  || |||||||||| |||||||||||||
Sbjct: 91681 agtcctcttccgtgccactttcttggtgtaacagttaagttcattgatgatccctgacga 91740

                                                                         
Query: 284   atgatgagtagagatacttgattatcctcattggaaagggcttcanaaacaagcctttct 343
             ||||||| |||||||||||||  ||||||||||||||| |||||| | ||||||||||||
Sbjct: 91741 atgatgactagagatacttgacaatcctcattggaaagagcttcagagacaagcctttct 91800

                
Query: 344   tgc 346
             |||
Sbjct: 91801 tgc 91803



to top

>gb|AY105558.1| Zea mays PCO126823 mRNA sequence
          Length = 804

 Score =  103 bits (52), Expect = 4e-19
 Identities = 107/126 (84%)
 Strand = Plus / Minus

                                                                       
Query: 203 attcggaaatgacaccccatgagtcctnttccatgccactttnttggcgtaattgtcaag 262
           ||||||||||| |||||||  |||||| |||||||||||||  |||| |||||||| || 
Sbjct: 799 attcggaaatggcaccccagaagtcctcttccatgccacttccttggtgtaattgttaaa 740

                                                                       
Query: 263 ttcattggtgatccctgacgaatgatgagtagagatacttgattatcctcattggaaagg 322
           ||||    ||||||||| |||||||||| || |||||||||| | |||||||||||||| 
Sbjct: 739 ttcaccactgatccctggcgaatgatgactaaagatacttgactgtcctcattggaaaga 680

                 
Query: 323 gcttca 328
           ||||||
Sbjct: 679 gcttca 674



to top

>gb|AC009206.21| Drosophila melanogaster clone BACR15A11, complete sequence
          Length = 195221

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 160   aagcacaccattcttcaattgaatat 185
             |||||||||| |||||||||||||||
Sbjct: 51166 aagcacaccactcttcaattgaatat 51191



to top

>gb|AF114160.2| Drosophila melanogaster adherin Nipped-B (Nipped-B) mRNA, complete
            cds
          Length = 6583

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 160  aagcacaccattcttcaattgaatat 185
            |||||||||| |||||||||||||||
Sbjct: 1075 aagcacaccactcttcaattgaatat 1100



to top

>ref|NM_001015455.1| Drosophila melanogaster CG17704-PF.3 (CG17704), mRNA
          Length = 7851

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 160  aagcacaccattcttcaattgaatat 185
            |||||||||| |||||||||||||||
Sbjct: 1154 aagcacaccactcttcaattgaatat 1179



to top

>ref|NM_001015454.1| Drosophila melanogaster CG17704-PE.3 (CG17704), mRNA
          Length = 7828

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 160  aagcacaccattcttcaattgaatat 185
            |||||||||| |||||||||||||||
Sbjct: 1131 aagcacaccactcttcaattgaatat 1156



to top

>gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 of 73 of the complete
              sequence
          Length = 585533

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 160    aagcacaccattcttcaattgaatat 185
              |||||||||| |||||||||||||||
Sbjct: 234741 aagcacaccactcttcaattgaatat 234716



to top

>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 8       ggcttgcaaacanggcacctaca 30
               |||||||||||| ||||||||||
Sbjct: 1709793 ggcttgcaaacatggcacctaca 1709771


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,963,021
Number of Sequences: 3902068
Number of extensions: 1963021
Number of successful extensions: 30432
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30408
Number of HSP's gapped (non-prelim): 23
length of query: 346
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 324
effective length of database: 17,147,199,772
effective search space: 5555692726128
effective search space used: 5555692726128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top