ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009202.1| Triticum aestivum clone wle1n.pk0018.b10:fis, ful... 694 0.0
2dbj|AK067898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 398 e-107
3dbj|AK065701.1| Oryza sativa (japonica cultivar-group) cDNA clon... 398 e-107
4gb|AY103789.1| Zea mays PCO071948 mRNA sequence 349 8e-93
5gb|AY108861.1| Zea mays PCO071947 mRNA sequence 321 2e-84
6gb|AY112654.1| Zea mays CL15_-1 mRNA sequence 262 2e-66
7gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome... 178 2e-41
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 178 2e-41
9gb|AY570531.1| Alyssum lesbiacum phosphoribosylformimino-5-amino... 103 8e-19
10ref|NM_129181.2| Arabidopsis thaliana BBM II II; 1-(5-phosphorib... 92 3e-15
11gb|AY140058.1| Arabidopsis thaliana phosphoribosylformimino-5-am... 92 3e-15
12gb|AY089074.1| Arabidopsis thaliana clone 2813 mRNA, complete se... 92 3e-15
13gb|BT002552.1| Arabidopsis thaliana phosphoribosylformimino-5-am... 92 3e-15
14dbj|AB006139.1| Arabidopsis thaliana mRNA for phosphoribosylform... 92 3e-15
15dbj|AK118659.1| Arabidopsis thaliana At2g36230 mRNA for putative... 92 3e-15
16gb|AC006921.6| Arabidopsis thaliana chromosome 2 clone F2H17 map... 58 4e-05
17dbj|AB195273.1| Arabidopsis thaliana gene for BBMII isomerase, c... 58 4e-05
18dbj|AB008929.1| Arabidopsis thaliana gene for N'-5'-phosphoribos... 58 4e-05
19gb|AC111125.11| Mus musculus chromosome 9, clone RP23-331P8, com... 46 0.17
20emb|AL160168.11| Human DNA sequence from clone RP11-394O9 on chr... 46 0.17
21gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome... 46 0.17
22gb|AC102038.9| Mus musculus chromosome 19, clone RP23-248G20, co... 44 0.66
23gb|AC159286.3| Mus musculus BAC clone RP23-314E22 from chromosom... 42 2.6
24gb|AC121257.6| Mus musculus chromosome 14, clone RP24-202E4, com... 42 2.6
25emb|AL591499.7| Human DNA sequence from clone RP11-15G8 on chrom... 42 2.6
26emb|AL359314.14| Human DNA sequence from clone RP11-108L4 on chr... 42 2.6
27gb|DQ099564.1| Taenia crassiceps isolate KAP450 5.8S ribosomal R... 42 2.6
28gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 42 2.6

>gb|BT009202.1| Triticum aestivum clone wle1n.pk0018.b10:fis, full insert mRNA
           sequence
          Length = 1210

 Score =  694 bits (350), Expect = 0.0
 Identities = 423/446 (94%), Gaps = 1/446 (0%)
 Strand = Plus / Minus

                                                                       
Query: 293 atctgatttcttcacggctggctaaccaggttttgctccttgtgccaaccgacaacatca 352
           ||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 996 atctgatttcttcaccgtttgctaaccaggttttgctccttgtgccaacggacaacatca 937

                                                                       
Query: 353 tcgtagggcaaatctcctccgaatatgtctagggcgctcccaacagtaacatcaactcga 412
           ||||| ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||| 
Sbjct: 936 tcgtacggcaaatctcccccaaatatgtctagggcgctcccgacagtgacatcgactcgg 877

                                                                       
Query: 413 ctcttgcctgctttcttgatcctctccaggtcgtccatcgttgacacacccccagcgtat 472
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 876 ctcttgcctgctttcttgatcctctccaggtcgtccatcgttgacacgcccccggcgtat 817

                                                                       
Query: 473 gttgtcgggataggtgaatgacttcccaatagttccacgagttcctcatcaattcctaac 532
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 816 gttgtcgggataggtgaatgacttcccagtagctccacgagttcctcatcaattcctaac 757

                                                                       
Query: 533 cttttgccctccacatcaactccatgaaccaaaaactcatctgcatattcagcaagacgt 592
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 756 cttttgccctccacatcaactccatgaaccaaaaactcatctgcatatgcagcaagacgt 697

                                                                       
Query: 593 tctaatgttggcccatccacaaagacatcgctgaacttctgccatctgtcagtcacaatg 652
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 696 tctaatgttggcccatccacaaagacatcactgaacttctgccatctgtcagtcacaatg 637

                                                                       
Query: 653 gcatatctgccatccttctttcgacaactaaggtccaaaataagccttcgtttcccaaca 712
           ||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||
Sbjct: 636 gcatatctgccatccttttttcgacaactcaggtccaaaataagcctttctttcccaaca 577

                                     
Query: 713 agctcaacaaggttgcgtcagccttt 738
           ||||| |||| |||||||||||||||
Sbjct: 576 agctcgacaa-gttgcgtcagccttt 552



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 76/88 (86%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                        
Query: 57   tacaatacaaaacagaatgtaaagcacggtatctaaacaccgagtactcctctacaacgc 116
            ||||||||||| |||||||||||| || |||||| || |||||||  |||||||| || |
Sbjct: 1166 tacaatacaaa-cagaatgtaaagtacagtatctgaataccgagtggtcctctaccacac 1108

                                        
Query: 117  cga-cttgacacctccgcttcagctttg 143
            |||  |||||||||| ||||||||||||
Sbjct: 1107 cgaggttgacacctctgcttcagctttg 1080



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>dbj|AK067898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124K03, full
           insert sequence
          Length = 829

 Score =  398 bits (201), Expect = e-107
 Identities = 351/401 (87%)
 Strand = Plus / Minus

                                                                       
Query: 311 tggctaaccaggttttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcct 370
           ||||||||||  ||||| ||||||||||||   || || || | ||||||||||||||||
Sbjct: 467 tggctaaccatattttgttccttgtgccaaagaacgacgtccttgtagggcaaatctcct 408

                                                                       
Query: 371 ccgaatatgtctagggcgctcccaacagtaacatcaactcgactcttgcctgctttcttg 430
           |||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| | || 
Sbjct: 407 ccgaatatatcaagggcactcccaaccgtaacatcaactcgactgttgcctgctcttttt 348

                                                                       
Query: 431 atcctctccaggtcgtccatcgttgacacacccccagcgtatgttgtcgggataggtgaa 490
           |||||||| ||||| ||||| || |||||||||||||| || |||   || |||||||||
Sbjct: 347 atcctctctaggtcatccattgtagacacacccccagcataagttacaggtataggtgaa 288

                                                                       
Query: 491 tgacttcccaatagttccacgagttcctcatcaattcctaaccttttgccctccacatca 550
           | || |||||||||||| || ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 287 taacgtcccaatagttcgacaagttcttcatcaattcctaaccttttcccctccacatca 228

                                                                       
Query: 551 actccatgaaccaaaaactcatctgcatattcagcaagacgttctaatgttggcccatcc 610
           || |||||||||||||| |||||||||||  |||||||| ||| |||||||||| |||||
Sbjct: 227 acaccatgaaccaaaaattcatctgcataggcagcaagatgttttaatgttggctcatcc 168

                                                                       
Query: 611 acaaagacatcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttc 670
           ||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| 
Sbjct: 167 acaaagacatcactgaatttctgccatctgtcagtcacgatggcatatcttccatccttt 108

                                                    
Query: 671 tttcgacaactaaggtccaaaataagccttcgtttcccaac 711
           |||| ||||||||||||||||| ||||||  ||||||||||
Sbjct: 107 tttctacaactaaggtccaaaacaagcctatgtttcccaac 67



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>dbj|AK065701.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037E09, full
           insert sequence
          Length = 1310

 Score =  398 bits (201), Expect = e-107
 Identities = 351/401 (87%)
 Strand = Plus / Minus

                                                                       
Query: 311 tggctaaccaggttttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcct 370
           ||||||||||  ||||| ||||||||||||   || || || | ||||||||||||||||
Sbjct: 959 tggctaaccatattttgttccttgtgccaaagaacgacgtccttgtagggcaaatctcct 900

                                                                       
Query: 371 ccgaatatgtctagggcgctcccaacagtaacatcaactcgactcttgcctgctttcttg 430
           |||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| | || 
Sbjct: 899 ccgaatatatcaagggcactcccaaccgtaacatcaactcgactgttgcctgctcttttt 840

                                                                       
Query: 431 atcctctccaggtcgtccatcgttgacacacccccagcgtatgttgtcgggataggtgaa 490
           |||||||| ||||| ||||| || |||||||||||||| || |||   || |||||||||
Sbjct: 839 atcctctctaggtcatccattgtagacacacccccagcataagttacaggtataggtgaa 780

                                                                       
Query: 491 tgacttcccaatagttccacgagttcctcatcaattcctaaccttttgccctccacatca 550
           | || |||||||||||| || ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 779 taacgtcccaatagttcgacaagttcttcatcaattcctaaccttttcccctccacatca 720

                                                                       
Query: 551 actccatgaaccaaaaactcatctgcatattcagcaagacgttctaatgttggcccatcc 610
           || |||||||||||||| |||||||||||  |||||||| ||| |||||||||| |||||
Sbjct: 719 acaccatgaaccaaaaattcatctgcataggcagcaagatgttttaatgttggctcatcc 660

                                                                       
Query: 611 acaaagacatcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttc 670
           ||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| 
Sbjct: 659 acaaagacatcactgaatttctgccatctgtcagtcacgatggcatatcttccatccttt 600

                                                    
Query: 671 tttcgacaactaaggtccaaaataagccttcgtttcccaac 711
           |||| ||||||||||||||||| ||||||  ||||||||||
Sbjct: 599 tttctacaactaaggtccaaaacaagcctatgtttcccaac 559



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>gb|AY103789.1| Zea mays PCO071948 mRNA sequence
          Length = 1544

 Score =  349 bits (176), Expect = 8e-93
 Identities = 344/400 (86%)
 Strand = Plus / Minus

                                                                        
Query: 324  tttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcctccgaatatgtcta 383
            |||||| ||||||||||  ||||||||| | |||||| ||||||||||| ||||| ||||
Sbjct: 1314 tttgcttcttgtgccaaaggacaacatctttgtagggtaaatctcctccaaatatatcta 1255

                                                                        
Query: 384  gggcgctcccaacagtaacatcaactcgactcttgcctgctttcttgatcctctccaggt 443
            | || ||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||
Sbjct: 1254 gagcactcccaacagttacatctactcgacttttgcctgccttctttatcctctctaggt 1195

                                                                        
Query: 444  cgtccatcgttgacacacccccagcgtatgttgtcgggataggtgaatgacttcccaata 503
            | ||||| ||||||||||||||||| || |||   ||||| |||||||||   |||||||
Sbjct: 1194 catccattgttgacacacccccagcataagttactgggattggtgaatgatgccccaata 1135

                                                                        
Query: 504  gttccacgagttcctcatcaattcctaaccttttgccctccacatcaactccatgaacca 563
            ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 1134 gttccacaagttcctcatcaatccctaaccttttgccctccacatcaacaccatgaacca 1075

                                                                        
Query: 564  aaaactcatctgcatattcagcaagacgttctaatgttggcccatccacaaagacatcgc 623
            |||||||||||||  |  |||| |||  ||||||||  ||  |||||||||| ||||| |
Sbjct: 1074 aaaactcatctgcgaaggcagcgagatattctaatgccggttcatccacaaacacatcac 1015

                                                                        
Query: 624  tgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaactaa 683
            ||||||||||||| |||||||| ||||| | ||||||||||||||| |||||||| ||||
Sbjct: 1014 tgaacttctgccacctgtcagttacaatagtatatctgccatccttttttcgacagctaa 955

                                                    
Query: 684  ggtccaaaataagccttcgtttcccaacaagctcaacaag 723
            ||||||  | ||||||  |||||||||| ||||| |||||
Sbjct: 954  ggtccagcacaagcctctgtttcccaaccagctcgacaag 915



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>gb|AY108861.1| Zea mays PCO071947 mRNA sequence
          Length = 817

 Score =  321 bits (162), Expect = 2e-84
 Identities = 315/366 (86%)
 Strand = Plus / Minus

                                                                       
Query: 324 tttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcctccgaatatgtcta 383
           |||||| | ||||||||  ||||||||| | ||| |||||||||||||| ||||| ||||
Sbjct: 371 tttgcttcctgtgccaaaggacaacatctttgtaaggcaaatctcctccaaatatatcta 312

                                                                       
Query: 384 gggcgctcccaacagtaacatcaactcgactcttgcctgctttcttgatcctctccaggt 443
           | || |||||||  || ||||| || ||||| |||||||||||||| |||||||| ||||
Sbjct: 311 gagcactcccaattgttacatctacccgacttttgcctgctttctttatcctctctaggt 252

                                                                       
Query: 444 cgtccatcgttgacacacccccagcgtatgttgtcgggataggtgaatgacttcccaata 503
           ||||||| ||||||||||||||||| || ||    ||||| |||||||     |||||||
Sbjct: 251 cgtccattgttgacacacccccagcataagtgactgggattggtgaatagtgccccaata 192

                                                                       
Query: 504 gttccacgagttcctcatcaattcctaaccttttgccctccacatcaactccatgaacca 563
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 191 gttccacaagttcctcatcaattcctaaccttttgccctccacatcaacaccatgaacca 132

                                                                       
Query: 564 aaaactcatctgcatattcagcaagacgttctaatgttggcccatccacaaagacatcgc 623
           |||||||||||||| |  |||| |||  ||||||||||||  |||||||||| ||||| |
Sbjct: 131 aaaactcatctgcaaaggcagcgagatattctaatgttggttcatccacaaacacatcac 72

                                                                       
Query: 624 tgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaactaa 683
           ||||||| ||||| |||||||| ||||||| ||||| ||||||||| ||||||||||| |
Sbjct: 71  tgaacttttgccacctgtcagttacaatggtatatcggccatccttttttcgacaactga 12

                 
Query: 684 ggtcca 689
           ||||||
Sbjct: 11  ggtcca 6



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>gb|AY112654.1| Zea mays CL15_-1 mRNA sequence
          Length = 1089

 Score =  262 bits (132), Expect = 2e-66
 Identities = 329/400 (82%)
 Strand = Plus / Minus

                                                                       
Query: 324 tttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcctccgaatatgtcta 383
           |||||| ||||||||||  ||||||||| | |||||| ||||||||||| ||||| ||||
Sbjct: 663 tttgcttcttgtgccaaaggacaacatctttgtagggtaaatctcctccaaatatatcta 604

                                                                       
Query: 384 gggcgctcccaacagtaacatcaactcgactcttgcctgctttcttgatcctctccaggt 443
           | || ||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||
Sbjct: 603 gagcactcccaacagttacatctactcgacttttgcctgccttctttatcctctctaggt 544

                                                                       
Query: 444 cgtccatcgttgacacacccccagcgtatgttgtcgggataggtgaatgacttcccaata 503
           | ||||| |||||||||     ||| || |||   ||||| |||||||||   |||||||
Sbjct: 543 catccattgttgacacannnnnagcataagttactgggattggtgaatgatgccccaata 484

                                                                       
Query: 504 gttccacgagttcctcatcaattcctaaccttttgccctccacatcaactccatgaacca 563
           ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| 
Sbjct: 483 gttccacaagttcctcatcaatccctaaccttttgccctccacatcaacaccatgaaccn 424

                                                                       
Query: 564 aaaactcatctgcatattcagcaagacgttctaatgttggcccatccacaaagacatcgc 623
               |||||||||  |  |||| |||  ||||||||  ||  |||||||||| ||||| |
Sbjct: 423 nnnnctcatctgcgaaggcagcgagatattctaatgccggttcatccacaaacacatcac 364

                                                                       
Query: 624 tgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaactaa 683
           ||||||||||||| |||||||| ||||| | |||||||||||||      ||||| ||||
Sbjct: 363 tgaacttctgccacctgtcagttacaatagtatatctgccatccnnnnnncgacagctaa 304

                                                   
Query: 684 ggtccaaaataagccttcgtttcccaacaagctcaacaag 723
           ||||||  | ||||||  |||||||||| ||||| |||||
Sbjct: 303 ggtccagcacaagcctctgtttcccaaccagctcgacaag 264



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>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0035J16, complete sequence
          Length = 170233

 Score =  178 bits (90), Expect = 2e-41
 Identities = 126/138 (91%)
 Strand = Plus / Minus

                                                                         
Query: 531   accttttgccctccacatcaactccatgaaccaaaaactcatctgcatattcagcaagac 590
             ||||||| |||||||||||||| |||||||||||||| |||||||||||  |||||||| 
Sbjct: 54734 accttttcccctccacatcaacaccatgaaccaaaaattcatctgcataggcagcaagat 54675

                                                                         
Query: 591   gttctaatgttggcccatccacaaagacatcgctgaacttctgccatctgtcagtcacaa 650
             ||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 54674 gttttaatgttggctcatccacaaagacatcactgaatttctgccatctgtcagtcacga 54615

                               
Query: 651   tggcatatctgccatcct 668
             |||||||||| |||||||
Sbjct: 54614 tggcatatcttccatcct 54597



 Score =  139 bits (70), Expect = 2e-29
 Identities = 136/158 (86%)
 Strand = Plus / Minus

                                                                         
Query: 311   tggctaaccaggttttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcct 370
             ||||||||||  ||||| ||||||||||||   || || || | ||||||||||||||||
Sbjct: 56024 tggctaaccatattttgttccttgtgccaaagaacgacgtccttgtagggcaaatctcct 55965

                                                                         
Query: 371   ccgaatatgtctagggcgctcccaacagtaacatcaactcgactcttgcctgctttcttg 430
             |||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| | || 
Sbjct: 55964 ccgaatatatcaagggcactcccaaccgtaacatcaactcgactgttgcctgctcttttt 55905

                                                   
Query: 431   atcctctccaggtcgtccatcgttgacacacccccagc 468
             |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 55904 atcctctctaggtcatccattgtagacacacccccagc 55867



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 484   aggtgaatgacttcccaatagttccacgagttcctcatcaattcctaacct 534
             |||||||| || |||||||||||| || ||||| |||||||||||||||||
Sbjct: 55244 aggtgaataacgtcccaatagttcgacaagttcttcatcaattcctaacct 55194



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 666   ccttctttcgacaactaaggtccaaaataagccttcgtttcccaac 711
             |||| |||| ||||||||||||||||| ||||||  ||||||||||
Sbjct: 53792 ccttttttctacaactaaggtccaaaacaagcctatgtttcccaac 53747



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  178 bits (90), Expect = 2e-41
 Identities = 126/138 (91%)
 Strand = Plus / Minus

                                                                            
Query: 531      accttttgccctccacatcaactccatgaaccaaaaactcatctgcatattcagcaagac 590
                ||||||| |||||||||||||| |||||||||||||| |||||||||||  |||||||| 
Sbjct: 19351385 accttttcccctccacatcaacaccatgaaccaaaaattcatctgcataggcagcaagat 19351326

                                                                            
Query: 591      gttctaatgttggcccatccacaaagacatcgctgaacttctgccatctgtcagtcacaa 650
                ||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 19351325 gttttaatgttggctcatccacaaagacatcactgaatttctgccatctgtcagtcacga 19351266

                                  
Query: 651      tggcatatctgccatcct 668
                |||||||||| |||||||
Sbjct: 19351265 tggcatatcttccatcct 19351248



 Score =  139 bits (70), Expect = 2e-29
 Identities = 136/158 (86%)
 Strand = Plus / Minus

                                                                            
Query: 311      tggctaaccaggttttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcct 370
                ||||||||||  ||||| ||||||||||||   || || || | ||||||||||||||||
Sbjct: 19352675 tggctaaccatattttgttccttgtgccaaagaacgacgtccttgtagggcaaatctcct 19352616

                                                                            
Query: 371      ccgaatatgtctagggcgctcccaacagtaacatcaactcgactcttgcctgctttcttg 430
                |||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| | || 
Sbjct: 19352615 ccgaatatatcaagggcactcccaaccgtaacatcaactcgactgttgcctgctcttttt 19352556

                                                      
Query: 431      atcctctccaggtcgtccatcgttgacacacccccagc 468
                |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 19352555 atcctctctaggtcatccattgtagacacacccccagc 19352518



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                   
Query: 484      aggtgaatgacttcccaatagttccacgagttcctcatcaattcctaacct 534
                |||||||| || |||||||||||| || ||||| |||||||||||||||||
Sbjct: 19351895 aggtgaataacgtcccaatagttcgacaagttcttcatcaattcctaacct 19351845



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                              
Query: 666      ccttctttcgacaactaaggtccaaaataagccttcgtttcccaac 711
                |||| |||| ||||||||||||||||| ||||||  ||||||||||
Sbjct: 19350443 ccttttttctacaactaaggtccaaaacaagcctatgtttcccaac 19350398



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>gb|AY570531.1| Alyssum lesbiacum phosphoribosylformimino-5-aminoimidazole
           carboxamide ribonucleotide isomerase (ProFARI) mRNA,
           partial cds
          Length = 394

 Score =  103 bits (52), Expect = 8e-19
 Identities = 88/100 (88%)
 Strand = Plus / Minus

                                                                       
Query: 614 aagacatcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttcttt 673
           |||||||||||||||||||||||||| ||||| || || |||||||| ||||||||||||
Sbjct: 351 aagacatcgctgaacttctgccatctatcagtaacgattgcatatcttccatccttcttt 292

                                                   
Query: 674 cgacaactaaggtccaaaataagccttcgtttcccaacaa 713
           |  || ||||||||||| || || ||| ||||||||||||
Sbjct: 291 ctgcagctaaggtccaatatcagtctttgtttcccaacaa 252



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>ref|NM_129181.2| Arabidopsis thaliana BBM II II;
           1-(5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]imidazole-4-
           carboxamide isomerase AT2G36230 (BBM II II) mRNA,
           complete cds
          Length = 1122

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                       
Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679
           |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||  || 
Sbjct: 634 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 575

                                             
Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713
           ||||||||||| || || ||| ||||||||||||
Sbjct: 574 ctaaggtccaatatcagtctttgtttcccaacaa 541



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>gb|AY140058.1| Arabidopsis thaliana phosphoribosylformimino-5-aminoimidazole
           carboxamide ribotide isomerase (At2g36230) mRNA,
           complete cds
          Length = 1112

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                       
Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679
           |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||  || 
Sbjct: 630 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 571

                                             
Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713
           ||||||||||| || || ||| ||||||||||||
Sbjct: 570 ctaaggtccaatatcagtctttgtttcccaacaa 537



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>gb|AY089074.1| Arabidopsis thaliana clone 2813 mRNA, complete sequence
          Length = 1114

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                       
Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679
           |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||  || 
Sbjct: 625 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 566

                                             
Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713
           ||||||||||| || || ||| ||||||||||||
Sbjct: 565 ctaaggtccaatatcagtctttgtttcccaacaa 532



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>gb|BT002552.1| Arabidopsis thaliana phosphoribosylformimino-5-aminoimidazole
           carboxamide ribotide isomerase (At2g36230) mRNA,
           complete cds
          Length = 965

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                       
Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679
           |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||  || 
Sbjct: 605 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 546

                                             
Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713
           ||||||||||| || || ||| ||||||||||||
Sbjct: 545 ctaaggtccaatatcagtctttgtttcccaacaa 512



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>dbj|AB006139.1| Arabidopsis thaliana mRNA for
           phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase, complete cds
          Length = 1094

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                       
Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679
           |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||  || 
Sbjct: 634 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 575

                                             
Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713
           ||||||||||| || || ||| ||||||||||||
Sbjct: 574 ctaaggtccaatatcagtctttgtttcccaacaa 541



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>dbj|AK118659.1| Arabidopsis thaliana At2g36230 mRNA for putative
           phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase, complete cds, clone: RAFL19-93-D13
          Length = 1033

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                       
Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679
           |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||  || 
Sbjct: 630 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 571

                                             
Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713
           ||||||||||| || || ||| ||||||||||||
Sbjct: 570 ctaaggtccaatatcagtctttgtttcccaacaa 537



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>gb|AC006921.6| Arabidopsis thaliana chromosome 2 clone F2H17 map g6825, complete
             sequence
          Length = 91354

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                              
Query: 620   tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatcct 668
             |||||||||||||||||||| ||||| ||||| || ||||| |||||||
Sbjct: 69163 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatcct 69115



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>dbj|AB195273.1| Arabidopsis thaliana gene for BBMII isomerase, complete cds
          Length = 1693

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatcct 668
           |||||||||||||||||||| ||||| ||||| || ||||| |||||||
Sbjct: 985 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatcct 937



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>dbj|AB008929.1| Arabidopsis thaliana gene for
            N'-5'-phosphoribosyl-formimino-5-aminoimidazole-4-
            carboxamide ribonucleotide isomerase, complete cds
          Length = 2282

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 620  tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatcct 668
            |||||||||||||||||||| ||||| ||||| || ||||| |||||||
Sbjct: 1253 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatcct 1205



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>gb|AC111125.11| Mus musculus chromosome 9, clone RP23-331P8, complete sequence
          Length = 260036

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 200    cctgacctgacctgacctcgcctgaac 226
              |||||||||||||||||| ||||||||
Sbjct: 234831 cctgacctgacctgacctggcctgaac 234857



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>emb|AL160168.11| Human DNA sequence from clone RP11-394O9 on chromosome 9, complete
             sequence
          Length = 151202

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 481   gataggtgaatgacttcccaata 503
             |||||||||||||||||||||||
Sbjct: 26476 gataggtgaatgacttcccaata 26498



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>gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome 9, complete sequence
          Length = 216124

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 200   cctgacctgacctgacctcgcctgaac 226
             |||||||||||||||||| ||||||||
Sbjct: 62087 cctgacctgacctgacctggcctgaac 62113



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>gb|AC102038.9| Mus musculus chromosome 19, clone RP23-248G20, complete sequence
          Length = 159945

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 199    acctgacctgacctgacctcgcctga 224
              ||||||||||||||||||| ||||||
Sbjct: 137792 acctgacctgacctgacctggcctga 137817



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>gb|AC159286.3| Mus musculus BAC clone RP23-314E22 from chromosome 14, complete
             sequence
          Length = 210984

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 236   aggtcaaatgaggattacaga 256
             |||||||||||||||||||||
Sbjct: 69697 aggtcaaatgaggattacaga 69677



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>gb|AC121257.6| Mus musculus chromosome 14, clone RP24-202E4, complete sequence
          Length = 188883

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 236    aggtcaaatgaggattacaga 256
              |||||||||||||||||||||
Sbjct: 175256 aggtcaaatgaggattacaga 175276



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>emb|AL591499.7| Human DNA sequence from clone RP11-15G8 on chromosome 6 Contains the 5'
              end of a novel gene (KIAA1116), a stathmin-like 2
              (Superiorcervical ganglia, neural specific 10 superior
              cervical ganglia, neural specific 10 neuronal
              growth-associated protein (silencer) (STMN2) (SCG10, SGC10,
              SCGN10) pseudogene and two CpG islands, complete sequence
          Length = 111864

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 559    aaccaaaaactcatctgcata 579
              |||||||||||||||||||||
Sbjct: 104622 aaccaaaaactcatctgcata 104602



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>emb|AL359314.14| Human DNA sequence from clone RP11-108L4 on chromosome 9 Contains the
             5' end of the KIAA0367 gene and the 5' end of the PCA3
             gene for prostate cancer antigen 3 (DD3), complete
             sequence
          Length = 128480

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 625   gaacttctgccatctgtcagt 645
             |||||||||||||||||||||
Sbjct: 94201 gaacttctgccatctgtcagt 94181



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>gb|DQ099564.1| Taenia crassiceps isolate KAP450 5.8S ribosomal RNA gene and
           internal transcribed spacer 2, partial sequence
          Length = 611

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 199 acctgacctgacctgacctcg 219
           |||||||||||||||||||||
Sbjct: 42  acctgacctgacctgacctcg 22



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>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 317    accaggttttgctccttgtgc 337
              |||||||||||||||||||||
Sbjct: 427379 accaggttttgctccttgtgc 427359


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,739,056
Number of Sequences: 3902068
Number of extensions: 5739056
Number of successful extensions: 109303
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109168
Number of HSP's gapped (non-prelim): 126
length of query: 755
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 732
effective length of database: 17,143,297,704
effective search space: 12548893919328
effective search space used: 12548893919328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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