| Clone Name | rbags38h04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009202.1| Triticum aestivum clone wle1n.pk0018.b10:fis, full insert mRNA sequence Length = 1210 Score = 694 bits (350), Expect = 0.0 Identities = 423/446 (94%), Gaps = 1/446 (0%) Strand = Plus / Minus Query: 293 atctgatttcttcacggctggctaaccaggttttgctccttgtgccaaccgacaacatca 352 ||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||||| Sbjct: 996 atctgatttcttcaccgtttgctaaccaggttttgctccttgtgccaacggacaacatca 937 Query: 353 tcgtagggcaaatctcctccgaatatgtctagggcgctcccaacagtaacatcaactcga 412 ||||| ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||| Sbjct: 936 tcgtacggcaaatctcccccaaatatgtctagggcgctcccgacagtgacatcgactcgg 877 Query: 413 ctcttgcctgctttcttgatcctctccaggtcgtccatcgttgacacacccccagcgtat 472 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 876 ctcttgcctgctttcttgatcctctccaggtcgtccatcgttgacacgcccccggcgtat 817 Query: 473 gttgtcgggataggtgaatgacttcccaatagttccacgagttcctcatcaattcctaac 532 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct: 816 gttgtcgggataggtgaatgacttcccagtagctccacgagttcctcatcaattcctaac 757 Query: 533 cttttgccctccacatcaactccatgaaccaaaaactcatctgcatattcagcaagacgt 592 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 756 cttttgccctccacatcaactccatgaaccaaaaactcatctgcatatgcagcaagacgt 697 Query: 593 tctaatgttggcccatccacaaagacatcgctgaacttctgccatctgtcagtcacaatg 652 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 696 tctaatgttggcccatccacaaagacatcactgaacttctgccatctgtcagtcacaatg 637 Query: 653 gcatatctgccatccttctttcgacaactaaggtccaaaataagccttcgtttcccaaca 712 ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| Sbjct: 636 gcatatctgccatccttttttcgacaactcaggtccaaaataagcctttctttcccaaca 577 Query: 713 agctcaacaaggttgcgtcagccttt 738 ||||| |||| ||||||||||||||| Sbjct: 576 agctcgacaa-gttgcgtcagccttt 552 Score = 63.9 bits (32), Expect = 7e-07 Identities = 76/88 (86%), Gaps = 2/88 (2%) Strand = Plus / Minus Query: 57 tacaatacaaaacagaatgtaaagcacggtatctaaacaccgagtactcctctacaacgc 116 ||||||||||| |||||||||||| || |||||| || ||||||| |||||||| || | Sbjct: 1166 tacaatacaaa-cagaatgtaaagtacagtatctgaataccgagtggtcctctaccacac 1108 Query: 117 cga-cttgacacctccgcttcagctttg 143 ||| |||||||||| |||||||||||| Sbjct: 1107 cgaggttgacacctctgcttcagctttg 1080
>dbj|AK067898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124K03, full insert sequence Length = 829 Score = 398 bits (201), Expect = e-107 Identities = 351/401 (87%) Strand = Plus / Minus Query: 311 tggctaaccaggttttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcct 370 |||||||||| ||||| |||||||||||| || || || | |||||||||||||||| Sbjct: 467 tggctaaccatattttgttccttgtgccaaagaacgacgtccttgtagggcaaatctcct 408 Query: 371 ccgaatatgtctagggcgctcccaacagtaacatcaactcgactcttgcctgctttcttg 430 |||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| | || Sbjct: 407 ccgaatatatcaagggcactcccaaccgtaacatcaactcgactgttgcctgctcttttt 348 Query: 431 atcctctccaggtcgtccatcgttgacacacccccagcgtatgttgtcgggataggtgaa 490 |||||||| ||||| ||||| || |||||||||||||| || ||| || ||||||||| Sbjct: 347 atcctctctaggtcatccattgtagacacacccccagcataagttacaggtataggtgaa 288 Query: 491 tgacttcccaatagttccacgagttcctcatcaattcctaaccttttgccctccacatca 550 | || |||||||||||| || ||||| |||||||||||||||||||| |||||||||||| Sbjct: 287 taacgtcccaatagttcgacaagttcttcatcaattcctaaccttttcccctccacatca 228 Query: 551 actccatgaaccaaaaactcatctgcatattcagcaagacgttctaatgttggcccatcc 610 || |||||||||||||| ||||||||||| |||||||| ||| |||||||||| ||||| Sbjct: 227 acaccatgaaccaaaaattcatctgcataggcagcaagatgttttaatgttggctcatcc 168 Query: 611 acaaagacatcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttc 670 ||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| Sbjct: 167 acaaagacatcactgaatttctgccatctgtcagtcacgatggcatatcttccatccttt 108 Query: 671 tttcgacaactaaggtccaaaataagccttcgtttcccaac 711 |||| ||||||||||||||||| |||||| |||||||||| Sbjct: 107 tttctacaactaaggtccaaaacaagcctatgtttcccaac 67
>dbj|AK065701.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037E09, full insert sequence Length = 1310 Score = 398 bits (201), Expect = e-107 Identities = 351/401 (87%) Strand = Plus / Minus Query: 311 tggctaaccaggttttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcct 370 |||||||||| ||||| |||||||||||| || || || | |||||||||||||||| Sbjct: 959 tggctaaccatattttgttccttgtgccaaagaacgacgtccttgtagggcaaatctcct 900 Query: 371 ccgaatatgtctagggcgctcccaacagtaacatcaactcgactcttgcctgctttcttg 430 |||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| | || Sbjct: 899 ccgaatatatcaagggcactcccaaccgtaacatcaactcgactgttgcctgctcttttt 840 Query: 431 atcctctccaggtcgtccatcgttgacacacccccagcgtatgttgtcgggataggtgaa 490 |||||||| ||||| ||||| || |||||||||||||| || ||| || ||||||||| Sbjct: 839 atcctctctaggtcatccattgtagacacacccccagcataagttacaggtataggtgaa 780 Query: 491 tgacttcccaatagttccacgagttcctcatcaattcctaaccttttgccctccacatca 550 | || |||||||||||| || ||||| |||||||||||||||||||| |||||||||||| Sbjct: 779 taacgtcccaatagttcgacaagttcttcatcaattcctaaccttttcccctccacatca 720 Query: 551 actccatgaaccaaaaactcatctgcatattcagcaagacgttctaatgttggcccatcc 610 || |||||||||||||| ||||||||||| |||||||| ||| |||||||||| ||||| Sbjct: 719 acaccatgaaccaaaaattcatctgcataggcagcaagatgttttaatgttggctcatcc 660 Query: 611 acaaagacatcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttc 670 ||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| Sbjct: 659 acaaagacatcactgaatttctgccatctgtcagtcacgatggcatatcttccatccttt 600 Query: 671 tttcgacaactaaggtccaaaataagccttcgtttcccaac 711 |||| ||||||||||||||||| |||||| |||||||||| Sbjct: 599 tttctacaactaaggtccaaaacaagcctatgtttcccaac 559
>gb|AY103789.1| Zea mays PCO071948 mRNA sequence Length = 1544 Score = 349 bits (176), Expect = 8e-93 Identities = 344/400 (86%) Strand = Plus / Minus Query: 324 tttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcctccgaatatgtcta 383 |||||| |||||||||| ||||||||| | |||||| ||||||||||| ||||| |||| Sbjct: 1314 tttgcttcttgtgccaaaggacaacatctttgtagggtaaatctcctccaaatatatcta 1255 Query: 384 gggcgctcccaacagtaacatcaactcgactcttgcctgctttcttgatcctctccaggt 443 | || ||||||||||| ||||| |||||||| |||||||| ||||| |||||||| |||| Sbjct: 1254 gagcactcccaacagttacatctactcgacttttgcctgccttctttatcctctctaggt 1195 Query: 444 cgtccatcgttgacacacccccagcgtatgttgtcgggataggtgaatgacttcccaata 503 | ||||| ||||||||||||||||| || ||| ||||| ||||||||| ||||||| Sbjct: 1194 catccattgttgacacacccccagcataagttactgggattggtgaatgatgccccaata 1135 Query: 504 gttccacgagttcctcatcaattcctaaccttttgccctccacatcaactccatgaacca 563 ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 1134 gttccacaagttcctcatcaatccctaaccttttgccctccacatcaacaccatgaacca 1075 Query: 564 aaaactcatctgcatattcagcaagacgttctaatgttggcccatccacaaagacatcgc 623 ||||||||||||| | |||| ||| |||||||| || |||||||||| ||||| | Sbjct: 1074 aaaactcatctgcgaaggcagcgagatattctaatgccggttcatccacaaacacatcac 1015 Query: 624 tgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaactaa 683 ||||||||||||| |||||||| ||||| | ||||||||||||||| |||||||| |||| Sbjct: 1014 tgaacttctgccacctgtcagttacaatagtatatctgccatccttttttcgacagctaa 955 Query: 684 ggtccaaaataagccttcgtttcccaacaagctcaacaag 723 |||||| | |||||| |||||||||| ||||| ||||| Sbjct: 954 ggtccagcacaagcctctgtttcccaaccagctcgacaag 915
>gb|AY108861.1| Zea mays PCO071947 mRNA sequence Length = 817 Score = 321 bits (162), Expect = 2e-84 Identities = 315/366 (86%) Strand = Plus / Minus Query: 324 tttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcctccgaatatgtcta 383 |||||| | |||||||| ||||||||| | ||| |||||||||||||| ||||| |||| Sbjct: 371 tttgcttcctgtgccaaaggacaacatctttgtaaggcaaatctcctccaaatatatcta 312 Query: 384 gggcgctcccaacagtaacatcaactcgactcttgcctgctttcttgatcctctccaggt 443 | || ||||||| || ||||| || ||||| |||||||||||||| |||||||| |||| Sbjct: 311 gagcactcccaattgttacatctacccgacttttgcctgctttctttatcctctctaggt 252 Query: 444 cgtccatcgttgacacacccccagcgtatgttgtcgggataggtgaatgacttcccaata 503 ||||||| ||||||||||||||||| || || ||||| ||||||| ||||||| Sbjct: 251 cgtccattgttgacacacccccagcataagtgactgggattggtgaatagtgccccaata 192 Query: 504 gttccacgagttcctcatcaattcctaaccttttgccctccacatcaactccatgaacca 563 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 191 gttccacaagttcctcatcaattcctaaccttttgccctccacatcaacaccatgaacca 132 Query: 564 aaaactcatctgcatattcagcaagacgttctaatgttggcccatccacaaagacatcgc 623 |||||||||||||| | |||| ||| |||||||||||| |||||||||| ||||| | Sbjct: 131 aaaactcatctgcaaaggcagcgagatattctaatgttggttcatccacaaacacatcac 72 Query: 624 tgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaactaa 683 ||||||| ||||| |||||||| ||||||| ||||| ||||||||| ||||||||||| | Sbjct: 71 tgaacttttgccacctgtcagttacaatggtatatcggccatccttttttcgacaactga 12 Query: 684 ggtcca 689 |||||| Sbjct: 11 ggtcca 6
>gb|AY112654.1| Zea mays CL15_-1 mRNA sequence Length = 1089 Score = 262 bits (132), Expect = 2e-66 Identities = 329/400 (82%) Strand = Plus / Minus Query: 324 tttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcctccgaatatgtcta 383 |||||| |||||||||| ||||||||| | |||||| ||||||||||| ||||| |||| Sbjct: 663 tttgcttcttgtgccaaaggacaacatctttgtagggtaaatctcctccaaatatatcta 604 Query: 384 gggcgctcccaacagtaacatcaactcgactcttgcctgctttcttgatcctctccaggt 443 | || ||||||||||| ||||| |||||||| |||||||| ||||| |||||||| |||| Sbjct: 603 gagcactcccaacagttacatctactcgacttttgcctgccttctttatcctctctaggt 544 Query: 444 cgtccatcgttgacacacccccagcgtatgttgtcgggataggtgaatgacttcccaata 503 | ||||| ||||||||| ||| || ||| ||||| ||||||||| ||||||| Sbjct: 543 catccattgttgacacannnnnagcataagttactgggattggtgaatgatgccccaata 484 Query: 504 gttccacgagttcctcatcaattcctaaccttttgccctccacatcaactccatgaacca 563 ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 483 gttccacaagttcctcatcaatccctaaccttttgccctccacatcaacaccatgaaccn 424 Query: 564 aaaactcatctgcatattcagcaagacgttctaatgttggcccatccacaaagacatcgc 623 ||||||||| | |||| ||| |||||||| || |||||||||| ||||| | Sbjct: 423 nnnnctcatctgcgaaggcagcgagatattctaatgccggttcatccacaaacacatcac 364 Query: 624 tgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaactaa 683 ||||||||||||| |||||||| ||||| | ||||||||||||| ||||| |||| Sbjct: 363 tgaacttctgccacctgtcagttacaatagtatatctgccatccnnnnnncgacagctaa 304 Query: 684 ggtccaaaataagccttcgtttcccaacaagctcaacaag 723 |||||| | |||||| |||||||||| ||||| ||||| Sbjct: 303 ggtccagcacaagcctctgtttcccaaccagctcgacaag 264
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16, complete sequence Length = 170233 Score = 178 bits (90), Expect = 2e-41 Identities = 126/138 (91%) Strand = Plus / Minus Query: 531 accttttgccctccacatcaactccatgaaccaaaaactcatctgcatattcagcaagac 590 ||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct: 54734 accttttcccctccacatcaacaccatgaaccaaaaattcatctgcataggcagcaagat 54675 Query: 591 gttctaatgttggcccatccacaaagacatcgctgaacttctgccatctgtcagtcacaa 650 ||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||| | Sbjct: 54674 gttttaatgttggctcatccacaaagacatcactgaatttctgccatctgtcagtcacga 54615 Query: 651 tggcatatctgccatcct 668 |||||||||| ||||||| Sbjct: 54614 tggcatatcttccatcct 54597 Score = 139 bits (70), Expect = 2e-29 Identities = 136/158 (86%) Strand = Plus / Minus Query: 311 tggctaaccaggttttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcct 370 |||||||||| ||||| |||||||||||| || || || | |||||||||||||||| Sbjct: 56024 tggctaaccatattttgttccttgtgccaaagaacgacgtccttgtagggcaaatctcct 55965 Query: 371 ccgaatatgtctagggcgctcccaacagtaacatcaactcgactcttgcctgctttcttg 430 |||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| | || Sbjct: 55964 ccgaatatatcaagggcactcccaaccgtaacatcaactcgactgttgcctgctcttttt 55905 Query: 431 atcctctccaggtcgtccatcgttgacacacccccagc 468 |||||||| ||||| ||||| || |||||||||||||| Sbjct: 55904 atcctctctaggtcatccattgtagacacacccccagc 55867 Score = 61.9 bits (31), Expect = 3e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 484 aggtgaatgacttcccaatagttccacgagttcctcatcaattcctaacct 534 |||||||| || |||||||||||| || ||||| ||||||||||||||||| Sbjct: 55244 aggtgaataacgtcccaatagttcgacaagttcttcatcaattcctaacct 55194 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 666 ccttctttcgacaactaaggtccaaaataagccttcgtttcccaac 711 |||| |||| ||||||||||||||||| |||||| |||||||||| Sbjct: 53792 ccttttttctacaactaaggtccaaaacaagcctatgtttcccaac 53747
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 178 bits (90), Expect = 2e-41 Identities = 126/138 (91%) Strand = Plus / Minus Query: 531 accttttgccctccacatcaactccatgaaccaaaaactcatctgcatattcagcaagac 590 ||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct: 19351385 accttttcccctccacatcaacaccatgaaccaaaaattcatctgcataggcagcaagat 19351326 Query: 591 gttctaatgttggcccatccacaaagacatcgctgaacttctgccatctgtcagtcacaa 650 ||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||| | Sbjct: 19351325 gttttaatgttggctcatccacaaagacatcactgaatttctgccatctgtcagtcacga 19351266 Query: 651 tggcatatctgccatcct 668 |||||||||| ||||||| Sbjct: 19351265 tggcatatcttccatcct 19351248 Score = 139 bits (70), Expect = 2e-29 Identities = 136/158 (86%) Strand = Plus / Minus Query: 311 tggctaaccaggttttgctccttgtgccaaccgacaacatcatcgtagggcaaatctcct 370 |||||||||| ||||| |||||||||||| || || || | |||||||||||||||| Sbjct: 19352675 tggctaaccatattttgttccttgtgccaaagaacgacgtccttgtagggcaaatctcct 19352616 Query: 371 ccgaatatgtctagggcgctcccaacagtaacatcaactcgactcttgcctgctttcttg 430 |||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| | || Sbjct: 19352615 ccgaatatatcaagggcactcccaaccgtaacatcaactcgactgttgcctgctcttttt 19352556 Query: 431 atcctctccaggtcgtccatcgttgacacacccccagc 468 |||||||| ||||| ||||| || |||||||||||||| Sbjct: 19352555 atcctctctaggtcatccattgtagacacacccccagc 19352518 Score = 61.9 bits (31), Expect = 3e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 484 aggtgaatgacttcccaatagttccacgagttcctcatcaattcctaacct 534 |||||||| || |||||||||||| || ||||| ||||||||||||||||| Sbjct: 19351895 aggtgaataacgtcccaatagttcgacaagttcttcatcaattcctaacct 19351845 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 666 ccttctttcgacaactaaggtccaaaataagccttcgtttcccaac 711 |||| |||| ||||||||||||||||| |||||| |||||||||| Sbjct: 19350443 ccttttttctacaactaaggtccaaaacaagcctatgtttcccaac 19350398
>gb|AY570531.1| Alyssum lesbiacum phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide isomerase (ProFARI) mRNA, partial cds Length = 394 Score = 103 bits (52), Expect = 8e-19 Identities = 88/100 (88%) Strand = Plus / Minus Query: 614 aagacatcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttcttt 673 |||||||||||||||||||||||||| ||||| || || |||||||| |||||||||||| Sbjct: 351 aagacatcgctgaacttctgccatctatcagtaacgattgcatatcttccatccttcttt 292 Query: 674 cgacaactaaggtccaaaataagccttcgtttcccaacaa 713 | || ||||||||||| || || ||| |||||||||||| Sbjct: 291 ctgcagctaaggtccaatatcagtctttgtttcccaacaa 252
>ref|NM_129181.2| Arabidopsis thaliana BBM II II; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase AT2G36230 (BBM II II) mRNA, complete cds Length = 1122 Score = 91.7 bits (46), Expect = 3e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679 |||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||| || Sbjct: 634 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 575 Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713 ||||||||||| || || ||| |||||||||||| Sbjct: 574 ctaaggtccaatatcagtctttgtttcccaacaa 541
>gb|AY140058.1| Arabidopsis thaliana phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (At2g36230) mRNA, complete cds Length = 1112 Score = 91.7 bits (46), Expect = 3e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679 |||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||| || Sbjct: 630 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 571 Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713 ||||||||||| || || ||| |||||||||||| Sbjct: 570 ctaaggtccaatatcagtctttgtttcccaacaa 537
>gb|AY089074.1| Arabidopsis thaliana clone 2813 mRNA, complete sequence Length = 1114 Score = 91.7 bits (46), Expect = 3e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679 |||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||| || Sbjct: 625 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 566 Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713 ||||||||||| || || ||| |||||||||||| Sbjct: 565 ctaaggtccaatatcagtctttgtttcccaacaa 532
>gb|BT002552.1| Arabidopsis thaliana phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (At2g36230) mRNA, complete cds Length = 965 Score = 91.7 bits (46), Expect = 3e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679 |||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||| || Sbjct: 605 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 546 Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713 ||||||||||| || || ||| |||||||||||| Sbjct: 545 ctaaggtccaatatcagtctttgtttcccaacaa 512
>dbj|AB006139.1| Arabidopsis thaliana mRNA for phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, complete cds Length = 1094 Score = 91.7 bits (46), Expect = 3e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679 |||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||| || Sbjct: 634 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 575 Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713 ||||||||||| || || ||| |||||||||||| Sbjct: 574 ctaaggtccaatatcagtctttgtttcccaacaa 541
>dbj|AK118659.1| Arabidopsis thaliana At2g36230 mRNA for putative phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, complete cds, clone: RAFL19-93-D13 Length = 1033 Score = 91.7 bits (46), Expect = 3e-15 Identities = 82/94 (87%) Strand = Plus / Minus Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatccttctttcgacaa 679 |||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||| || Sbjct: 630 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatccttctttctgcag 571 Query: 680 ctaaggtccaaaataagccttcgtttcccaacaa 713 ||||||||||| || || ||| |||||||||||| Sbjct: 570 ctaaggtccaatatcagtctttgtttcccaacaa 537
>gb|AC006921.6| Arabidopsis thaliana chromosome 2 clone F2H17 map g6825, complete sequence Length = 91354 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatcct 668 |||||||||||||||||||| ||||| ||||| || ||||| ||||||| Sbjct: 69163 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatcct 69115
>dbj|AB195273.1| Arabidopsis thaliana gene for BBMII isomerase, complete cds Length = 1693 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatcct 668 |||||||||||||||||||| ||||| ||||| || ||||| ||||||| Sbjct: 985 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatcct 937
>dbj|AB008929.1| Arabidopsis thaliana gene for N'-5'-phosphoribosyl-formimino-5-aminoimidazole-4- carboxamide ribonucleotide isomerase, complete cds Length = 2282 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 620 tcgctgaacttctgccatctgtcagtcacaatggcatatctgccatcct 668 |||||||||||||||||||| ||||| ||||| || ||||| ||||||| Sbjct: 1253 tcgctgaacttctgccatctatcagtaacaattgcgtatcttccatcct 1205
>gb|AC111125.11| Mus musculus chromosome 9, clone RP23-331P8, complete sequence Length = 260036 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Plus Query: 200 cctgacctgacctgacctcgcctgaac 226 |||||||||||||||||| |||||||| Sbjct: 234831 cctgacctgacctgacctggcctgaac 234857
>emb|AL160168.11| Human DNA sequence from clone RP11-394O9 on chromosome 9, complete sequence Length = 151202 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 481 gataggtgaatgacttcccaata 503 ||||||||||||||||||||||| Sbjct: 26476 gataggtgaatgacttcccaata 26498
>gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome 9, complete sequence Length = 216124 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Plus Query: 200 cctgacctgacctgacctcgcctgaac 226 |||||||||||||||||| |||||||| Sbjct: 62087 cctgacctgacctgacctggcctgaac 62113
>gb|AC102038.9| Mus musculus chromosome 19, clone RP23-248G20, complete sequence Length = 159945 Score = 44.1 bits (22), Expect = 0.66 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 acctgacctgacctgacctcgcctga 224 ||||||||||||||||||| |||||| Sbjct: 137792 acctgacctgacctgacctggcctga 137817
>gb|AC159286.3| Mus musculus BAC clone RP23-314E22 from chromosome 14, complete sequence Length = 210984 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 aggtcaaatgaggattacaga 256 ||||||||||||||||||||| Sbjct: 69697 aggtcaaatgaggattacaga 69677
>gb|AC121257.6| Mus musculus chromosome 14, clone RP24-202E4, complete sequence Length = 188883 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 aggtcaaatgaggattacaga 256 ||||||||||||||||||||| Sbjct: 175256 aggtcaaatgaggattacaga 175276
>emb|AL591499.7| Human DNA sequence from clone RP11-15G8 on chromosome 6 Contains the 5' end of a novel gene (KIAA1116), a stathmin-like 2 (Superiorcervical ganglia, neural specific 10 superior cervical ganglia, neural specific 10 neuronal growth-associated protein (silencer) (STMN2) (SCG10, SGC10, SCGN10) pseudogene and two CpG islands, complete sequence Length = 111864 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 559 aaccaaaaactcatctgcata 579 ||||||||||||||||||||| Sbjct: 104622 aaccaaaaactcatctgcata 104602
>emb|AL359314.14| Human DNA sequence from clone RP11-108L4 on chromosome 9 Contains the 5' end of the KIAA0367 gene and the 5' end of the PCA3 gene for prostate cancer antigen 3 (DD3), complete sequence Length = 128480 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 625 gaacttctgccatctgtcagt 645 ||||||||||||||||||||| Sbjct: 94201 gaacttctgccatctgtcagt 94181
>gb|DQ099564.1| Taenia crassiceps isolate KAP450 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence Length = 611 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 acctgacctgacctgacctcg 219 ||||||||||||||||||||| Sbjct: 42 acctgacctgacctgacctcg 22
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 accaggttttgctccttgtgc 337 ||||||||||||||||||||| Sbjct: 427379 accaggttttgctccttgtgc 427359 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,739,056 Number of Sequences: 3902068 Number of extensions: 5739056 Number of successful extensions: 109303 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109168 Number of HSP's gapped (non-prelim): 126 length of query: 755 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 732 effective length of database: 17,143,297,704 effective search space: 12548893919328 effective search space used: 12548893919328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)