ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38h02 |
|---|---|
| Clone Library Name | barley_pub |
>SAM50_HUMAN (Q9Y512) Sorting and assembly machinery component 50 homolog| Length = 469 Score = 39.3 bits (90), Expect = 0.006 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = -2 Query: 446 HAFLTAGNLAKLSEGQYKNFSLDEFRRSFRSTAGVGIILPT-KLFRVEVNYCYILKQSRH 270 H FL AGNL L+ G+ + + R + G GI+L + R+E+NYC + Sbjct: 394 HFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCVPMGVQTG 453 Query: 269 DSGKTGIQF 243 D G+QF Sbjct: 454 DRICDGVQF 462
>SAM50_CAEEL (P46576) SAM50-like protein gop-3 (Gro-1 operon protein 3)| Length = 434 Score = 34.7 bits (78), Expect = 0.15 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = -2 Query: 455 IHGHAFLTAGNLAKLSEGQYKNFSLDEFRRSFRSTAGVGIILPTK-LFRVEVNYCYILKQ 279 + HAFL +G++A + KN + + + + R +AG G+ K +FR+E+NY Y LK Sbjct: 360 LFAHAFLASGSVASVHS---KNL-VQQLQDTQRVSAGFGLAFVFKSIFRLELNYTYPLKY 415 Query: 278 SRHDS 264 DS Sbjct: 416 VLGDS 420
>BIR1B_MOUSE (Q9QUK4) Baculoviral IAP repeat-containing protein 1b (Neuronal| apoptosis inhibitory protein 2) Length = 1447 Score = 31.2 bits (69), Expect = 1.6 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Frame = +1 Query: 22 LVFELHRHLR-DTPLVLKRREQNPYRLLLSTKRKYPSEQRKKGTKWEEAKRSTTQKGWCD 198 LV EL LR D VLKR+++ ++ + K+ + S+ R + + + + + W Sbjct: 19 LVSELSTLLRVDALSVLKRQQEEDHKTRMKMKKGFNSQMRSEAKRLKTFETYDKFRSWTP 78 Query: 199 VQCLVAGLYEGEEKL 243 + AG Y KL Sbjct: 79 QEMAAAGFYHTGVKL 93
>SAM50_SCHPO (Q10478) SAM50-like protein SpAC17C9.06| Length = 475 Score = 31.2 bits (69), Expect = 1.6 Identities = 27/86 (31%), Positives = 42/86 (48%) Frame = -2 Query: 500 DVSFDLPLKLFRDAGIHGHAFLTAGNLAKLSEGQYKNFSLDEFRRSFRSTAGVGIILPTK 321 D S L+LF +AG G + LT+ N G YK+ + ST G+G++ T Sbjct: 394 DASKPFRLQLFANAG--GLSNLTSPNPC----GTYKSI----LSKPCIST-GLGLVYATP 442 Query: 320 LFRVEVNYCYILKQSRHDSGKTGIQF 243 R E+N+ + + D G+ G+QF Sbjct: 443 AARFELNFTLPIATTEKDIGRKGLQF 468
>SAM50_YEAST (P53969) Sorting assembly machinery protein 50| Length = 484 Score = 30.8 bits (68), Expect = 2.1 Identities = 18/81 (22%), Positives = 33/81 (40%) Frame = -2 Query: 485 LPLKLFRDAGIHGHAFLTAGNLAKLSEGQYKNFSLDEFRRSFRSTAGVGIILPTKLFRVE 306 LP K + H F G L N + + + ++ G+G++L + R E Sbjct: 398 LPWKKVEKSNFRLHWFFNGGKLVNHDNTSLGN-CIGQLSKEHSTSTGIGLVLRHPMARFE 456 Query: 305 VNYCYILKQSRHDSGKTGIQF 243 +N+ + +D + G QF Sbjct: 457 LNFTLPITAHENDLIRKGFQF 477
>PELX_ERWCH (P22751) Pectate disaccharide-lyase precursor (EC 4.2.2.9)| (Exopolygalacturonate lyase) (ExoPL) Length = 749 Score = 30.4 bits (67), Expect = 2.8 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = -2 Query: 341 GIILPTKLFRVEVNYCYILKQSRHDSGKTGIQFSFSSPS*RPATKHWTSHHPFCVVDRFA 162 GI + K FR+E ++ I + H TGIQ S S RP W SH+ + + Sbjct: 472 GIEITEKSFRIEGSHNQIERLLAHHCDNTGIQVSSSDNVGRPL---WASHNLILNSESHS 528 Query: 161 SSH 153 + H Sbjct: 529 NQH 531
>VG18_ICHV1 (Q00120) Hypothetical gene 18 protein| Length = 318 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -3 Query: 91 KGSVPFSLTLMVCHGGACVTQIPM 20 + S+P TL+VCHG VT +P+ Sbjct: 257 RASIPRRFTLIVCHGTVAVTAVPV 280
>METL6_MOUSE (Q8BVH9) Methyltransferase-like protein 6 (EC 2.1.1.-)| Length = 282 Score = 29.3 bits (64), Expect = 6.2 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Frame = -2 Query: 473 LFRDAGIHGHAFLTAGNLAKLSEGQY-------KNFSLDEFRRSFRSTAGVGIILPTKLF 315 LFRD G++ HA L +KL E Y F DEF AG ++ +F Sbjct: 186 LFRDYGLNDHAMLRFKAGSKLGENFYVRQDGTRSYFFTDEFLAQLFVDAGYEEVVNEYVF 245 Query: 314 RVEVN 300 R VN Sbjct: 246 RETVN 250
>VMP_CAMVW (Q01089) Movement protein (Cell-to-cell transport protein)| Length = 327 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 171 VHNAKGMVRRPVLGSRSLRGRGEAELNSRLSTVVPRLLQNVTVVHLHTEKL 323 +H+A G V P++ E+N RLS++ P + + +++VHL K+ Sbjct: 92 IHDATGKVYLPLITKE--------EINKRLSSLKPEVRRTMSMVHLGAVKI 134
>VMP_CAMVS (P03545) Movement protein (Cell-to-cell transport protein)| Length = 327 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 171 VHNAKGMVRRPVLGSRSLRGRGEAELNSRLSTVVPRLLQNVTVVHLHTEKL 323 +H+A G V P++ E+N RLS++ P + + +++VHL K+ Sbjct: 92 IHDATGKVYLPLITKE--------EINKRLSSLKPEVRKTMSMVHLGAVKI 134
>VMP_CAMVN (Q00966) Movement protein (Cell-to-cell transport protein)| Length = 327 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 171 VHNAKGMVRRPVLGSRSLRGRGEAELNSRLSTVVPRLLQNVTVVHLHTEKL 323 +H+A G V P++ E+N RLS++ P + + +++VHL K+ Sbjct: 92 IHDATGKVYLPLITKE--------EINKRLSSLKPEVRKTMSMVHLGAVKI 134
>VMP_CAMVD (P03547) Movement protein (Cell-to-cell transport protein)| Length = 327 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 171 VHNAKGMVRRPVLGSRSLRGRGEAELNSRLSTVVPRLLQNVTVVHLHTEKL 323 +H+A G V P++ E+N RLS++ P + + +++VHL K+ Sbjct: 92 IHDATGKVYLPLITKE--------EINKRLSSLKPEVRRTMSMVHLGAVKI 134
>LEF4_NPVAC (P41477) Late expression factor 4| Length = 464 Score = 29.3 bits (64), Expect = 6.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +1 Query: 364 ERRNSSREKFLYWPSDNFARFPAV 435 ++ NS +KF+YWP D A P V Sbjct: 68 KKTNSKHKKFVYWPKDTNALVPLV 91
>VMP_CAMVE (Q02968) Movement protein (Cell-to-cell transport protein)| Length = 327 Score = 28.9 bits (63), Expect = 8.1 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 171 VHNAKGMVRRPVLGSRSLRGRGEAELNSRLSTVVPRLLQNVTVVHLHTEKL 323 +H+A G V P++ E+N RLS++ P + + +++VHL K+ Sbjct: 92 IHDATGKVYLPLITRE--------EINKRLSSLKPEVRKTMSMVHLGAVKI 134
>5HT2C_MOUSE (P34968) 5-hydroxytryptamine 2C receptor (5-HT-2C) (Serotonin| receptor 2C) (5-HT2C) (5-HTR2C) (5HT-1C) Length = 459 Score = 28.9 bits (63), Expect = 8.1 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 72 EKGTEPLQAPLVNEAQVP*RTEKERNKMGGGEAVHNAK 185 +KG E AP N Q P R +KE+ G +A++N K Sbjct: 271 KKGDEEENAPNPNPDQKPRRKKKEKRPRGTMQAINNEK 308
>RFA2_YEAST (P26754) Replication factor-A protein 2 (RF-A) (DNA-binding protein| BUF1) (Replication protein A 36 kDa subunit) Length = 273 Score = 28.9 bits (63), Expect = 8.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 213 SRSLRGRGEAELNSRLSTVVPRLLQNVTVVHLHTEKLGRQDNAYASSTPE 362 S S G GE+E N+R++T+ P VT+ + K QD + S E Sbjct: 21 SESRPGSGESETNTRVNTLTP-----VTIKQILESKQDIQDGPFVSHNQE 65
>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)| (x.MCM7) Length = 720 Score = 28.9 bits (63), Expect = 8.1 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +1 Query: 76 REQNPYRLLLSTKRKYPSEQRKKGTKWEEAKRSTTQKGWCDVQCLVAGLYEGEE 237 R Q P ++ ST R+ E+ + K+ EA++ KG+ Q A L E EE Sbjct: 652 RTQRPADVIFSTIREMVPEKGARSVKYSEAEQRCVSKGFTPAQ-FEAALEEYEE 704
>KDKA_PASPI (P58551) 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) (KDO| kinase) Length = 240 Score = 28.9 bits (63), Expect = 8.1 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +3 Query: 273 PRLLQNVTVVHLHTEKLGRQDNAYASSTPE*TTEFIEGEVLVLALRQLRK 422 P LL + +E +Q+ S+ TT F++GE L +ALR R+ Sbjct: 15 PELLTETPEMAFSSEFWQQQNKIIGSAQGRGTTWFVQGEKLAMALRHYRR 64 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,423,923 Number of Sequences: 219361 Number of extensions: 1696984 Number of successful extensions: 5076 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4879 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5070 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
