ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38g14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form ... 30 4.2
2HSF_SCHPO (Q02953) Heat shock factor protein (HSF) (Heat shock t... 29 9.5

>STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form stabilin-2]|
          Length = 2559

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 230  GSMLCRRGWFLKFLGFTTILAVLCISSFSLFVACVLLHNTEVLN 99
            G  LC  GW  +F    T++  +CI + S+   C + +NT V N
Sbjct: 2036 GQCLCEAGWTGRFCDAPTVVIPVCIPACSMHATC-MENNTCVCN 2078



to top

>HSF_SCHPO (Q02953) Heat shock factor protein (HSF) (Heat shock transcription|
           factor) (HSTF)
          Length = 609

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = -3

Query: 282 SQDPLIRLQFHGDD*ILRFYVVS*RLVLEVSWFHHNFSSFVYQL 151
           S D LIR    GD  ++  +    +LVL   + H+NFSSFV QL
Sbjct: 65  STDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQL 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,675,419
Number of Sequences: 219361
Number of extensions: 1479260
Number of successful extensions: 2875
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2875
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top