ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags38g03 |
|---|---|
| Clone Library Name | barley_pub |
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 55.8 bits (133), Expect = 1e-07 Identities = 31/87 (35%), Positives = 46/87 (52%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 + VK LP+ ++EK+++ F G+VT + L + G R F F+ + +A +AVK Sbjct: 4 LIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFN 63 Query: 470 KYEIDGQVLEVSMAKPLSDKKPDHSFK 390 K ID +EV AK SD SFK Sbjct: 64 KSFIDTARIEVEFAKTFSDPTVPLSFK 90 Score = 33.1 bits (74), Expect = 0.88 Identities = 12/35 (34%), Positives = 24/35 (68%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPA 552 K I VKN P + +++ +LF +G++ ++++PPA Sbjct: 493 KIILVKNFPFGTTIDEIGELFSAYGQLKRMLMPPA 527 Score = 32.7 bits (73), Expect = 1.2 Identities = 20/75 (26%), Positives = 35/75 (46%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I +KNLP +++ + +LF G++ + +P R F FV F A A+ E Sbjct: 719 IIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLE 778 Query: 470 KYEIDGQVLEVSMAK 426 + G+ L + A+ Sbjct: 779 GVHLLGRRLVMQYAE 793
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 55.5 bits (132), Expect = 2e-07 Identities = 26/83 (31%), Positives = 49/83 (59%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +YVKNLP+ ++ +++K F +G+++ V+ ++G+ R FGFV+F +A AV+ Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286 Query: 470 KYEIDGQVLEVSMAKPLSDKKPD 402 + VL V A+ SD++ + Sbjct: 287 GISLGEDVLYVGRAQKKSDREEE 309 Score = 49.3 bits (116), Expect = 1e-05 Identities = 27/85 (31%), Positives = 47/85 (55%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 Q +Y+KNL ++V+ EK+K++F +G VT + G R FGFV ++ AL A+ Sbjct: 326 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAM 385 Query: 482 KGSEKYEIDGQVLEVSMAKPLSDKK 408 K I + L V++A+ +++ Sbjct: 386 KEMNGKMIGRKPLYVALAQRKEERQ 410 Score = 30.8 bits (68), Expect = 4.4 Identities = 12/56 (21%), Positives = 27/56 (48%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 +++KNL ++ + + + F G + + G + +GFV F + +A A+ Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAI 189
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 53.9 bits (128), Expect = 5e-07 Identities = 29/87 (33%), Positives = 47/87 (54%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 +AQ KT++V+ L E+ ++E +K+ F+ G V ++ G + FGFV F+ A Sbjct: 498 SAQSKTLFVRGLSEDTTEETLKEAFD--GSVNARIVTDRDTGASKGFGFVDFSTAEDAKA 555 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKK 408 A + E EIDG + + AKP D + Sbjct: 556 AKEAMEDGEIDGNKVTLDFAKPKGDSQ 582 Score = 43.1 bits (100), Expect = 9e-04 Identities = 21/73 (28%), Positives = 42/73 (57%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +T++VKN+P + + E+++++FE I +P K G + +V F+ A KA++ Sbjct: 324 RTLFVKNIPYSTTVEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFSNEDEANKALEE 380 Query: 476 SEKYEIDGQVLEV 438 + EI+G+ + V Sbjct: 381 KQGAEIEGRSIFV 393 Score = 35.8 bits (81), Expect = 0.14 Identities = 19/82 (23%), Positives = 41/82 (50%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSAL 492 P K + V NL + +++ ++++FE + T I +P + G + F F+ F+ A Sbjct: 409 PEGDSKVLVVNNLSYSATEDSLREVFE---KATSIRIPQNQ-GRAKGFAFIEFSSAEDAK 464 Query: 491 KAVKGSEKYEIDGQVLEVSMAK 426 A+ EI+G+ + + ++ Sbjct: 465 DAMDSCNNTEIEGRSIRLEFSQ 486 Score = 31.6 bits (70), Expect = 2.6 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Frame = -2 Query: 710 PKGXXXXXXXXXSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRD 531 PK A++ +I++ NL +++KD + + + G+ + Sbjct: 214 PKTIPEAKKTKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRIGNSKK 273 Query: 530 FGFVHFAERSSALKAVKGSEKYEIDGQV-LEVSMA 429 FG+V F+ KA+K + K + +V +E +MA Sbjct: 274 FGYVDFSSEEEVEKALKLTGKKILGTEVKIEKAMA 308
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 53.9 bits (128), Expect = 5e-07 Identities = 27/88 (30%), Positives = 52/88 (59%) Frame = -2 Query: 665 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 486 A+VK ++V+NL V++E ++ F G++ ++ +D+ FVHF +R +A+KA Sbjct: 338 AKVKVLFVRNLATTVTEEILEKSFSEFGKLERVK-------KLKDYAFVHFEDRGAAVKA 390 Query: 485 VKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 + EI+G+ +E+ +AKP K+ + Sbjct: 391 MDEMNGKEIEGEEIEIVLAKPPDKKRKE 418 Score = 35.8 bits (81), Expect = 0.14 Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV--TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 ++V +P ++ ++++ LFE G + ++++ P +G R + F+ F + +A +AVK Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPL-SGQNRGYAFITFCGKEAAQEAVKL 225 Query: 476 SEKYEI 459 + YEI Sbjct: 226 CDSYEI 231
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 52.8 bits (125), Expect = 1e-06 Identities = 25/88 (28%), Positives = 51/88 (57%) Frame = -2 Query: 665 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 486 A+VK ++V+NL V++E ++ F G++ ++ +D+ F+HF ER A+KA Sbjct: 335 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVK-------KLKDYAFIHFDERDGAVKA 387 Query: 485 VKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 ++ +++G+ +E+ AKP K+ + Sbjct: 388 MEEMNGKDLEGENIEIVFAKPPDQKRKE 415
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/88 (28%), Positives = 51/88 (57%) Frame = -2 Query: 665 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 486 A+VK ++V+NL V++E ++ F G++ ++ +D+ F+HF ER A+KA Sbjct: 245 AKVKVLFVRNLANTVTEEILEKSFSQFGKLERVK-------KLKDYAFIHFDERDGAVKA 297 Query: 485 VKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 ++ +++G+ +E+ AKP K+ + Sbjct: 298 MEEMNGKDLEGENIEIVFAKPPDQKRKE 325
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/88 (28%), Positives = 51/88 (57%) Frame = -2 Query: 665 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 486 A+VK ++V+NL V++E ++ F G++ ++ +D+ F+HF ER A+KA Sbjct: 335 AKVKVLFVRNLANTVTEEILEKSFSQFGKLERVK-------KLKDYAFIHFDERDGAVKA 387 Query: 485 VKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 ++ +++G+ +E+ AKP K+ + Sbjct: 388 MEEMNGKDLEGENIEIVFAKPPDQKRKE 415
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVL--PPAKAGHKRDFGFVHFAERSSALKAV 483 +T+YV NLP ++ + +V+DLF +G V +I L PP G + FV F + A A+ Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPG----YAFVEFDDARDAEDAI 62 Query: 482 KGSEKYEIDGQVLEVSMA 429 G + Y+ DG L V +A Sbjct: 63 HGRDGYDFDGHRLRVELA 80
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 50.8 bits (120), Expect = 4e-06 Identities = 28/78 (35%), Positives = 42/78 (53%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 KT++VK L E+ ++E +K+ FE G V ++ + G + FGFV F A A + Sbjct: 574 KTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 631 Query: 476 SEKYEIDGQVLEVSMAKP 423 E EIDG + + AKP Sbjct: 632 MEDGEIDGNKVTLDWAKP 649 Score = 42.7 bits (99), Expect = 0.001 Identities = 21/82 (25%), Positives = 44/82 (53%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 + + KT+ + NL + ++E ++++FE + T I +P G + + F+ FA A + Sbjct: 484 SGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPHGKSKGYAFIEFASFEDAKE 540 Query: 488 AVKGSEKYEIDGQVLEVSMAKP 423 A+ K EI+G+ + + + P Sbjct: 541 ALNSCNKMEIEGRTIRLELQGP 562 Score = 35.8 bits (81), Expect = 0.14 Identities = 17/69 (24%), Positives = 39/69 (56%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +T+ KNL N++++++K++FE E+ + ++ G + ++ F + A K ++ Sbjct: 396 RTLLAKNLSFNITEDELKEVFEDAVEIRLV----SQDGRSKGIAYIEFKSEADAEKNLEE 451 Query: 476 SEKYEIDGQ 450 + EIDG+ Sbjct: 452 KQGAEIDGR 460
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 50.8 bits (120), Expect = 4e-06 Identities = 27/88 (30%), Positives = 45/88 (51%) Frame = -2 Query: 665 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 486 A +Y+KNL +++++ DLF GE+T + L + R FGFV++A A KA Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKA 317 Query: 485 VKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 V E G+ L V A+ +++ + Sbjct: 318 VDELNDKEYKGKKLYVGRAQKKHEREEE 345 Score = 43.1 bits (100), Expect = 9e-04 Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++KNL + V E++K F G +T + + G + FGFV + A KAV Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425 Query: 470 KYEIDGQVLEVSMAKPLSDKKPDHSFKXXXXXXXXXXXXXXXXXXXXXXXXXXXGFNQPM 291 + + G+ L V++A+ K+ S G P+ Sbjct: 426 QRMLAGKPLYVALAQ---RKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPL 482 Query: 290 IYGRG--PAPA-----GMRMVP 246 IYG G P PA GM MVP Sbjct: 483 IYGPGGYPIPAAVNGRGMPMVP 504 Score = 36.2 bits (82), Expect = 0.10 Identities = 15/57 (26%), Positives = 30/57 (52%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 +++KNL + + + D F G++ + + G+ + +GFVHF SA A++ Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIE 226
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 50.8 bits (120), Expect = 4e-06 Identities = 28/78 (35%), Positives = 42/78 (53%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 KT++VK L E+ ++E +K+ FE G V ++ + G + FGFV F A A + Sbjct: 568 KTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 625 Query: 476 SEKYEIDGQVLEVSMAKP 423 E EIDG + + AKP Sbjct: 626 MEDGEIDGNKVTLDWAKP 643 Score = 43.5 bits (101), Expect = 7e-04 Identities = 23/88 (26%), Positives = 46/88 (52%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 + + KT+ + NL + +KE ++++FE + T I +P G + + F+ FA A + Sbjct: 482 SGESKTLVLSNLSYSATKETLEEVFE---KATFIKVPQNPHGKPKGYAFIEFASFEDAKE 538 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKP 405 A+ K EI+G+ + + + S +P Sbjct: 539 ALNSCNKMEIEGRTIRLELQGSNSRSQP 566 Score = 35.4 bits (80), Expect = 0.18 Identities = 17/69 (24%), Positives = 39/69 (56%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +T+ KNL N++++++K++FE E+ + ++ G + ++ F + A K ++ Sbjct: 394 RTLLAKNLSFNITEDELKEVFEDAMEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEE 449 Query: 476 SEKYEIDGQ 450 + EIDG+ Sbjct: 450 KQGAEIDGR 458
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 50.8 bits (120), Expect = 4e-06 Identities = 28/78 (35%), Positives = 42/78 (53%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 KT++VK L E+ ++E +K+ FE G V ++ + G + FGFV F A A + Sbjct: 571 KTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 628 Query: 476 SEKYEIDGQVLEVSMAKP 423 E EIDG + + AKP Sbjct: 629 MEDGEIDGNKVTLDWAKP 646 Score = 43.9 bits (102), Expect = 5e-04 Identities = 21/82 (25%), Positives = 45/82 (54%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 + + KT+ + NL + ++E ++++FE + T I +P + G + + F+ FA A + Sbjct: 481 SGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQGKSKGYAFIEFASFEDAKE 537 Query: 488 AVKGSEKYEIDGQVLEVSMAKP 423 A+ K EI+G+ + + + P Sbjct: 538 ALNSCNKMEIEGRTIRLELQGP 559 Score = 35.0 bits (79), Expect = 0.23 Identities = 17/69 (24%), Positives = 39/69 (56%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +T+ KNL N++++++K++FE E+ + ++ G + ++ F + A K ++ Sbjct: 393 RTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEE 448 Query: 476 SEKYEIDGQ 450 + EIDG+ Sbjct: 449 KQGAEIDGR 457
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 50.4 bits (119), Expect = 5e-06 Identities = 25/89 (28%), Positives = 46/89 (51%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A + +Y+KN E++ E++KDLF G + + ++G + FGFV F A K Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 AV E++G+ + V A+ +++ + Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTE 275 Score = 41.6 bits (96), Expect = 0.002 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVT--KIVLPPAKAGHKRDFGFVHFAERSSALK 489 QV +YVKNL + + E+++ F G +T K+++ + G + FGFV F+ A K Sbjct: 292 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM---EGGRSKGFGFVCFSSPEEATK 348 Query: 488 AVKGSEKYEIDGQVLEVSMAKPL 420 AV E++G+++ KPL Sbjct: 349 AVT-----EMNGRIV---ATKPL 363 Score = 36.6 bits (83), Expect = 0.080 Identities = 21/86 (24%), Positives = 43/86 (50%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 V I+VKNL ++++ + + D G + + + G K +GFVHF +A +A+K Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK-GYGFVHFETHEAAERAIK 156 Query: 479 GSEKYEIDGQVLEVSMAKPLSDKKPD 402 ++G+ + V K +++ + Sbjct: 157 KMNGMLLNGRKVFVGQFKSRKEREAE 182
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.4 bits (119), Expect = 5e-06 Identities = 25/89 (28%), Positives = 46/89 (51%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A + +Y+KN E++ E++KDLF G + + ++G + FGFV F A K Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 AV E++G+ + V A+ +++ + Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTE 275 Score = 38.1 bits (87), Expect = 0.027 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVT--KIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YVKNL + + E+++ F G +T K+++ + G + FGFV F+ A KAV Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM---EGGRSKGFGFVCFSSPEEATKAVT- 351 Query: 476 SEKYEIDGQVLEVSMAKPL 420 E++G+++ KPL Sbjct: 352 ----EMNGRIV---ATKPL 363 Score = 35.0 bits (79), Expect = 0.23 Identities = 17/60 (28%), Positives = 33/60 (55%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 V I++KNL +++ + + D F G + + + G K +GFVHF + +A +A++ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK-GYGFVHFETQEAAERAIE 156
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.4 bits (119), Expect = 5e-06 Identities = 25/89 (28%), Positives = 46/89 (51%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A + +Y+KN E++ E++KDLF G + + ++G + FGFV F A K Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 AV E++G+ + V A+ +++ + Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTE 275 Score = 38.1 bits (87), Expect = 0.027 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVT--KIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YVKNL + + E+++ F G +T K+++ + G + FGFV F+ A KAV Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM---EGGRSKGFGFVCFSSPEEATKAVT- 351 Query: 476 SEKYEIDGQVLEVSMAKPL 420 E++G+++ KPL Sbjct: 352 ----EMNGRIV---ATKPL 363 Score = 35.0 bits (79), Expect = 0.23 Identities = 17/60 (28%), Positives = 33/60 (55%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 V I++KNL +++ + + D F G + + + G K +GFVHF + +A +A++ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK-GYGFVHFETQEAAERAIE 156
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 50.4 bits (119), Expect = 5e-06 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 2/88 (2%) Frame = -2 Query: 665 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVT--KIVLPPAKAGHKRDFGFVHFAERSSAL 492 +Q +Y+KNL ++V EK+K++F +G VT K++L P G R FGFV ++ AL Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP--QGMSRGFGFVAYSNPEEAL 386 Query: 491 KAVKGSEKYEIDGQVLEVSMAKPLSDKK 408 +A+ I + L +++A+ D++ Sbjct: 387 RALSEMNGKMIGRKPLYIALAQRKEDRR 414 Score = 50.4 bits (119), Expect = 5e-06 Identities = 25/90 (27%), Positives = 49/90 (54%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSAL 492 P + +YVKNLP+ + +++++ F G ++ V+ ++G+ R FGFV+F +A Sbjct: 224 PTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAA 283 Query: 491 KAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 AV+ + VL V A+ S+++ + Sbjct: 284 SAVEKMNGISLGDDVLYVGRAQKKSEREEE 313 Score = 32.0 bits (71), Expect = 2.0 Identities = 14/56 (25%), Positives = 27/56 (48%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 I++KNL ++ + + + F G + + G + +GFV F + SA A+ Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAI 193
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 50.4 bits (119), Expect = 5e-06 Identities = 25/82 (30%), Positives = 45/82 (54%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +YV NLP +V +++V+D+F +G + + + K+G F FV F + A AV+ + Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAEDAVRARD 67 Query: 470 KYEIDGQVLEVSMAKPLSDKKP 405 YE DG+ + V + + + P Sbjct: 68 GYEFDGRRIRVEFTRGVGPRGP 89
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 50.1 bits (118), Expect = 7e-06 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHG-EVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 I+VKNLP +++ + + F G +VT + L PA R GFV + A +AVK Sbjct: 7 IFVKNLPPTITEAEFRKHFSAEGRQVTDVKLIPA-----RHIGFVGYKSAEDAARAVKYF 61 Query: 473 EKYEIDGQVLEVSMAKPLSDKKPDH 399 + I + V +AKP++D KP H Sbjct: 62 NRSFIRMSRISVDIAKPIADSKPQH 86 Score = 43.9 bits (102), Expect = 5e-04 Identities = 25/81 (30%), Positives = 40/81 (49%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A Q + VKNLP V+K++V+ LF +G++ + +P R F F F+ AL Sbjct: 700 ANQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALN 759 Query: 488 AVKGSEKYEIDGQVLEVSMAK 426 A + I G+ L + A+ Sbjct: 760 AFNSLKDTHILGRRLVIDFAQ 780 Score = 35.8 bits (81), Expect = 0.14 Identities = 17/70 (24%), Positives = 38/70 (54%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 ++++NL V+++ V++ F G + ++ +P GH + F + + + +SAL A Sbjct: 310 LFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASALAA----- 364 Query: 470 KYEIDGQVLE 441 ++ DG V + Sbjct: 365 -FQTDGTVFQ 373 Score = 34.7 bits (78), Expect = 0.30 Identities = 15/34 (44%), Positives = 26/34 (76%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPA 552 TI VKN+ +N + E+++ LFE HG V ++++PP+ Sbjct: 490 TILVKNI-KNTTIEELRTLFEEHGTVLRVLMPPS 522
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 50.1 bits (118), Expect = 7e-06 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Frame = -2 Query: 719 WAEPKGXXXXXXXXXSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGH 540 WAEP+ + VK +YV+NL + S+E ++ F + P A Sbjct: 215 WAEPE-----VEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERV 262 Query: 539 K--RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 420 K RD+ FVHF+ R A++A+K +DG +EV++AKP+ Sbjct: 263 KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304 Score = 35.4 bits (80), Expect = 0.18 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I++ LP ++ ++++ L E G++ ++ L G+ R + FV F+ + A A+K Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQEAKNAIKQLN 117 Query: 470 KYEI-DGQVLEV 438 YEI G++L V Sbjct: 118 NYEIRTGRLLGV 129
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 50.1 bits (118), Expect = 7e-06 Identities = 26/80 (32%), Positives = 44/80 (55%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 Q KT++V+ L E+ ++E +++ FE G ++ ++ G + FGFV F+ A A Sbjct: 551 QSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 608 Query: 482 KGSEKYEIDGQVLEVSMAKP 423 + E EIDG + + AKP Sbjct: 609 EAMEDGEIDGNKVTLDFAKP 628 Score = 43.9 bits (102), Expect = 5e-04 Identities = 21/73 (28%), Positives = 44/73 (60%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +T++VKNLP V+++++K++FE EV ++ K G + ++ F + A KA++ Sbjct: 371 RTLFVKNLPYRVTEDEMKNVFENALEVRLVL---NKEGSSKGMAYIEFKTEAEAEKALEE 427 Query: 476 SEKYEIDGQVLEV 438 + E+DG+ + + Sbjct: 428 KQGTEVDGRAMVI 440 Score = 42.7 bits (99), Expect = 0.001 Identities = 22/78 (28%), Positives = 39/78 (50%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 KT+ V NL S+E +++LF+ + T I +P G + + FV F A +A+ Sbjct: 461 KTLIVNNLSYAASEETLQELFK---KATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNS 517 Query: 476 SEKYEIDGQVLEVSMAKP 423 EI+G+ + + + P Sbjct: 518 CNNTEIEGRAIRLEFSSP 535
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 7e-06 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%) Frame = -2 Query: 668 AAQVKT--------IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHF 513 AA+V+T ++VKN+ +++ EK+K+LF +G + + +G + FGFV + Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246 Query: 512 AERSSALKAVKGSEKYEIDGQVLEVSMAK 426 +A KAV IDG+VL V A+ Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275 Score = 38.9 bits (89), Expect = 0.016 Identities = 22/75 (29%), Positives = 39/75 (52%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IY+KNL E ++ EK+K+ F G +++ + + G + FG V F+ A KAV Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV-MMEVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 470 KYEIDGQVLEVSMAK 426 + + L V++ + Sbjct: 363 GRIVGSKPLHVTLGQ 377
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 7e-06 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%) Frame = -2 Query: 668 AAQVKT--------IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHF 513 AA+V+T ++VKN+ +++ EK+K+LF +G + + +G + FGFV + Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246 Query: 512 AERSSALKAVKGSEKYEIDGQVLEVSMAK 426 +A KAV IDG+VL V A+ Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275 Score = 38.9 bits (89), Expect = 0.016 Identities = 22/75 (29%), Positives = 39/75 (52%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IY+KNL E ++ EK+K+ F G +++ + + G + FG V F+ A KAV Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV-MMEVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 470 KYEIDGQVLEVSMAK 426 + + L V++ + Sbjct: 363 GRIVGSKPLHVTLGQ 377
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 7e-06 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%) Frame = -2 Query: 668 AAQVKT--------IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHF 513 AA+V+T ++VKN+ +++ EK+K+LF +G + + +G + FGFV + Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246 Query: 512 AERSSALKAVKGSEKYEIDGQVLEVSMAK 426 +A KAV IDG+VL V A+ Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275 Score = 39.3 bits (90), Expect = 0.012 Identities = 22/75 (29%), Positives = 39/75 (52%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IY+KNL E ++ EK+K+ F G +++ + + G + FG V F+ A KAV Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV-MMEVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 470 KYEIDGQVLEVSMAK 426 + + L V++ + Sbjct: 363 GRVVGSKPLHVTLGQ 377
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 7e-06 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%) Frame = -2 Query: 668 AAQVKT--------IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHF 513 AA+V+T ++VKN+ +++ EK+K+LF +G + + +G + FGFV + Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246 Query: 512 AERSSALKAVKGSEKYEIDGQVLEVSMAK 426 +A KAV IDG+VL V A+ Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275 Score = 38.9 bits (89), Expect = 0.016 Identities = 22/75 (29%), Positives = 39/75 (52%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IY+KNL E ++ EK+K+ F G +++ + + G + FG V F+ A KAV Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV-MMEVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 470 KYEIDGQVLEVSMAK 426 + + L V++ + Sbjct: 363 GRIVGSKPLHVTLGQ 377
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 7e-06 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%) Frame = -2 Query: 668 AAQVKT--------IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHF 513 AA+V+T ++VKN+ +++ EK+K+LF +G + + +G + FGFV + Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246 Query: 512 AERSSALKAVKGSEKYEIDGQVLEVSMAK 426 +A KAV IDG+VL V A+ Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275 Score = 38.9 bits (89), Expect = 0.016 Identities = 22/75 (29%), Positives = 39/75 (52%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IY+KNL E ++ EK+K+ F G +++ + + G + FG V F+ A KAV Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV-MMEVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 470 KYEIDGQVLEVSMAK 426 + + L V++ + Sbjct: 363 GRIVGSKPLHVTLGQ 377
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 7e-06 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%) Frame = -2 Query: 668 AAQVKT--------IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHF 513 AA+V+T ++VKN+ +++ EK+K+LF +G + + +G + FGFV + Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246 Query: 512 AERSSALKAVKGSEKYEIDGQVLEVSMAK 426 +A KAV IDG+VL V A+ Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275 Score = 38.9 bits (89), Expect = 0.016 Identities = 22/75 (29%), Positives = 39/75 (52%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IY+KNL E ++ EK+K+ F G +++ + + G + FG V F+ A KAV Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV-MMEVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 470 KYEIDGQVLEVSMAK 426 + + L V++ + Sbjct: 363 GRIVGSKPLHVTLGQ 377
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 50.1 bits (118), Expect = 7e-06 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Frame = -2 Query: 719 WAEPKGXXXXXXXXXSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGH 540 WAEP+ + VK +YV+NL + S+E ++ F + P A Sbjct: 215 WAEPE-----VEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERV 262 Query: 539 K--RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 420 K RD+ FVHF+ R A++A+K +DG +EV++AKP+ Sbjct: 263 KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304 Score = 35.4 bits (80), Expect = 0.18 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I++ LP ++ ++++ L E G++ ++ + G+ R + FV F+ + A A+K Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLN 117 Query: 470 KYEI-DGQVLEV 438 YEI +G++L V Sbjct: 118 NYEIRNGRLLGV 129
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 49.7 bits (117), Expect = 9e-06 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Frame = -2 Query: 719 WAEPKGXXXXXXXXXSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGH 540 WAEP+ + VK +YV+NL + S+E ++ F + P A Sbjct: 215 WAEPE-----VEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERV 262 Query: 539 K--RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 420 K RD+ FVHF+ R A++A+K +DG +EV++AKP+ Sbjct: 263 KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304 Score = 34.7 bits (78), Expect = 0.30 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I++ LP ++ ++++ L E G++ ++ + G+ R + FV F+ + A A+K Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAIKQLN 117 Query: 470 KYEI-DGQVLEV 438 YEI +G++L V Sbjct: 118 NYEIRNGRLLGV 129
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 49.7 bits (117), Expect = 9e-06 Identities = 24/83 (28%), Positives = 46/83 (55%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +YVKNL E+ + + +K+ F +G++T V+ G + FGFV+F A +AV+ Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276 Query: 470 KYEIDGQVLEVSMAKPLSDKKPD 402 ++ D + V A+ S+++ + Sbjct: 277 GHKFDDKEWYVGRAQKKSERETE 299 Score = 46.2 bits (108), Expect = 1e-04 Identities = 27/85 (31%), Positives = 44/85 (51%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 Q +YVKNL ++S EK+K++F G VT + G + GFV FA A +A+ Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375 Query: 482 KGSEKYEIDGQVLEVSMAKPLSDKK 408 I+ + L V++A+ D++ Sbjct: 376 SQLSGKMIESKPLYVAIAQRKEDRR 400 Score = 41.2 bits (95), Expect = 0.003 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 I++KNL E++ + + D F G + + +G + +GFV +A SA KA++ Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIE 182
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 49.7 bits (117), Expect = 9e-06 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 KT++VK L E+ ++E +K+ F+ G V ++ + G + FGFV F A A + Sbjct: 571 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 628 Query: 476 SEKYEIDGQVLEVSMAKP 423 E EIDG + + AKP Sbjct: 629 MEDGEIDGNKVTLDWAKP 646 Score = 43.1 bits (100), Expect = 9e-04 Identities = 21/82 (25%), Positives = 45/82 (54%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 + + KT+ + NL + ++E ++++FE + T I +P + G + + F+ FA A + Sbjct: 481 SGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKE 537 Query: 488 AVKGSEKYEIDGQVLEVSMAKP 423 A+ K EI+G+ + + + P Sbjct: 538 ALNSCNKREIEGRAIRLELQGP 559 Score = 39.7 bits (91), Expect = 0.009 Identities = 19/73 (26%), Positives = 40/73 (54%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +T+ KNLP V+++++K++FE E+ + +K G + ++ F + A K + Sbjct: 392 RTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIEFKTEADAEKTFEE 447 Query: 476 SEKYEIDGQVLEV 438 + EIDG+ + + Sbjct: 448 KQGTEIDGRSISL 460
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 49.7 bits (117), Expect = 9e-06 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Frame = -2 Query: 719 WAEPKGXXXXXXXXXSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGH 540 WAEP+ + VK +YV+NL + S+E ++ F + P A Sbjct: 215 WAEPE-----VEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERV 262 Query: 539 K--RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 420 K RD+ FVHF+ R A++A+K +DG +EV++AKP+ Sbjct: 263 KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304 Score = 34.7 bits (78), Expect = 0.30 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I++ LP ++ ++++ L E G++ ++ + G+ R + FV F+ + A A+K Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLN 117 Query: 470 KYEI-DGQVLEV 438 YEI +G++L V Sbjct: 118 NYEIRNGRLLGV 129
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 49.7 bits (117), Expect = 9e-06 Identities = 25/89 (28%), Positives = 45/89 (50%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A + +Y+KN E V E +K+LF G+ + + G + FGFV + + A K Sbjct: 187 AKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANK 246 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 AV+ EI G+++ V A+ +++ + Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAE 275 Score = 42.0 bits (97), Expect = 0.002 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVT--KIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +Y+KNL + + EK++ F G +T K++L + G + FGFV F+ A KAV Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRSKGFGFVCFSSPEEATKAVTE 352 Query: 476 SEKYEIDGQVLEVSMAKPLSDKK 408 + + L V++A+ ++K Sbjct: 353 MNGRIVGSKPLYVALAQRKEERK 375 Score = 33.1 bits (74), Expect = 0.88 Identities = 16/60 (26%), Positives = 32/60 (53%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 V +++KNL +++ + + D F G + + + G K + FVHF + +A KA++ Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK-GYAFVHFETQEAADKAIE 156
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 49.7 bits (117), Expect = 9e-06 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 KT++VK L E+ ++E +K+ F+ G V ++ + G + FGFV F A A + Sbjct: 573 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 630 Query: 476 SEKYEIDGQVLEVSMAKP 423 E EIDG + + AKP Sbjct: 631 MEDGEIDGNKVTLDWAKP 648 Score = 43.1 bits (100), Expect = 9e-04 Identities = 21/82 (25%), Positives = 45/82 (54%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 + + KT+ + NL + ++E ++++FE + T I +P + G + + F+ FA A + Sbjct: 483 SGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKE 539 Query: 488 AVKGSEKYEIDGQVLEVSMAKP 423 A+ K EI+G+ + + + P Sbjct: 540 ALNSCNKREIEGRAIRLELQGP 561 Score = 39.7 bits (91), Expect = 0.009 Identities = 19/73 (26%), Positives = 40/73 (54%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +T+ KNLP V+++++K++FE E+ + +K G + ++ F + A K + Sbjct: 394 RTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIEFKTEADAEKTFEE 449 Query: 476 SEKYEIDGQVLEV 438 + EIDG+ + + Sbjct: 450 KQGTEIDGRSISL 462
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 49.7 bits (117), Expect = 9e-06 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 KT++VK L E+ ++E +K+ F+ G V ++ + G + FGFV F A A + Sbjct: 572 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 629 Query: 476 SEKYEIDGQVLEVSMAKP 423 E EIDG + + AKP Sbjct: 630 MEDGEIDGNKVTLDWAKP 647 Score = 43.1 bits (100), Expect = 9e-04 Identities = 21/82 (25%), Positives = 45/82 (54%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 + + KT+ + NL + ++E ++++FE + T I +P + G + + F+ FA A + Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKE 538 Query: 488 AVKGSEKYEIDGQVLEVSMAKP 423 A+ K EI+G+ + + + P Sbjct: 539 ALNSCNKREIEGRAIRLELQGP 560 Score = 39.7 bits (91), Expect = 0.009 Identities = 19/73 (26%), Positives = 40/73 (54%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +T+ KNLP V+++++K++FE E+ + +K G + ++ F + A K + Sbjct: 393 RTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIEFKTEADAEKTFEE 448 Query: 476 SEKYEIDGQVLEV 438 + EIDG+ + + Sbjct: 449 KQGTEIDGRSISL 461
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 48.9 bits (115), Expect = 2e-05 Identities = 21/75 (28%), Positives = 41/75 (54%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +Y+KN E++ +++K++F G + + +G R FGFV++ A KAV Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252 Query: 470 KYEIDGQVLEVSMAK 426 E++G+++ V A+ Sbjct: 253 GKEVNGRMVYVGRAQ 267 Score = 43.5 bits (101), Expect = 7e-04 Identities = 23/81 (28%), Positives = 43/81 (53%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +YVKNL + + ++++ F +G +T + + GH + FGFV F+ A KAV Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 470 KYEIDGQVLEVSMAKPLSDKK 408 + + L V++A+ ++K Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375 Score = 36.2 bits (82), Expect = 0.10 Identities = 16/60 (26%), Positives = 34/60 (56%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 V +++KNL +++ + + D F G++ + + G R +GFVHF + +A +A++ Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQ 156
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 48.9 bits (115), Expect = 2e-05 Identities = 26/83 (31%), Positives = 45/83 (54%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I++KNL ++ + + D F V G++ + + G + FGFVHF E +A +A+ Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 186 Query: 470 KYEIDGQVLEVSMAKPLSDKKPD 402 ++GQ E+ +A LS K+ D Sbjct: 187 GMLLNGQ--EIYVAPHLSRKERD 207 Score = 47.8 bits (112), Expect = 3e-05 Identities = 24/85 (28%), Positives = 44/85 (51%) Frame = -2 Query: 665 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 486 A +YVKN+ + E+ ++LF G + L G + FGFV++ + A+KA Sbjct: 215 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 274 Query: 485 VKGSEKYEIDGQVLEVSMAKPLSDK 411 V+ E++G+ L V A+ +++ Sbjct: 275 VEALNDSELNGEKLYVGRAQKKNER 299 Score = 46.2 bits (108), Expect = 1e-04 Identities = 23/75 (30%), Positives = 43/75 (57%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 ++VKNL ++V EK+++ F +G +T + + G + FGFV F+ A KA+ Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 382 Query: 470 KYEIDGQVLEVSMAK 426 + + G+ L V++A+ Sbjct: 383 QQIVAGKPLYVAIAQ 397
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 48.9 bits (115), Expect = 2e-05 Identities = 24/89 (26%), Positives = 46/89 (51%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A + +Y+KN E++ E++K+LF G + + ++G + FGFV F A K Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 AV E++G+ + V A+ +++ + Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTE 275 Score = 38.1 bits (87), Expect = 0.027 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVT--KIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YVKNL + + E+++ F G +T K+++ + G + FGFV F+ A KAV Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM---EGGRSKGFGFVCFSSPEEATKAVT- 351 Query: 476 SEKYEIDGQVLEVSMAKPL 420 E++G+++ KPL Sbjct: 352 ----EMNGRIV---ATKPL 363 Score = 35.0 bits (79), Expect = 0.23 Identities = 17/60 (28%), Positives = 33/60 (55%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 V I++KNL +++ + + D F G + + + G K +GFVHF + +A +A++ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK-GYGFVHFETQEAAERAIE 156
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 48.9 bits (115), Expect = 2e-05 Identities = 24/89 (26%), Positives = 46/89 (51%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A + +Y+KN E++ E++K+LF G + + ++G + FGFV F A K Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 AV E++G+ + V A+ +++ + Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTE 275 Score = 38.1 bits (87), Expect = 0.027 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVT--KIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YVKNL + + E+++ F G +T K+++ + G + FGFV F+ A KAV Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM---EGGRSKGFGFVCFSSPEEATKAVT- 351 Query: 476 SEKYEIDGQVLEVSMAKPL 420 E++G+++ KPL Sbjct: 352 ----EMNGRIV---ATKPL 363 Score = 35.0 bits (79), Expect = 0.23 Identities = 17/60 (28%), Positives = 33/60 (55%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 V I++KNL +++ + + D F G + + + G K +GFVHF + +A +A++ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK-GYGFVHFETQEAAERAIE 156
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 48.5 bits (114), Expect = 2e-05 Identities = 29/86 (33%), Positives = 46/86 (53%) Frame = -2 Query: 665 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 486 A+V IYVKN+ V++E+++ F G +T L + G + FGFV F+ A+ A Sbjct: 301 AKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDA 360 Query: 485 VKGSEKYEIDGQVLEVSMAKPLSDKK 408 VK G+ L V++A+ D+K Sbjct: 361 VKTFHGQMFHGKPLYVAIAQKKEDRK 386 Score = 44.7 bits (104), Expect = 3e-04 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 V ++VKNLPE+V+ ++D+F+ G + + + G R +GFV F + +A A++ Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQ 170 Query: 479 GSEKYEIDGQVLEVSMAKPLSDK-KPDHSF 393 + + + V +D+ KP+ + Sbjct: 171 TLNSTIVADKEIYVGKFMKKTDRVKPEEKY 200
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 48.5 bits (114), Expect = 2e-05 Identities = 23/78 (29%), Positives = 43/78 (55%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 +KT++V+++P++V+ E++ D F + V+ R FGFV FA +A+ Sbjct: 25 MKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALA 84 Query: 479 GSEKYEIDGQVLEVSMAK 426 + K + +G +L V +AK Sbjct: 85 KARKTKFNGHILRVDIAK 102 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = -2 Query: 650 IYVKNLPENVSKE-KVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 + ++N+P + K+K +F +G V + +P + G F FV + S+ A++ + Sbjct: 149 LIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIALENT 208 Query: 473 EKYEIDGQVLEVSMA 429 + +IDG+ + V A Sbjct: 209 KDLKIDGRKVAVDFA 223
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 48.5 bits (114), Expect = 2e-05 Identities = 20/83 (24%), Positives = 45/83 (54%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +Y+KN E++ ++++++F G + + +G R FGFV++ A KAV Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252 Query: 470 KYEIDGQVLEVSMAKPLSDKKPD 402 E++G+++ V A+ +++ + Sbjct: 253 GKEVNGRMIYVGRAQKRIERQSE 275 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/81 (28%), Positives = 43/81 (53%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +YVKNL + + ++++ F +G +T + + GH + FGFV F+ A KAV Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 470 KYEIDGQVLEVSMAKPLSDKK 408 + + L V++A+ ++K Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375 Score = 36.2 bits (82), Expect = 0.10 Identities = 17/60 (28%), Positives = 32/60 (53%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 V +++KNL E++ + + D F G + + + G R +GFVHF +A +A++ Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQ 156
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/79 (35%), Positives = 36/79 (45%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 + VKNLP + +E+ + LF G +T L K G R FGF+ F A KA K Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63 Query: 470 KYEIDGQVLEVSMAKPLSD 414 K ID + V K D Sbjct: 64 KSFIDTSRITVEFCKSFGD 82 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 4/80 (5%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK--AGH--KRDFGFVHFAERSSALKA 486 T+++KNL + ++EK+K++F G V + K AG FGFV + + A KA Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790 Query: 485 VKGSEKYEIDGQVLEVSMAK 426 +K + + +DG LEV +++ Sbjct: 791 LKQLQGHVVDGHKLEVRISE 810 Score = 37.0 bits (84), Expect = 0.061 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPP--AKAGHKRDFGFVHFAERSSALKA 486 I V+N+P ++++LF GE+ + LP G R FGFV F + A +A Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 48.1 bits (113), Expect = 3e-05 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKA-GHKRDFGFVHFAERSSALKAVKG 477 TI V NL E+ + +++LF G +++I L K G + F F+ F R A +A+ G Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299 Query: 476 SEKYEIDGQVLEVSMAKP 423 + D +L V AKP Sbjct: 300 VSGFGYDHLILNVEWAKP 317
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 48.1 bits (113), Expect = 3e-05 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKA-GHKRDFGFVHFAERSSALKAVKG 477 TI V NL E+ + +++LF G +++I L K G + F F+ F R A +A+ G Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299 Query: 476 SEKYEIDGQVLEVSMAKP 423 + D +L V AKP Sbjct: 300 VSGFGYDHLILNVEWAKP 317
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 47.8 bits (112), Expect = 3e-05 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV NLP +V +++ LF HG+V V+ + G R FGFV + S A+ Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 210 Query: 473 EKYEIDGQVLEVSMAKPLSDKKPDHSF 393 + +DG+ + V++A +++P +F Sbjct: 211 DGQTLDGRAVRVNVA----EERPRRAF 233 Score = 43.9 bits (102), Expect = 5e-04 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHG--EVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 ++V NLP +V EK+ +F+ G E+ +++ + R FGFV + A KAV+ Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYN-RETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 476 SEKYEIDGQVLEVSMAKP 423 Y++DG+ L V+ A P Sbjct: 116 LNGYDMDGRQLTVNKAAP 133
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 47.8 bits (112), Expect = 3e-05 Identities = 20/75 (26%), Positives = 40/75 (53%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +Y+KN E++ ++++++F G + + G R FGFV++ A KAV Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252 Query: 470 KYEIDGQVLEVSMAK 426 E++G+++ V A+ Sbjct: 253 GKEVNGRMIYVGRAQ 267 Score = 43.5 bits (101), Expect = 7e-04 Identities = 23/81 (28%), Positives = 43/81 (53%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +YVKNL + + ++++ F +G +T + + GH + FGFV F+ A KAV Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 470 KYEIDGQVLEVSMAKPLSDKK 408 + + L V++A+ ++K Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375 Score = 36.6 bits (83), Expect = 0.080 Identities = 17/60 (28%), Positives = 33/60 (55%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 V +++KNL E++ + + D F G + + + G R +GFVHF + +A +A++ Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQ 156
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 47.4 bits (111), Expect = 5e-05 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 + V LP +++ +KD F GEV + V K GH + FGFV F E + +K + S Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM--S 163 Query: 473 EKYEIDGQVLEVSMAKPLSDKKPDHSFK 390 +++ IDG+ + + P S + PD + Sbjct: 164 QRHMIDGRWCDCKL--PNSKQSPDEPLR 189
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 47.4 bits (111), Expect = 5e-05 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 4/91 (4%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHF---AERSSALKA 486 +IYV NL +VS+ + +F +G V ++ LP + G R FGFV AE ++A++A Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 485 VKGSEKYEIDGQVLEVSMAKPLSDKKPDHSF 393 + G+E G+ L+V+ AKP ++ SF Sbjct: 62 LDGAEWM---GRDLKVNKAKPRENRSGGGSF 89
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 46.6 bits (109), Expect = 8e-05 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 474 + V LP+N+++E+++ LF GEV L K AGH +GFV++ A +A+ Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81 Query: 473 EKYEIDGQVLEVSMAKPLSD 414 + + ++VS A+P S+ Sbjct: 82 NGLRLQSKTIKVSYARPSSE 101 Score = 33.9 bits (76), Expect = 0.52 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGE-VTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 +Y+ LP ++++ V+D+F G + VL G R F+ F +RS A +A+ Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 46.6 bits (109), Expect = 8e-05 Identities = 23/89 (25%), Positives = 44/89 (49%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A + +Y+KN E++ E++K+ F +G + + G R FGFV F A K Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQK 246 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 AV +++G+ + V A+ +++ + Sbjct: 247 AVDDMNGKDLNGKAIFVGRAQKKVERQTE 275 Score = 38.1 bits (87), Expect = 0.027 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVT--KIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YVKNL + + E+++ F G +T K+++ + G + FGFV F+ A KAV Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMM---EGGRSKGFGFVCFSSPEEATKAVT- 351 Query: 476 SEKYEIDGQVLEVSMAKPL 420 E++G+++ KPL Sbjct: 352 ----EMNGRIV---ATKPL 363 Score = 34.7 bits (78), Expect = 0.30 Identities = 17/59 (28%), Positives = 32/59 (54%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 V I++KNL +++ + + D F G + + + G K +GFVHF + +A +A+ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK-GYGFVHFETQEAAERAI 155
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 46.2 bits (108), Expect = 1e-04 Identities = 22/75 (29%), Positives = 43/75 (57%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I+V NL N + E+++ LF +G++++ + ++FGFVH +S A +A++ Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIV-------KNFGFVHMDSKSEADEAIQNLH 56 Query: 470 KYEIDGQVLEVSMAK 426 Y ++G + V M+K Sbjct: 57 HYMLNGMAMNVEMSK 71
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 46.2 bits (108), Expect = 1e-04 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 17/104 (16%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 + ++NL S++ +K +F +G V ++ +P G R F FV F A KA+KG+ Sbjct: 115 LIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGAN 174 Query: 470 KYEIDGQVLEVSMA-----------------KPLSDKKPDHSFK 390 EI G+ + V A K SD+KP S K Sbjct: 175 MKEIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSSDRKPKESGK 218 Score = 30.8 bits (68), Expect = 4.4 Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEV--TKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 KT++++NL + +E + ++ + G++ ++VL P H + F F + +A K + Sbjct: 324 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP-DTEHSKGCAFAQFMTQEAAQKCL 382 Query: 482 KGSEK------YEIDGQVLEVSMA 429 + ++DG+ L+V +A Sbjct: 383 AAASPEAEGGGLKLDGRQLKVDLA 406
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 IYV N+P + +++ LF HG+V V+ + G R FGFV A + A+ Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANL 291 Query: 473 EKYEIDGQVLEVSMAKPLS 417 + +DG+ + V++A+ S Sbjct: 292 DGQSLDGRTIRVNVAEDRS 310 Score = 41.6 bits (96), Expect = 0.002 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 4/91 (4%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHG--EVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 ++V NLP +V E + LFE G E+ +++ R FGFV + A KAV+ Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYN-RDTDQSRGFGFVTMSTVEEAEKAVEM 196 Query: 476 SEKYEIDGQVLEVSMAKPLSDK--KPDHSFK 390 +Y+++G++L V+ A ++ +P +F+ Sbjct: 197 YNRYDVNGRLLTVNKAARRGERPERPPRTFE 227
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 I+V NLP + + +LFE G V + V+ G R FGFV + + A + Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 473 EKYEIDGQVLEVSMAKPLSDKKPDHSFK 390 YE+DG+ L V+ P +K+ + SF+ Sbjct: 149 NGYELDGRALRVNSGPP-PEKRENSSFR 175
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/83 (26%), Positives = 45/83 (54%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ LP + +KE+++D+ + HG V + L +AG + +V + S A +AV + Sbjct: 803 LFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 862 Query: 470 KYEIDGQVLEVSMAKPLSDKKPD 402 I V++V+++ P K P+ Sbjct: 863 GMTIRENVIKVAISNPPQRKVPE 885 Score = 45.1 bits (105), Expect = 2e-04 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVK--DLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 T++V NLP ++ + +VK LFEV GEV +I + G R + +V F E SA +A++ Sbjct: 705 TVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQALE 764 Query: 479 GSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 390 K ++G+ + VS P DK + FK Sbjct: 765 LDRKI-VEGRPMFVS---PCVDKSKNPDFK 790
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/74 (33%), Positives = 38/74 (51%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 + ++NL S++ +K +F G V ++ +P G R FGFV F A KA+KG Sbjct: 115 LIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMN 174 Query: 470 KYEIDGQVLEVSMA 429 EI G+ + V A Sbjct: 175 MKEIKGRTVAVDWA 188 Score = 33.9 bits (76), Expect = 0.52 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 8/84 (9%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEV--TKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 KT++++NL + +E++ +L + GE+ +IVL P H + F F + +A K + Sbjct: 334 KTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHP-DTEHSKGCAFAQFMTQEAAQKCL 392 Query: 482 KGSEK------YEIDGQVLEVSMA 429 + ++DG+ L+V +A Sbjct: 393 LAASPENEAGGLKLDGRQLKVDLA 416
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 474 + V LP+N+++++++ LF GEV L K AGH +GFV++ A +A+ Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 Query: 473 EKYEIDGQVLEVSMAKPLSD 414 + + ++VS A+P S+ Sbjct: 82 NGLRLQSKTIKVSYARPSSE 101 Score = 33.9 bits (76), Expect = 0.52 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGE-VTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 +Y+ LP ++++ V+D+F G + VL G R F+ F +RS A +A+ Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 ++V NLP NV ++ LFE G V + V+ G R FGFV + S A + Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 473 EKYEIDGQVLEVSMAKP 423 YE+DG+ L V+ P Sbjct: 153 NGYELDGRPLRVNAGPP 169 Score = 38.9 bits (89), Expect = 0.016 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV NL V ++ LF G+V + V+ +G + FGFV + A+K Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265 Query: 473 EKYEIDGQVLEVSMAK 426 + ++DG+ + VS A+ Sbjct: 266 DGADLDGRQIRVSEAE 281
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Frame = -2 Query: 653 TIYVKNLPENVSKE--KVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 T++V NLP ++ + K++ LFE GEV +I + G R + +V F E SAL+A++ Sbjct: 723 TVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNRGDFRGYRYVEFKEEKSALQALE 782 Query: 479 GSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 390 K ++G+ + VS P DK + FK Sbjct: 783 MDRK-SVEGRPMFVS---PCVDKSKNPDFK 808 Score = 44.7 bits (104), Expect = 3e-04 Identities = 21/83 (25%), Positives = 45/83 (54%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ LP + +KE+++++ + HG V + L +AG + +V + S A +AV + Sbjct: 821 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 880 Query: 470 KYEIDGQVLEVSMAKPLSDKKPD 402 I V++V+++ P K P+ Sbjct: 881 GMTIKENVIKVAISNPPQRKVPE 903
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 44.7 bits (104), Expect = 3e-04 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Frame = -2 Query: 653 TIYVKNLPENVSKE--KVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 T++V NLP ++ + K++ LFE GEV +I + G R + +V F E SAL+A++ Sbjct: 705 TVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALE 764 Query: 479 GSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 390 K ++G+ + VS P DK + FK Sbjct: 765 MDRK-SVEGRPMFVS---PCVDKSKNPDFK 790 Score = 44.3 bits (103), Expect = 4e-04 Identities = 20/83 (24%), Positives = 45/83 (54%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ LP + +KE+++++ + HG V + L +AG + +V + S A +AV + Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 862 Query: 470 KYEIDGQVLEVSMAKPLSDKKPD 402 I +++V+++ P K P+ Sbjct: 863 GMTIKENIIKVAISNPPQRKVPE 885
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV NLP +V +++ LF HG+V + V+ + G R FGFV ++ +A+ Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305 Query: 473 EKYEIDGQVLEVSMAK 426 + ++G+ + V++A+ Sbjct: 306 DGQNLEGRAIRVNVAE 321
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 44.7 bits (104), Expect = 3e-04 Identities = 21/89 (23%), Positives = 46/89 (51%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A + +Y+KN ++++ E++K++F +G + + G + FGFV F A K Sbjct: 187 AKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQK 246 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 AV +++G+ + V A+ +++ + Sbjct: 247 AVDEMNGKDMNGKSMFVGRAQKKVERQTE 275 Score = 37.0 bits (84), Expect = 0.061 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVT--KIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YVKNL + + E+++ F G +T K+++ + G + FGFV F+ A KAV Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMM---EGGRSKGFGFVCFSSPEEATKAVT- 351 Query: 476 SEKYEIDGQVLEVSMAKPL 420 E++G+++ KPL Sbjct: 352 ----EMNGRIV---ATKPL 363 Score = 34.7 bits (78), Expect = 0.30 Identities = 17/59 (28%), Positives = 32/59 (54%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 V I++KNL +++ + + D F G + + + G K +GFVHF + +A +A+ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK-GYGFVHFETQEAAERAI 155
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 43.9 bits (102), Expect = 5e-04 Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAV 483 +++++V N+P ++E++KD+F G V ++ + G + +GF + ++ +AL A+ Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74 Query: 482 KGSEKYEIDGQVLEVSMAKPLSDKK 408 + E G+ L V A +K+ Sbjct: 75 RNLNGREFSGRALRVDNAASEKNKE 99
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 43.9 bits (102), Expect = 5e-04 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKAVK 480 +TIYV L + V++ + + F G++ I +P + R F F+ + + A A+ Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65 Query: 479 GSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 390 E+ G+ + V++AKP+ K + SFK Sbjct: 66 NMNDSELCGRTIRVNLAKPVRVK--EDSFK 93
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 43.9 bits (102), Expect = 5e-04 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPP-AKAGHKRDFGFVHFAERSSA 495 P+ T+++ NL N ++ + +LF HGEV + +P + + FG+V F+ A Sbjct: 262 PSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321 Query: 494 LKAVKGSEKYEIDGQVLEVSMAKP 423 KA+ + ID + + + + P Sbjct: 322 KKALDALQGEYIDNRPVRLDFSSP 345 Score = 37.4 bits (85), Expect = 0.047 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFE-VHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 TI+V L ++ E +K FE + G + V+ R +G+V F +S A KA++ Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228 Query: 476 SEKYEIDGQVL--EVSMAKP 423 + EIDG+ + ++S +KP Sbjct: 229 MQGKEIDGRPINCDMSTSKP 248
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 43.9 bits (102), Expect = 5e-04 Identities = 25/79 (31%), Positives = 35/79 (44%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 + VKNLP + +E+ + LF G +T L K G R FGF+ F A A+ Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHFH 63 Query: 470 KYEIDGQVLEVSMAKPLSD 414 + ID + V K D Sbjct: 64 RSFIDTTRITVEFCKSFGD 82 Score = 39.7 bits (91), Expect = 0.009 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 4/80 (5%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK--AGH--KRDFGFVHFAERSSALKA 486 T+++KNL + ++E +K +F G + + K AG FGFV + + A KA Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782 Query: 485 VKGSEKYEIDGQVLEVSMAK 426 +K + + +DG LEV +++ Sbjct: 783 LKQLQGHTVDGHKLEVRISE 802 Score = 39.3 bits (90), Expect = 0.012 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPP--AKAGHKRDFGFVHFAERSSALKA 486 I V+N+P ++ ++++LF GE+ + LP G R FGFV F + A KA Sbjct: 826 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 882
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 43.9 bits (102), Expect = 5e-04 Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAV 483 +++++V N+P ++E++KD+F G V ++ + G + +GF + ++ +AL A+ Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74 Query: 482 KGSEKYEIDGQVLEVSMAKPLSDKK 408 + E G+ L V A +K+ Sbjct: 75 RNLNGREFSGRALRVDNAASEKNKE 99
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 43.9 bits (102), Expect = 5e-04 Identities = 26/75 (34%), Positives = 38/75 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IYV NLP ++ + V+D+F +G + I L + G F FV F + A AV G + Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYGRD 74 Query: 470 KYEIDGQVLEVSMAK 426 Y+ DG L V + Sbjct: 75 GYDYDGYRLRVEFPR 89
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 43.5 bits (101), Expect = 7e-04 Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAV 483 +++++V N+P ++E++KD+F G V ++ + G + +GF + ++ +AL A+ Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74 Query: 482 KGSEKYEIDGQVLEVSMAKPLSDKK 408 + E G+ L V A +K+ Sbjct: 75 RNLNGREFSGRALRVDNAASEKNKE 99
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 43.5 bits (101), Expect = 7e-04 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 IYV N+P ++ +++ +F HG+V V+ ++G R FGFV + + +A+ Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252 Query: 473 EKYEIDGQVLEVSMAK 426 + +DG+ + V+ A+ Sbjct: 253 DGQTLDGRTIRVNAAE 268 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHG--EVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 ++V NLP ++ E + LF+ G E+ +++ + R FGFV + A KAV+ Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYN-RETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 476 SEKYEIDGQVLEVSMAKP 423 +Y+++G++L V+ A P Sbjct: 158 YSQYDLNGRLLTVNKAAP 175
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 43.5 bits (101), Expect = 7e-04 Identities = 25/75 (33%), Positives = 38/75 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IYV NLP ++ + ++D+F +G + I L + G F FV F + A AV G + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYGRD 74 Query: 470 KYEIDGQVLEVSMAK 426 Y+ DG L V + Sbjct: 75 GYDYDGYRLRVEFPR 89
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 43.5 bits (101), Expect = 7e-04 Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAV 483 +++++V N+P ++E++KD+F G V ++ + G + +GF + ++ +AL A+ Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74 Query: 482 KGSEKYEIDGQVLEVSMAKPLSDKK 408 + E G+ L V A +K+ Sbjct: 75 RNLNGREFSGRALRVDNAASEKNKE 99
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 43.5 bits (101), Expect = 7e-04 Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAV 483 +++++V N+P ++E++KD+F G V ++ + G + +GF + ++ +AL A+ Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74 Query: 482 KGSEKYEIDGQVLEVSMAKPLSDKK 408 + E G+ L V A +K+ Sbjct: 75 RNLNGREFSGRALRVDNAASEKNKE 99
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 43.5 bits (101), Expect = 7e-04 Identities = 25/70 (35%), Positives = 35/70 (50%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 TI VKN+P S + + DLF HG++T+++LPPA G V F A +A K Sbjct: 418 TILVKNIPYGTSIQSLTDLFAPHGKLTRVLLPPAGT-----LGVVEFENHMDAGRAFKAL 472 Query: 473 EKYEIDGQVL 444 + VL Sbjct: 473 AYRRLGNAVL 482 Score = 39.7 bits (91), Expect = 0.009 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLP----PAKAGHK--RDFGFVHFAERSSALK 489 + VKNLP +K+ V++LF +G++ + LP P G + R F F+ F + A + Sbjct: 642 VLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAAR 701 Query: 488 AVKGSEKYEIDGQVLEVSMA 429 A++ + + G+ L + A Sbjct: 702 AMEALKHTHLLGRHLVLQWA 721 Score = 38.1 bits (87), Expect = 0.027 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = -2 Query: 557 PAKAGHKRD--FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 426 P + G K +GFV F + +A KA+K E +EIDG+ LEV A+ Sbjct: 572 PKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQ 617
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 43.5 bits (101), Expect = 7e-04 Identities = 25/75 (33%), Positives = 38/75 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IYV NLP ++ + ++D+F +G + I L + G F FV F + A AV G + Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYGRD 75 Query: 470 KYEIDGQVLEVSMAK 426 Y+ DG L V + Sbjct: 76 GYDYDGYRLRVEFPR 90
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 43.5 bits (101), Expect = 7e-04 Identities = 25/75 (33%), Positives = 38/75 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IYV NLP ++ + ++D+F +G + I L + G F FV F + A AV G + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYGRD 74 Query: 470 KYEIDGQVLEVSMAK 426 Y+ DG L V + Sbjct: 75 GYDYDGYRLRVEFPR 89
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 43.5 bits (101), Expect = 7e-04 Identities = 25/75 (33%), Positives = 38/75 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IYV NLP ++ + ++D+F +G + I L + G F FV F + A AV G + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYGRD 74 Query: 470 KYEIDGQVLEVSMAK 426 Y+ DG L V + Sbjct: 75 GYDYDGYRLRVEFPR 89
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 43.5 bits (101), Expect = 7e-04 Identities = 25/75 (33%), Positives = 38/75 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IYV NLP ++ + ++D+F +G + I L + G F FV F + A AV G + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYGRD 74 Query: 470 KYEIDGQVLEVSMAK 426 Y+ DG L V + Sbjct: 75 GYDYDGYRLRVEFPR 89
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 43.5 bits (101), Expect = 7e-04 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 ++V NLP +V + LFE G V + V+ G R FGFV + + A + Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 473 EKYEIDGQVLEVSMAKPLSDKKPDHSF 393 YEIDG+ + V+ A P K+ + SF Sbjct: 149 NGYEIDGRAIRVN-AGPAPAKRENSSF 174 Score = 38.5 bits (88), Expect = 0.021 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV NL V +K+LF G V V+ +G R FGFV ++ A+ Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268 Query: 473 EKYEIDGQVLEVSMAK 426 ++DG+ + VS A+ Sbjct: 269 NGVDLDGRSIRVSAAE 284
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 43.5 bits (101), Expect = 7e-04 Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAV 483 +++++V N+P ++E++KD+F G V ++ + G + +GF + ++ +AL A+ Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74 Query: 482 KGSEKYEIDGQVLEVSMAKPLSDKK 408 + E G+ L V A +K+ Sbjct: 75 RNLNGREFSGRALRVDNAASEKNKE 99
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 43.1 bits (100), Expect = 9e-04 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 T++V L + VS+E++K LF+ GE+ + +PP K GFV F R SA A+ Sbjct: 304 TVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKG-----CGFVQFVNRQSAEIAINQL 358 Query: 473 EKYEIDGQVLEVSMAK 426 + Y + + +S + Sbjct: 359 QGYPLGNSRIRLSWGR 374
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 43.1 bits (100), Expect = 9e-04 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 ++V NLP +V + LFE G V + V+ +G R FGFV + + A + Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 473 EKYEIDGQVLEVSMAKPLSDKKPDHSF 393 YEIDG+ + V+ A P K+ + SF Sbjct: 150 NGYEIDGRAIRVN-AGPAPAKRENSSF 175 Score = 38.5 bits (88), Expect = 0.021 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV NL V +K+LF G V V+ +G R FGFV ++ A+ Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269 Query: 473 EKYEIDGQVLEVSMAK 426 ++DG+ + VS A+ Sbjct: 270 NGIDLDGRSIRVSAAE 285
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 43.1 bits (100), Expect = 9e-04 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHFAERSSALKAVKGS 474 +++ L + +K+ +KD F GEV L G R FGFV F E S ++ V Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE-SESVDKVMDQ 157 Query: 473 EKYEIDGQVLEVSMAKPLSDKKP 405 ++++++G+V++ AK + K+P Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEP 180 Score = 36.2 bits (82), Expect = 0.10 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHFAERSSALKAV 483 VK I+V L + +EK+++ F GEV I LP K +R F F+ F E K + Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240 Query: 482 KGSEKYEIDGQ---VLEVSMAK 426 + +KY G ++V+M+K Sbjct: 241 E--KKYHNVGLSKCEIKVAMSK 260
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 43.1 bits (100), Expect = 9e-04 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHFAERSSALKAVKGS 474 +++ L + +K+ +KD F GEV L G R FGFV F E S ++ V Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE-SESVDKVMDQ 157 Query: 473 EKYEIDGQVLEVSMAKPLSDKKP 405 ++++++G+V++ AK + K+P Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEP 180 Score = 36.2 bits (82), Expect = 0.10 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHFAERSSALKAV 483 VK I+V L + +EK+++ F GEV I LP K +R F F+ F E K + Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240 Query: 482 KGSEKYEIDGQ---VLEVSMAK 426 + +KY G ++V+M+K Sbjct: 241 E--KKYHNVGLSKCEIKVAMSK 260
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 43.1 bits (100), Expect = 9e-04 Identities = 21/87 (24%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV +L N++++ ++ +FE G + I ++ ++ G + +GF+ F++ A KA++ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 473 EKYEIDGQVLEVSMAKPLSDKKPDHSF 393 +E+ G+ ++V +D SF Sbjct: 312 NGFELAGRPMKVGHVTERTDASSASSF 338
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 43.1 bits (100), Expect = 9e-04 Identities = 21/87 (24%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV +L N++++ ++ +FE G + I ++ ++ G + +GF+ F++ A KA++ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 473 EKYEIDGQVLEVSMAKPLSDKKPDHSF 393 +E+ G+ ++V +D SF Sbjct: 312 NGFELAGRPMKVGHVTERTDASSASSF 338
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 42.7 bits (99), Expect = 0.001 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 + V LP +++ +K+ F GEV + V K GH + FGFV F E + +K + S Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM--S 163 Query: 473 EKYEIDGQ 450 +++ IDG+ Sbjct: 164 QRHMIDGR 171
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 42.7 bits (99), Expect = 0.001 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFA---ERSSALKAVK 480 I +KNLP +K ++DLF G++ + LP R FGFV ++ E SA++A+K Sbjct: 721 ILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEALK 780 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVH---FAERSSALKAV 483 TI VKN+P S E+V+ LF HGEV K+++PP+ + V+ A R+ A K Sbjct: 502 TILVKNIPYGTSAEEVEKLFGEHGEVDKVLIPPSGTIAVVEMPVVNEARLAFRAIAYKRF 561 Query: 482 KGSEKY 465 KG Y Sbjct: 562 KGGILY 567
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 42.7 bits (99), Expect = 0.001 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKG 477 T+ V NL ++ +E+++DLF G + ++ L K G + F FV + +R A+KA Sbjct: 203 TLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDR 262 Query: 476 SEKYEIDGQVLEVSMAKP 423 + Y + +L +KP Sbjct: 263 LDGYGWNNLILRCEFSKP 280
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/75 (24%), Positives = 44/75 (58%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ NLP ++++++ LFE +G+V + + +++GFVH ++++A A++ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 56 Query: 470 KYEIDGQVLEVSMAK 426 Y++ G + V +K Sbjct: 57 HYKLHGVNINVEASK 71
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/75 (24%), Positives = 44/75 (58%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ NLP ++++++ LFE +G+V + + +++GFVH ++++A A++ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 56 Query: 470 KYEIDGQVLEVSMAK 426 Y++ G + V +K Sbjct: 57 HYKLHGVNINVEASK 71
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/75 (24%), Positives = 44/75 (58%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ NLP ++++++ LFE +G+V + + +++GFVH ++++A A++ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 56 Query: 470 KYEIDGQVLEVSMAK 426 Y++ G + V +K Sbjct: 57 HYKLHGVNINVEASK 71
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/75 (24%), Positives = 44/75 (58%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ NLP ++++++ LFE +G+V + + +++GFVH ++++A A++ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 56 Query: 470 KYEIDGQVLEVSMAK 426 Y++ G + V +K Sbjct: 57 HYKLHGVNINVEASK 71
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/75 (24%), Positives = 44/75 (58%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ NLP ++++++ LFE +G+V + + +++GFVH ++++A A++ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 56 Query: 470 KYEIDGQVLEVSMAK 426 Y++ G + V +K Sbjct: 57 HYKLHGVNINVEASK 71
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/75 (24%), Positives = 44/75 (58%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ NLP ++++++ LFE +G+V + + +++GFVH ++++A A++ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 56 Query: 470 KYEIDGQVLEVSMAK 426 Y++ G + V +K Sbjct: 57 HYKLHGVNINVEASK 71
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 474 + V LP+N+++E++K LF GE+ L K G +GFV++ + A KA+ Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 473 EKYEIDGQVLEVSMAKPLS 417 + + ++VS A+P S Sbjct: 101 NGLRLQTKTIKVSYARPSS 119 Score = 39.7 bits (91), Expect = 0.009 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YV LP+ +++++++ LF +G + T +L G R GF+ F +R A +A+KG Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 474 + V LP+N+++E++K LF GE+ L K G +GFV++ + A KA+ Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 473 EKYEIDGQVLEVSMAKPLS 417 + + ++VS A+P S Sbjct: 101 NGLRLQTKTIKVSYARPSS 119 Score = 39.7 bits (91), Expect = 0.009 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YV LP+ +++++++ LF +G + T +L G R GF+ F +R A +A+KG Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/75 (24%), Positives = 44/75 (58%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ NLP ++++++ LFE +G+V + + +++GFVH ++++A A++ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 56 Query: 470 KYEIDGQVLEVSMAK 426 Y++ G + V +K Sbjct: 57 HYKLHGVNINVEASK 71
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVL-PPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV +L N++++ ++ +FE G++ IVL + G + +GF+ F++ A +A++ Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 473 EKYEIDGQVLEVSMAKPLSDKKPDHSF 393 +E+ G+ + V D D +F Sbjct: 325 NGFELAGRPMRVGHVTERLDGGTDITF 351
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 474 + V LP+N+++E++K LF GE+ L K G +GFV++ + A KA+ Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 473 EKYEIDGQVLEVSMAKPLS 417 + + ++VS A+P S Sbjct: 101 NGLRLQTKTIKVSYARPSS 119 Score = 39.7 bits (91), Expect = 0.009 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YV LP+ +++++++ LF +G + T +L G R GF+ F +R A +A+KG Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 42.0 bits (97), Expect = 0.002 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Frame = -2 Query: 656 KTIYVKN-LPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAV 483 KT + N LP+N+++E++K LF GE+ L K G +GFV++ + A KA+ Sbjct: 38 KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97 Query: 482 KGSEKYEIDGQVLEVSMAKPLS 417 + + ++VS A+P S Sbjct: 98 NTLNGLRLQTKTIKVSYARPSS 119 Score = 39.7 bits (91), Expect = 0.009 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YV LP+ +++++++ LF +G + T +L G R GF+ F +R A +A+KG Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 42.0 bits (97), Expect = 0.002 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLF-EVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +++ N+P ++ + +KDL E GEVT + L G R G V F + KA++ Sbjct: 93 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 152 Query: 473 EKYEIDGQVLEV 438 KY++ G+ L + Sbjct: 153 NKYDLSGRPLNI 164
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 42.0 bits (97), Expect = 0.002 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 I+V NL + + +LFE G V + V+ G R FGFV + + A + Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 473 EKYEIDGQVLEVSMAKPLSDKKPDHSFK 390 YE+DG+ L V+ P +K+ + SF+ Sbjct: 149 NGYELDGRALRVNSGPP-PEKRENSSFR 175
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 42.0 bits (97), Expect = 0.002 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLF-EVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +++ N+P ++ + +KDL E GEVT + L G R G V F + KA++ Sbjct: 102 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161 Query: 473 EKYEIDGQVLEV 438 KY++ G+ L + Sbjct: 162 NKYDLSGRPLNI 173
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 42.0 bits (97), Expect = 0.002 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Frame = -2 Query: 659 VKTIYVKNL-PENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHFAERSSALKA 486 VK I+V L PE+ ++EK+++ F GE+ I LP K +R F F+ F E +K Sbjct: 151 VKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKE-EEPVKK 209 Query: 485 VKGSEKYEIDGQVLEVSMAKP 423 V + + + G E+ +A+P Sbjct: 210 VLEKKFHTVSGSKCEIKVAQP 230 Score = 38.1 bits (87), Expect = 0.027 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHFAERSSALKAVKGS 474 ++V L + SK+ +KD F GEV + G R FGF+ F + +S K V Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK-VLDQ 128 Query: 473 EKYEIDGQVLEVSMA 429 +++ +DG+V++ A Sbjct: 129 KEHRLDGRVIDPKKA 143
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 42.0 bits (97), Expect = 0.002 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSAL 492 A + +YV L E V + + F G++T I +P K R F FV F A Sbjct: 2 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61 Query: 491 KAVKGSEKYEIDGQVLEVSMAKPLSDKK 408 A+ + E+ G+ + V++AKP+ K+ Sbjct: 62 AAIDNMNESELFGRTIRVNLAKPMRIKE 89
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 42.0 bits (97), Expect = 0.002 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSAL 492 A + +YV L E V + + F G++T I +P K R F FV F A Sbjct: 2 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61 Query: 491 KAVKGSEKYEIDGQVLEVSMAKPLSDKK 408 A+ + E+ G+ + V++AKP+ K+ Sbjct: 62 AAIDNMNESELFGRTIRVNLAKPMRIKE 89
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/75 (33%), Positives = 37/75 (49%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IYV NLP ++ + V+D+F +G + I L + G F FV F + A AV + Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYARD 74 Query: 470 KYEIDGQVLEVSMAK 426 Y+ DG L V + Sbjct: 75 GYDYDGYRLRVEFPR 89
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Frame = -2 Query: 647 YVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +V L S E +++ F +GE+ V+ + G R FGFV F+ +S L A++ Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 470 KYEIDGQVLEVSMAK 426 E+DG+ + V+ A+ Sbjct: 71 GKELDGRNITVNQAQ 85
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/81 (27%), Positives = 41/81 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +YVKNL + + ++++ F +G +T + + G + FGFV F S A AV Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348 Query: 470 KYEIDGQVLEVSMAKPLSDKK 408 + + L V++A+ ++K Sbjct: 349 GRVVGSKPLYVALAQRKEERK 369 Score = 38.5 bits (88), Expect = 0.021 Identities = 17/86 (19%), Positives = 40/86 (46%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 V +++KNL + + + D F G + + + G+ + +GFVHF +A ++ Sbjct: 89 VGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSID 148 Query: 479 GSEKYEIDGQVLEVSMAKPLSDKKPD 402 ++G+ + V P +++ + Sbjct: 149 KVNGMLLNGKKVYVGKFIPRKEREKE 174
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHFAERSSALKAV 483 VK I+V L ++EK+++ F GE+ I LP K +R F F+ F E +K V Sbjct: 158 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKE-EDPVKKV 216 Query: 482 KGSEKYEIDGQVLEVSMAKP 423 + + + G E+ +A+P Sbjct: 217 LEKKFHTVSGSKCEIKVAQP 236 Score = 39.7 bits (91), Expect = 0.009 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHFAERSSALKAVKGS 474 ++V L + SK+ +KD F GEV + G R FGF+ F + SS+++ V Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD-SSSVEKVLDQ 135 Query: 473 EKYEIDGQVLEVSMA 429 +++ +DG+V++ A Sbjct: 136 KEHRLDGRVIDPKKA 150
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV LP+ +S+++++ LF +G + T +L G R GF+ F +R A +A+KG Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG- 185 Query: 473 EKYEIDGQVLEVSMAKPLSDKKP 405 ++GQ KPL +P Sbjct: 186 ----LNGQ-------KPLGAAEP 197 Score = 40.4 bits (93), Expect = 0.006 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 474 + V LP+N+++++ K LF G++ L K G +GFV++++ + A KA+ Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 473 EKYEIDGQVLEVSMAKPLS 417 ++ + ++VS A+P S Sbjct: 101 NGLKLQTKTIKVSYARPSS 119
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV LP+ +S+++++ LF +G + T +L G R GF+ F +R A +A+KG Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG- 185 Query: 473 EKYEIDGQVLEVSMAKPLSDKKP 405 ++GQ KPL +P Sbjct: 186 ----LNGQ-------KPLGAAEP 197 Score = 40.4 bits (93), Expect = 0.006 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 474 + V LP+N+++++ K LF G++ L K G +GFV++++ + A KA+ Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 473 EKYEIDGQVLEVSMAKPLS 417 ++ + ++VS A+P S Sbjct: 101 NGLKLQTKTIKVSYARPSS 119
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/87 (27%), Positives = 42/87 (48%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +T++V NL V++E + +LF G V K+ +P K G + F FV+F S A+ Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNL 69 Query: 476 SEKYEIDGQVLEVSMAKPLSDKKPDHS 396 ++ G+ +++ S D S Sbjct: 70 LNGIKLFGRPIKIQFRSGSSHASQDAS 96
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 8/83 (9%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFE-VHGEVTKIVLPPAKAGHKRD-------FGFVHFAERSS 498 TIYVKNL + +E+ + +F+ + G ++ ++ AK KR FGFV F +++S Sbjct: 620 TIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIR--AKPDPKRPGKYLSMGFGFVEFKDKAS 677 Query: 497 ALKAVKGSEKYEIDGQVLEVSMA 429 A+ A+ + +DG LE+ ++ Sbjct: 678 AVAAMHAMNGFVLDGHKLEIKLS 700 Score = 40.8 bits (94), Expect = 0.004 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Frame = -2 Query: 650 IYVKNLPENVSKEKV----KDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 I +KN+P KEK+ K L ++ E+T + + K G R F F+ F A KA+ Sbjct: 4 IIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAI 63 Query: 482 KGSEKYEIDGQVLEVSMA 429 + K ++ +EV A Sbjct: 64 RYLNKSYVETSRIEVHRA 81 Score = 35.4 bits (80), Expect = 0.18 Identities = 20/87 (22%), Positives = 38/87 (43%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I +KNLP +K+ V+ L +G++ + +P R F F F A A++ + Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALK 782 Query: 470 KYEIDGQVLEVSMAKPLSDKKPDHSFK 390 + G+ L + A + H+ + Sbjct: 783 NTHLLGRHLVLQYASNATMDDMQHAIE 809 Score = 33.1 bits (74), Expect = 0.88 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPA 552 + VKN P S E++ LF GE+ +I++PPA Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGELGRILIPPA 540
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKG 477 T V NLP+ +++++++DLF G V +I + K G + F FV F R A +A+ Sbjct: 177 TCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAE 236 Query: 476 SEKYEIDGQVLEVSMAKP 423 + VL+V +P Sbjct: 237 LNDIRMYHMVLKVEWTRP 254
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 40.8 bits (94), Expect = 0.004 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Frame = -2 Query: 665 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALK 489 A+VK ++V L +V++ + + F G V K ++ ++G KR FGFV+F +A K Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADK 154 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSD 414 A + + I G +EV A P D Sbjct: 155 AAV-VKFHPIQGHRVEVKKAVPKED 178
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 40.8 bits (94), Expect = 0.004 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHFAERSSALKAVKGS 474 ++++NL +E + LF +GE+ ++ LP K G + F V F + +A+ A + Sbjct: 303 LFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQ 362 Query: 473 EKYEIDGQVLEVSMAKPLSD--KKPDHSFK 390 + G++L + KP D + +H K Sbjct: 363 DGKIFQGRLLHILPGKPKKDYNRLDEHDLK 392 Score = 33.9 bits (76), Expect = 0.52 Identities = 19/75 (25%), Positives = 33/75 (44%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I +KNLP +K+ V+ LF G + + +P R F F + A A+ + Sbjct: 705 ILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQ 764 Query: 470 KYEIDGQVLEVSMAK 426 + G+ L + A+ Sbjct: 765 GTHLLGRRLVLQYAQ 779 Score = 33.1 bits (74), Expect = 0.88 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 6/100 (6%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEKVKDLFEVHGE--VTKIVLPPAKAGHKR----DFGFVHFA 510 PA +++VKNL + + D F+ V ++ + P + FGFV F+ Sbjct: 600 PATASTSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFS 659 Query: 509 ERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 390 + +A A K + + +DG L++ ++ D++ + K Sbjct: 660 SKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKK 699 Score = 33.1 bits (74), Expect = 0.88 Identities = 11/35 (31%), Positives = 24/35 (68%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPA 552 + I VKN P ++ ++ ++F +G++ K+++PPA Sbjct: 485 RVILVKNFPFGTTQPEIAEMFSEYGDLYKVMMPPA 519 Score = 32.7 bits (73), Expect = 1.2 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEV----------HGEVTKIVLPPAKAGHKRDFGFVHFAERS 501 + VKNLP + + +K F ++T + + A+ G R FGFV F Sbjct: 4 LIVKNLPPYLDEAGLKKHFSTVKDPKSAGFAPSDITDVKVVRARDGKTRRFGFVGFRSDE 63 Query: 500 SALKAVKGSEKYEIDGQVLEVSMAKPLSD 414 +A AVK + I+ + V++A +D Sbjct: 64 TAEAAVKYFDTSFINSTKISVAVAMTFTD 92
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 40.8 bits (94), Expect = 0.004 Identities = 21/73 (28%), Positives = 38/73 (52%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 + V NL VS +++LF G + K + ++G VHF R+ ALKA+K + Sbjct: 77 LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 136 Query: 470 KYEIDGQVLEVSM 432 +DG+ +++ + Sbjct: 137 GVPLDGRPMDIQL 149
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 40.8 bits (94), Expect = 0.004 Identities = 24/87 (27%), Positives = 42/87 (48%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +T++V NL V++E + +LF G V K+ +P K G + F FV+F S A+ Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69 Query: 476 SEKYEIDGQVLEVSMAKPLSDKKPDHS 396 ++ G+ +++ S D S Sbjct: 70 LNGIKLYGRPIKIQFRSGSSHAPQDVS 96
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 40.8 bits (94), Expect = 0.004 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSAL 492 A IYV ++ ++S+E +K +FE G + L + H + +GF+ +A + + Sbjct: 223 AKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMD 282 Query: 491 KAVKGSEKYEIDGQVLEV 438 +A+ +++ GQ+L V Sbjct: 283 EAIASMNLFDLGGQLLRV 300
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 40.4 bits (93), Expect = 0.006 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 474 + V LP+N+++E+ + LF GE+ L K G +GFV++ + A KA+ Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 473 EKYEIDGQVLEVSMAKPLS 417 + + ++VS A+P S Sbjct: 101 NGLRLQTKTIKVSYARPSS 119 Score = 39.7 bits (91), Expect = 0.009 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YV LP+ +++++++ LF +G + T +L G R GF+ F +R A +A+KG Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 40.4 bits (93), Expect = 0.006 Identities = 25/63 (39%), Positives = 32/63 (50%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A TI VKNL VS E + FEV G+V + V+ G G V FA +S A+ Sbjct: 183 APNATTIRVKNLTPFVSNELLFKSFEVFGQVERAVIIVDDRGKTTGEGIVEFARKSGAMS 242 Query: 488 AVK 480 A+K Sbjct: 243 ALK 245 Score = 35.0 bits (79), Expect = 0.23 Identities = 19/68 (27%), Positives = 42/68 (61%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +Y+ NL +V++E++K+LF +GE+++ A +++F F+ R++A +A Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEISE-----AFINAEKNFAFLKIDYRANAERA----- 164 Query: 470 KYEIDGQV 447 K ++DG++ Sbjct: 165 KKDLDGRM 172
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 40.4 bits (93), Expect = 0.006 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 474 + V LP+N+++E+ + LF GE+ L K G +GFV++ + A KA+ Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112 Query: 473 EKYEIDGQVLEVSMAKPLS 417 + + ++VS A+P S Sbjct: 113 NGLRLQTKTIKVSYARPSS 131 Score = 39.7 bits (91), Expect = 0.009 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YV LP+ +++++++ LF +G + T +L G R GF+ F +R A +A+KG Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 40.4 bits (93), Expect = 0.006 Identities = 20/71 (28%), Positives = 39/71 (54%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ NLP +++ + +KD+F+ G V + + G R FG V + ++A+ Sbjct: 221 VFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFN 280 Query: 470 KYEIDGQVLEV 438 E++G+VLEV Sbjct: 281 GMEVEGRVLEV 291 Score = 35.8 bits (81), Expect = 0.14 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 +I+V+NL + + E +K+LF GEV + + +K GH R G V F + S A+ Sbjct: 123 SIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAI 178 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/75 (25%), Positives = 32/75 (42%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IY NLP + ++ + DLF G++ L P + G V + A ++ Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKINNAELKPQENGQPTGVAVVEYENLVDADFCIQKLN 410 Query: 470 KYEIDGQVLEVSMAK 426 Y G L++S A+ Sbjct: 411 NYNYGGCSLQISYAR 425
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 40.4 bits (93), Expect = 0.006 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 474 + V LP+N+++E+ + LF GE+ L K G +GFV++ + A KA+ Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107 Query: 473 EKYEIDGQVLEVSMAKPLS 417 + + ++VS A+P S Sbjct: 108 NGLRLQTKTIKVSYARPSS 126 Score = 39.7 bits (91), Expect = 0.009 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +YV LP+ +++++++ LF +G + T +L G R GF+ F +R A +A+KG Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 40.0 bits (92), Expect = 0.007 Identities = 23/80 (28%), Positives = 38/80 (47%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 AA+ I +KNLP +K+ V+ LF +G++ + +P R FGF F A Sbjct: 693 AARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAEN 752 Query: 488 AVKGSEKYEIDGQVLEVSMA 429 A+ + + G+ L + A Sbjct: 753 AMDALKNTHLLGRRLVLEFA 772 Score = 38.5 bits (88), Expect = 0.021 Identities = 26/84 (30%), Positives = 41/84 (48%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 ++V LP ++ +++K FE VT + P KR GFV F +A +AV Sbjct: 6 VFVSGLPPTLTNDQLKKHFETRFHVTDAHVLP-----KRRIGFVGFKSSEAAQQAVSYFN 60 Query: 470 KYEIDGQVLEVSMAKPLSDKKPDH 399 K + + V +AKP+ D +P H Sbjct: 61 KTYMRMSKISVDIAKPI-DAEPAH 83 Score = 35.0 bits (79), Expect = 0.23 Identities = 21/74 (28%), Positives = 34/74 (45%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I VKN E ++ LFE G++T++++PP+ V FA A KA K Sbjct: 480 ILVKNFSYGTKTEDLRKLFEPFGQITRLLMPPSGT-----IAIVAFARPDEAQKAFKSLA 534 Query: 470 KYEIDGQVLEVSMA 429 ++ +L + A Sbjct: 535 YRKLGDSILFLEKA 548
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 40.0 bits (92), Expect = 0.007 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKAVKG 477 ++ + NL + ++ FE +G++ + +P K + + FGFV F ER A A+ Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79 Query: 476 SEKYEIDGQVLEVSMAK 426 ++ +DG+ L V++AK Sbjct: 80 TDGKLVDGRELRVTLAK 96
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 40.0 bits (92), Expect = 0.007 Identities = 21/73 (28%), Positives = 39/73 (53%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +T++V NL V++E + +LF G V K+ +P K G + F FV+F S A+ Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69 Query: 476 SEKYEIDGQVLEV 438 ++ G+ +++ Sbjct: 70 LNGIKLFGRPIKI 82
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 40.0 bits (92), Expect = 0.007 Identities = 20/59 (33%), Positives = 33/59 (55%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 486 + + ++V NLPENV +EK+ + F+ +G V + + P + FV F + SA KA Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 40.0 bits (92), Expect = 0.007 Identities = 20/59 (33%), Positives = 33/59 (55%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 486 + + ++V NLPENV +EK+ + F+ +G V + + P + FV F + SA KA Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 40.0 bits (92), Expect = 0.007 Identities = 23/80 (28%), Positives = 38/80 (47%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 AA+ I +KNLP +K+ V+ LF +G++ + +P R FGF F A Sbjct: 698 AARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAEN 757 Query: 488 AVKGSEKYEIDGQVLEVSMA 429 A+ + + G+ L + A Sbjct: 758 AMDALKNTHLLGRRLVLEFA 777 Score = 39.7 bits (91), Expect = 0.009 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I VKN V + ++ LFE +G++T++++PP+ V FA A KA KG Sbjct: 486 ILVKNFSYGVKVDDLRKLFEPYGQITRLLMPPSGT-----IAIVEFARPDEAQKAFKGLA 540 Query: 470 KYEIDGQVLEVSMA 429 ++ +L + A Sbjct: 541 YRKVGDSILFLEKA 554 Score = 31.2 bits (69), Expect = 3.3 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 ++V LP + ++++ F ++T + P KR GFV F +A +A Sbjct: 6 VFVSGLPPTFTNDQLRMHFSSRFQITDAHVLP-----KRRIGFVGFKSSEAAQQAASYFN 60 Query: 470 KYEIDGQVLEVSMAKPLSDKKP 405 K + + V +AKP+ D +P Sbjct: 61 KTYVKMSKISVEIAKPI-DSEP 81
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 39.3 bits (90), Expect = 0.012 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 + +YV N+P N++ ++++ + E HG + V+ +G R FGFV A ++ Sbjct: 84 RRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIE 143 Query: 479 GSEKYEIDGQVLEVSMA-KPL 420 EI G+ ++V++ KPL Sbjct: 144 KLNDTEIGGRKIKVNITEKPL 164 Score = 38.1 bits (87), Expect = 0.027 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV--TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 +Y+ NL + V+ E +KD F G+V K+ P FGFV F+ A++ Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPG-TSKSNGFGFVSFSSEEEVEAAIQA 244 Query: 476 SEKYEIDGQVLEVSMA 429 ++GQ + V+ A Sbjct: 245 LNNSVLEGQKIRVNKA 260
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 39.3 bits (90), Expect = 0.012 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 T++V L NV + + FE +G + V+ ++G + +G+V F +A AV Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323 Query: 476 SEKYEIDGQVLEVSMAKP 423 + EIDG+++ + ++ P Sbjct: 324 NGTKEIDGRMVNLDLSNP 341
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 39.3 bits (90), Expect = 0.012 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 ++V NL NV ++ LFE G V + V+ G R FGFV + + A + Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 473 EKYEIDGQVLEVSMAKP 423 YE +G+ L V+ P Sbjct: 161 NGYEFEGRPLRVNAGPP 177 Score = 38.1 bits (87), Expect = 0.027 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV NL V +++LF G+V + V+ +G + FGFV + KA+ Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318 Query: 473 EKYEIDGQVLEVSMAK 426 ++DG+ + VS A+ Sbjct: 319 NGADLDGRQIRVSEAE 334
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 38.9 bits (89), Expect = 0.016 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 + V LP+++ ++ LF G + T ++ K G+ +GFV F + AL+A+ Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNL 139 Query: 473 EKYEIDGQVLEVSMAKPLSDKKPD 402 + + ++VS A+P ++ D Sbjct: 140 NGITVRNKRIKVSFARPGGEQLRD 163
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 38.5 bits (88), Expect = 0.021 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = -2 Query: 647 YVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +V L + E ++ F G++T ++ + G R FGFV F + S A++G Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 470 KYEIDGQVLEVSMAK 426 E+DG+ + V+ A+ Sbjct: 69 GQELDGRNITVNEAQ 83
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 38.5 bits (88), Expect = 0.021 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKG 477 ++ V NL S + ++ +FE +G V + +P + R F FV F ++ A A+ Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74 Query: 476 SEKYEIDGQVLEVSMAK 426 + +DG+ L V MA+ Sbjct: 75 MDGAVLDGRELRVQMAR 91
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 38.5 bits (88), Expect = 0.021 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKG 477 ++ V NL S + ++ +FE +G V + +P + R F FV F ++ A A+ Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 476 SEKYEIDGQVLEVSMAK 426 + +DG+ L V MA+ Sbjct: 74 MDGAVLDGRELRVQMAR 90
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 38.5 bits (88), Expect = 0.021 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKG 477 ++ V NL S + ++ +FE +G V + +P + R F FV F ++ A A+ Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 476 SEKYEIDGQVLEVSMAK 426 + +DG+ L V MA+ Sbjct: 74 MDGAVLDGRELRVQMAR 90
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 38.5 bits (88), Expect = 0.021 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKG 477 ++ V NL S + ++ +FE +G V + +P + R F FV F ++ A A+ Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 476 SEKYEIDGQVLEVSMAK 426 + +DG+ L V MA+ Sbjct: 74 MDGAVLDGRELRVQMAR 90
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 38.5 bits (88), Expect = 0.021 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKG 477 ++ V NL S + ++ +FE +G V + +P + R F FV F ++ A A+ Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 476 SEKYEIDGQVLEVSMAK 426 + +DG+ L V MA+ Sbjct: 74 MDGAVLDGRELRVQMAR 90
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 38.5 bits (88), Expect = 0.021 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 2/95 (2%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEKVKDLFE-VHGEVTKIVLPPAKAGHKRDFGFVHFAERSSA 495 P + T ++ NLP +V+++ +KD F ++ ++ P+ + FG+ F + S Sbjct: 91 PKSPPYTAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFEDLDSL 150 Query: 494 LKAVKGSEKYEIDGQVLEVSMAKPLSDK-KPDHSF 393 L A+ +E+ + + + V +A DK + D SF Sbjct: 151 LSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSF 184
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 38.5 bits (88), Expect = 0.021 Identities = 17/75 (22%), Positives = 37/75 (49%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +++ L +++ +K +F HG +++++L + R F F+ F + A A K Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 Query: 470 KYEIDGQVLEVSMAK 426 + G+ ++V AK Sbjct: 70 GKSLHGKAIKVEQAK 84
>RNP1_YEAST (P32385) Ribonucleoprotein 1| Length = 249 Score = 38.5 bits (88), Expect = 0.021 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 3/62 (4%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEV-HGEVTKIVL--PPAKAGHKRDFGFVHFAERSSALKA 486 +T+YV NLP+N K+ ++DLFE +G++T +L P K KR F F+ F E + LK Sbjct: 35 RTLYVGNLPKNCRKQDLRDLFEPNYGKITINMLKKKPLKKPLKR-FAFIEFQEGVN-LKK 92 Query: 485 VK 480 VK Sbjct: 93 VK 94
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 38.1 bits (87), Expect = 0.027 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 + V NL VS +++LF G + K + ++G VHF ++ ALKA+K Sbjct: 107 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 166 Query: 470 KYEIDGQVLEVSM 432 +DG+ + + + Sbjct: 167 GVPLDGRPMNIQL 179
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 38.1 bits (87), Expect = 0.027 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGE-VTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV NLP ++ ++++ +F +G V K +L G R FV F +R A +A+ Sbjct: 190 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISAL 249 Query: 473 EKYEIDG--QVLEVSMAKPLSDKKPDH 399 +G Q L V +A+ K H Sbjct: 250 NNVIPEGASQPLTVRLAEEHGKMKAHH 276 Score = 34.7 bits (78), Expect = 0.30 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 + V LP++++ ++ LF G + T ++ K G+ + FV FA A A+K Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163 Query: 473 EKYEIDGQVLEVSMAKP 423 + + L+VS A+P Sbjct: 164 NGITVRNKRLKVSYARP 180
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 38.1 bits (87), Expect = 0.027 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFE-----------VHGEVTKIVLPPAKAGHKRDFGFVHFAER 504 + VK LP + +++++DL E V ++ + L + G R F F+ F + Sbjct: 4 VIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGFRDE 63 Query: 503 SSALKAVKGSEKYEIDGQVLEVSMAKPLSDKK 408 A V +D +EVSMAK +D + Sbjct: 64 EDAFDCVNYFNGTFVDTSKIEVSMAKSFADPR 95 Score = 32.7 bits (73), Expect = 1.2 Identities = 12/35 (34%), Positives = 24/35 (68%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPA 552 + I VKN P ++E++ +LF G++ +++LPP+ Sbjct: 516 RVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPS 550 Score = 32.3 bits (72), Expect = 1.5 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHF---AERSSALKAVK 480 I VKNLP +++ V +LF G++ + +P R F FV F E +A+ ++ Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQ 813 Query: 479 G 477 G Sbjct: 814 G 814
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 38.1 bits (87), Expect = 0.027 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 + V NL VS +++LF G + K + ++G VHF ++ ALKA+K Sbjct: 106 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 165 Query: 470 KYEIDGQVLEVSM 432 +DG+ + + + Sbjct: 166 GVPLDGRPMNIQL 178
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 37.7 bits (86), Expect = 0.036 Identities = 21/76 (27%), Positives = 38/76 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 IY+ L VS++ ++ F +G++ ++L K FGFV F ++ A AV Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL-------KNGFGFVEFDDKRDAEDAVHDLN 57 Query: 470 KYEIDGQVLEVSMAKP 423 E+ G+ + + +KP Sbjct: 58 GKELGGERVILDYSKP 73
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 37.7 bits (86), Expect = 0.036 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGE-VTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV NLP ++ ++++ +F +G V K +L G R FV F +R A +A+ Sbjct: 173 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISAL 232 Query: 473 EKYEIDG--QVLEVSMAKPLSDKKPDH 399 +G Q L V +A+ K H Sbjct: 233 NNVIPEGASQPLTVRLAEEHGKMKAHH 259 Score = 35.4 bits (80), Expect = 0.18 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 + V LP++++ ++ LF G + T ++ K G+ + FV FA A A+K Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSL 146 Query: 473 EKYEIDGQVLEVSMAKP 423 + + L+VS A+P Sbjct: 147 NGVTVRNKRLKVSYARP 163
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 37.7 bits (86), Expect = 0.036 Identities = 24/89 (26%), Positives = 44/89 (49%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A ++ V+NLP+ VS E +++ F V G+V + V+ G G V F+ + +A K Sbjct: 149 ACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARK 208 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 A+ +G L + +P++ + D Sbjct: 209 ALDRCS----EGSFLLTTFPRPVTVEPMD 233 Score = 35.8 bits (81), Expect = 0.14 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKA 486 Q ++V NLP ++++E+++ LFE +G+ ++ + HK + FGF+ R+ A A Sbjct: 77 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIA 130 Query: 485 VKGSEKYEIDGQVLEVSMA 429 + + G+ L V A Sbjct: 131 KVELDNMPLRGKQLRVRFA 149
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 37.7 bits (86), Expect = 0.036 Identities = 24/89 (26%), Positives = 44/89 (49%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A ++ V+NLP+ VS E +++ F V G+V + V+ G G V F+ + +A K Sbjct: 144 ACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARK 203 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 A+ +G L + +P++ + D Sbjct: 204 ALDRCS----EGSFLLTTFPRPVTVEPMD 228 Score = 35.8 bits (81), Expect = 0.14 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKA 486 Q ++V NLP ++++E+++ LFE +G+ ++ + HK + FGF+ R+ A A Sbjct: 72 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIA 125 Query: 485 VKGSEKYEIDGQVLEVSMA 429 + + G+ L V A Sbjct: 126 KVELDNMPLRGKQLRVRFA 144
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 37.7 bits (86), Expect = 0.036 Identities = 24/89 (26%), Positives = 44/89 (49%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A ++ V+NLP+ VS E +++ F V G+V + V+ G G V F+ + +A K Sbjct: 144 ACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARK 203 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 A+ +G L + +P++ + D Sbjct: 204 ALDRCS----EGSFLLTTFPRPVTVEPMD 228 Score = 35.8 bits (81), Expect = 0.14 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKA 486 Q ++V NLP ++++E+++ LFE +G+ ++ + HK + FGF+ R+ A A Sbjct: 72 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIA 125 Query: 485 VKGSEKYEIDGQVLEVSMA 429 + + G+ L V A Sbjct: 126 KVELDNMPLRGKQLRVRFA 144
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 37.7 bits (86), Expect = 0.036 Identities = 24/89 (26%), Positives = 44/89 (49%) Frame = -2 Query: 668 AAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALK 489 A ++ V+NLP+ VS E +++ F V G+V + V+ G G V F+ + +A K Sbjct: 146 ACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARK 205 Query: 488 AVKGSEKYEIDGQVLEVSMAKPLSDKKPD 402 A+ +G L + +P++ + D Sbjct: 206 ALDRCS----EGSFLLTTFPRPVTVEPMD 230 Score = 35.8 bits (81), Expect = 0.14 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKA 486 Q ++V NLP ++++E+++ LFE +G+ ++ + HK + FGF+ R+ A A Sbjct: 74 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIA 127 Query: 485 VKGSEKYEIDGQVLEVSMA 429 + + G+ L V A Sbjct: 128 KVELDNMPLRGKQLRVRFA 146
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 37.7 bits (86), Expect = 0.036 Identities = 21/83 (25%), Positives = 39/83 (46%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSAL 492 P ++ I+V+NL SKE++ +LF G + + L + +V F + A Sbjct: 719 PNMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQ 778 Query: 491 KAVKGSEKYEIDGQVLEVSMAKP 423 +AV G + G + V+++ P Sbjct: 779 RAVAGRDGCLFKGMNISVAISNP 801
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 37.4 bits (85), Expect = 0.047 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 14/93 (15%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKA--------------GHKRDFGFVHF 513 + V LP+ +++++++ LF GE+ + L K+ G +GFV++ Sbjct: 187 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 246 Query: 512 AERSSALKAVKGSEKYEIDGQVLEVSMAKPLSD 414 A +AV + + ++VS A+P SD Sbjct: 247 VRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSD 279 Score = 29.6 bits (65), Expect = 9.7 Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV--TKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 +YV LP+ +++++++ +F G + ++I+ + GF+ F +R A +A+ Sbjct: 286 LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 343
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 37.4 bits (85), Expect = 0.047 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 14/93 (15%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKA--------------GHKRDFGFVHF 513 + V LP+ +++++++ LF GE+ + L K+ G +GFV++ Sbjct: 151 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 210 Query: 512 AERSSALKAVKGSEKYEIDGQVLEVSMAKPLSD 414 A +AV + + ++VS A+P SD Sbjct: 211 VRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSD 243 Score = 29.6 bits (65), Expect = 9.7 Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV--TKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 +YV LP+ +++++++ +F G + ++I+ + GF+ F +R A +A+ Sbjct: 250 LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 307
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 37.4 bits (85), Expect = 0.047 Identities = 22/71 (30%), Positives = 36/71 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 + VKNLP +V+ + +KD+F+ G V + G G V F + +A++ Sbjct: 238 VIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYN 297 Query: 470 KYEIDGQVLEV 438 Y I+G VL+V Sbjct: 298 GYSIEGNVLDV 308 Score = 35.4 bits (80), Expect = 0.18 Identities = 23/79 (29%), Positives = 33/79 (41%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 + IY NLP + +K + DLFE G+V L G V + A ++ Sbjct: 351 RLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIER 410 Query: 476 SEKYEIDGQVLEVSMAKPL 420 Y G L++S AK L Sbjct: 411 LNNYNYGGCDLDISYAKRL 429
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 37.0 bits (84), Expect = 0.061 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTK-IVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +++ L S + ++D F GE+ + +V+ R FGFV FA+ +S K V G Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK-VLGQ 81 Query: 473 EKYEIDGQVLEVSMAKP 423 +E+D + ++ +A P Sbjct: 82 PHHELDSKTIDPKVAFP 98
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 37.0 bits (84), Expect = 0.061 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTK-IVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +++ L S + ++D F GE+ + +V+ R FGFV FA+ +S K V G Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK-VLGQ 81 Query: 473 EKYEIDGQVLEVSMAKP 423 +E+D + ++ +A P Sbjct: 82 PHHELDSKTIDPKVAFP 98
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 37.0 bits (84), Expect = 0.061 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = -2 Query: 647 YVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +V L + E ++ F G+V V+ + G R FGFV F+ S L A++ Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 470 KYEIDGQVLEVSMAK 426 E+DG+ + V+ A+ Sbjct: 71 GKELDGRNITVNQAQ 85
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 37.0 bits (84), Expect = 0.061 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 +T++V NL V +E + +LF G +TK+ + + G + FGFV F S A+ Sbjct: 10 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAI 67
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 36.6 bits (83), Expect = 0.080 Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKAVKGS 474 ++V L + +++ ++ +F +G+++++V+ + + R FGFV F A A+ Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 473 EKYEIDGQVLEVSMAKPLSDKK 408 +DG+ + V A SD + Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 36.6 bits (83), Expect = 0.080 Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKAVKGS 474 ++V L + +++ ++ +F +G+++++V+ + + R FGFV F A A+ Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 473 EKYEIDGQVLEVSMAKPLSDKK 408 +DG+ + V A SD + Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 36.6 bits (83), Expect = 0.080 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGE-VTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV NLP ++ +++ +F +G V K +L G R FV F +R A +A+ Sbjct: 198 LYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISAL 257 Query: 473 EKYEIDG--QVLEVSMAKPLSDKKPDH 399 +G Q L V +A+ K H Sbjct: 258 NNVIPEGASQPLTVRLAEEHGKAKAQH 284 Score = 35.4 bits (80), Expect = 0.18 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 + V LP++++ ++ LF G + T ++ K G+ + FV FA + + +A+K Sbjct: 112 LIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSL 171 Query: 473 EKYEIDGQVLEVSMAKP 423 + + L+VS A+P Sbjct: 172 NGITVRNKRLKVSYARP 188
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 36.6 bits (83), Expect = 0.080 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Frame = -2 Query: 665 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAG--HKRDFGFVHFAERSSAL 492 A+ KTI VKNLP + ++E+V D F G + + + +A HK FV + + Sbjct: 310 ARSKTILVKNLPSDTTQEEVLDYFSTIGPIKSVFISEKQANTPHK---AFVTYKNEEESK 366 Query: 491 KAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHS 396 KA K K + V K KP H+ Sbjct: 367 KAQKCLNKTIFKNHTIWVGPGK----DKPVHN 394
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 36.6 bits (83), Expect = 0.080 Identities = 24/89 (26%), Positives = 40/89 (44%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSAL 492 P I+V NL + +V++LF+ +G V + + R++GFVH Sbjct: 81 PNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV-------RNYGFVHLDCVGDVQ 133 Query: 491 KAVKGSEKYEIDGQVLEVSMAKPLSDKKP 405 A+K +DGQ L+V ++ KP Sbjct: 134 DAIKELNGRVVDGQPLKVQVSTSRVRPKP 162 Score = 33.5 bits (75), Expect = 0.67 Identities = 19/82 (23%), Positives = 37/82 (45%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSAL 492 P A +++ NL E +++ LFE +G V + + +++GFVH Sbjct: 2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV-------KNYGFVHMETEQQGR 54 Query: 491 KAVKGSEKYEIDGQVLEVSMAK 426 A++ Y ++ ++V AK Sbjct: 55 DAIQNLNGYTLNEFAIKVEAAK 76
>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy| suppressor of sporulation protein msa2) Length = 529 Score = 36.6 bits (83), Expect = 0.080 Identities = 17/80 (21%), Positives = 39/80 (48%) Frame = -2 Query: 719 WAEPKGXXXXXXXXXSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGH 540 W + + + +++ NLP ++++++++ E G + +I K Sbjct: 185 WGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQI-----KIVT 239 Query: 539 KRDFGFVHFAERSSALKAVK 480 +R+ FVHF ++A+KAV+ Sbjct: 240 ERNIAFVHFLNIAAAIKAVQ 259 Score = 34.7 bits (78), Expect = 0.30 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Frame = -2 Query: 719 WAEPKGXXXXXXXXXSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGH 540 W + G + IY+ N ++++ E++K+ FE GE+ + Sbjct: 393 WGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYV-----NFFR 447 Query: 539 KRDFGFVHFAERSSALKAV------KGSEKYEI 459 +++ FV+F +SA+ A+ KG E Y I Sbjct: 448 EKNCAFVNFTSLASAINAIDRIKQKKGYENYRI 480
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 36.6 bits (83), Expect = 0.080 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKA 486 Q T+YV L E VS+ + +LF G V +P + G + +GFV F A A Sbjct: 11 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70 Query: 485 VKGSEKYEIDGQVLEVSMA 429 +K ++ G+ + V+ A Sbjct: 71 IKIMNMIKLYGKPIRVNKA 89
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 36.6 bits (83), Expect = 0.080 Identities = 24/79 (30%), Positives = 38/79 (48%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I VKNLP +++ V +LF G++ + +P R F FV F S A A+ + Sbjct: 714 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQ 773 Query: 470 KYEIDGQVLEVSMAKPLSD 414 + G+ L + A+ SD Sbjct: 774 GVHLLGRRLVMQYAEQESD 792 Score = 33.1 bits (74), Expect = 0.88 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = -2 Query: 581 EVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKK 408 ++T + + K+G+ R F F+ + A A++ ID +EV+MAK +D + Sbjct: 36 QITDVKIVKDKSGNSRRFAFIGYRSEQDAFDAIEYFNGSFIDTARIEVAMAKSFADPR 93 Score = 32.0 bits (71), Expect = 2.0 Identities = 11/35 (31%), Positives = 24/35 (68%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPA 552 + I VKN P ++E++ +LF G++ ++++PP+ Sbjct: 488 RIILVKNFPHGTTREELAELFLPFGKIERMLMPPS 522
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 36.2 bits (82), Expect = 0.10 Identities = 24/83 (28%), Positives = 40/83 (48%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 ++V NL +V+ E + F + + K + + G R FGFV F + LKA + Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91 Query: 470 KYEIDGQVLEVSMAKPLSDKKPD 402 I + +++S A SD KP+ Sbjct: 92 GKYIGSRPVKLSRA--TSDVKPN 112
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 36.2 bits (82), Expect = 0.10 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGE-VTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV NLP ++ +++ +F +G V K +L G R FV + +R A +A+ Sbjct: 215 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 274 Query: 473 EKYEIDG--QVLEVSMAKPLSDKKPDH 399 +G Q L V +A+ K H Sbjct: 275 NNVIPEGGSQPLSVRLAQEHGKAKAAH 301 Score = 32.3 bits (72), Expect = 1.5 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 + V LP++++ ++ LF G + T ++ K G+ + FV F + +A+K Sbjct: 129 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 188 Query: 473 EKYEIDGQVLEVSMAKP 423 + + L+VS A+P Sbjct: 189 NGITVRNKRLKVSYARP 205
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 36.2 bits (82), Expect = 0.10 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGE-VTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV NLP ++ +++ +F +G V K +L G R FV + +R A +A+ Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 272 Query: 473 EKYEIDG--QVLEVSMAKPLSDKKPDH 399 +G Q L V +A+ K H Sbjct: 273 NNVIPEGGSQPLSVRLAEEHGKAKAAH 299 Score = 34.7 bits (78), Expect = 0.30 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEKVKDLFEVHGEV-TKIVLPPAKAGHKRDFGFVHFAERSSA 495 P A + V LP++++ ++ LF G + T ++ K G+ + FV F + Sbjct: 120 PRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDS 179 Query: 494 LKAVKGSEKYEIDGQVLEVSMAKP 423 +A+K + + L+VS A+P Sbjct: 180 QRAIKVLNGITVRNKRLKVSYARP 203
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 36.2 bits (82), Expect = 0.10 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHFAERSSALKAV 483 VK I+V L + +EK+++ F GEV I LP K +R F F+ F E K + Sbjct: 179 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 238 Query: 482 KGSEKYEIDGQ---VLEVSMAK 426 + +KY G ++V+M+K Sbjct: 239 E--KKYHNVGLSKCEIKVAMSK 258
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 36.2 bits (82), Expect = 0.10 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 21/100 (21%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPA--------------------KAG 543 Q +YVK++P + + E + D ++ GE+ + + G Sbjct: 538 QESNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVG 597 Query: 542 HKRDFGFVHFAERSSALKAVKGSEKYEID-GQVLEVSMAK 426 R +GFV F A KA+ ++ Y++ QVL VS A+ Sbjct: 598 SSRGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQ 637
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 36.2 bits (82), Expect = 0.10 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHFAERSSALKAV 483 VK I+V L + +EK+++ F GEV I LP K +R F F+ F E K + Sbjct: 33 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 92 Query: 482 KGSEKYEIDGQ---VLEVSMAK 426 + +KY G ++V+M+K Sbjct: 93 E--KKYHNVGLSKCEIKVAMSK 112
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 36.2 bits (82), Expect = 0.10 Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKAVKGS 474 ++V L + +++ ++ +F +G+++++V+ + + R FGFV F A A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 473 EKYEIDGQVLEVSMAKPLSDKK 408 +DG+ + V A SD + Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 36.2 bits (82), Expect = 0.10 Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKAVKGS 474 ++V L + +++ ++ +F +G+++++V+ + + R FGFV F A A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 473 EKYEIDGQVLEVSMAKPLSDKK 408 +DG+ + V A SD + Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 36.2 bits (82), Expect = 0.10 Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKAVKGS 474 ++V L + +++ ++ +F +G+++++V+ + + R FGFV F A A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 473 EKYEIDGQVLEVSMAKPLSDKK 408 +DG+ + V A SD + Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 35.8 bits (81), Expect = 0.14 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGS 474 IYV NLP +V ++ ++DLF +G + +I L K H F FV F + A A+ G Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFEDPRDAEDAIYGR 73 Query: 473 EKYE 462 Y+ Sbjct: 74 NGYD 77
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 35.8 bits (81), Expect = 0.14 Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVK 480 KT++V + + ++ K++ FEV+G + +I + +K +G R + F+ + A K Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 Query: 479 GSEKYEIDGQVLEVSMAK 426 ++ +IDG+ + V + + Sbjct: 163 HADGKKIDGRRVLVDVER 180
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 35.8 bits (81), Expect = 0.14 Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVK 480 KT++V + + ++ K++ FEV+G + +I + +K +G R + F+ + A K Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 Query: 479 GSEKYEIDGQVLEVSMAK 426 ++ +IDG+ + V + + Sbjct: 163 HADGKKIDGRRVLVDVER 180
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 35.4 bits (80), Expect = 0.18 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGS 474 IYV NLP +V ++ ++DLF +G + +I L K H F FV F + A A+ G Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFEDPRDAEDAIYGR 72 Query: 473 EKYE 462 Y+ Sbjct: 73 NGYD 76
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 35.4 bits (80), Expect = 0.18 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKGS 474 IYV NLP +V ++ ++DLF +G + +I L K H F FV F + A A+ G Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFEDPRDAEDAIYGR 72 Query: 473 EKYE 462 Y+ Sbjct: 73 NGYD 76
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 35.4 bits (80), Expect = 0.18 Identities = 18/88 (20%), Positives = 43/88 (48%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 + +YV NL + ++++ +K F+V G + I + K ++ FV + + A A++ Sbjct: 74 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 133 Query: 476 SEKYEIDGQVLEVSMAKPLSDKKPDHSF 393 +I+ +++++ A D +F Sbjct: 134 LNGKQIENNIVKINWAFQSQQSSSDDTF 161
>YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in chromosome II| Length = 352 Score = 35.4 bits (80), Expect = 0.18 Identities = 20/78 (25%), Positives = 40/78 (51%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +YV LPEN++ ++++ F GE+ + + G + FA+R A +A+ Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV-------NNNSGRIVFAQRYFAEQAINEMN 230 Query: 470 KYEIDGQVLEVSMAKPLS 417 + + G +++S A+P S Sbjct: 231 NFPLHGVRIQLSWARPPS 248
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 35.0 bits (79), Expect = 0.23 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 +++ NLP V K ++KD F+ +G V ++ + G +FGFV F + K + Sbjct: 342 LFIGNLPHEVDKSELKDFFQSYGNVVELRI--NSGGKLPNFGFVVFDDSEPVQKVL 395
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 35.0 bits (79), Expect = 0.23 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = -2 Query: 647 YVKNLPENVSKEKVKDLFEVHGE-VTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +V L + ++ F GE V ++ + G R FGFV F + S A++G Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 470 KYEIDGQVLEVSMAK 426 ++DG+ + V+ A+ Sbjct: 71 GQDLDGRSITVNEAQ 85
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 35.0 bits (79), Expect = 0.23 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = -2 Query: 647 YVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +V L ++ F +GEV ++ + G R FGFV F + S A++G Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 470 KYEIDGQVLEVSMAK 426 ++DG+ + V+ A+ Sbjct: 71 GQDLDGRSITVNEAQ 85
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 35.0 bits (79), Expect = 0.23 Identities = 18/78 (23%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVK 480 KT++V + + ++ K++ FEV+G + +I ++ ++G R + F+ + A K Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYK 162 Query: 479 GSEKYEIDGQVLEVSMAK 426 ++ +IDG+ + V + + Sbjct: 163 HADGKKIDGRRVLVDVER 180
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 35.0 bits (79), Expect = 0.23 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Frame = -2 Query: 662 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKA-GHKRDFGFVHFAERSSALKA 486 Q TIYV L E VS+ + +L G V + +P + + + FGFV F A A Sbjct: 11 QDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYA 70 Query: 485 VKGSEKYEIDGQVLEVSMA 429 +K ++ G+ ++V+ A Sbjct: 71 IKILNMIKLYGKPIKVNKA 89
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 35.0 bits (79), Expect = 0.23 Identities = 17/71 (23%), Positives = 36/71 (50%) Frame = -2 Query: 644 VKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKY 465 V N+ N++ E VK +FE G++ + L + FG++ + SA A++ + Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGF 403 Query: 464 EIDGQVLEVSM 432 ++ G+ + V + Sbjct: 404 DLAGRNMRVCL 414
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 35.0 bits (79), Expect = 0.23 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 18/100 (18%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKI----------VLPPAKAGHKRDF------- 528 +T++V NLP +K+K+K F+ +G+V + L A KR F Sbjct: 189 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSI 248 Query: 527 -GFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDK 411 +V F + S+A KA++ + +G + V +A + + Sbjct: 249 NAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASETASR 288
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 34.7 bits (78), Expect = 0.30 Identities = 18/57 (31%), Positives = 33/57 (57%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 T++V L N+S++ ++ F+ G + I +P K GFV ++E+S+A KA+ Sbjct: 298 TVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKG-----CGFVQYSEKSAAEKAI 349
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 34.7 bits (78), Expect = 0.30 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 + +YV+NLP N++ E++ D+F +G + +I + KA + FV + + A AV Sbjct: 19 RVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKA--TKGTAFVVYEDIYDAKNAVDH 76 Query: 476 SEKYEIDGQVLEV------SMAKPLSDKKPD 402 + + + L V M+K KK + Sbjct: 77 LSGFNVANRYLIVLYYQHAKMSKKFDQKKSE 107
>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1| Length = 305 Score = 34.3 bits (77), Expect = 0.40 Identities = 24/82 (29%), Positives = 41/82 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 ++V NLP+NV K+K +F+ +VT+ + +++ FVH E + Sbjct: 5 LFVGNLPDNVDSNKLKQVFQPFCKVTECDI-------VKNYAFVHI-EEDDVDPIITRLT 56 Query: 470 KYEIDGQVLEVSMAKPLSDKKP 405 Y IDG+V V++ K S +P Sbjct: 57 GYTIDGKV--VNIKKSTSKLRP 76
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 34.3 bits (77), Expect = 0.40 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKA-GHKRDFGFVHFAERSSALKAVKGS 474 IY+ NLP N+ +++V +L + G++ L A G + F F F S A A+ G Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371 Query: 473 EKYEIDGQVLEVSMA 429 + + G L A Sbjct: 372 DGKDTYGNKLHAQFA 386
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 34.3 bits (77), Expect = 0.40 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 18/100 (18%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKI----------VLPPAKAGHKRDF------- 528 +T++V NLP +K+K+K F+ +G+V + L A KR F Sbjct: 183 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSI 242 Query: 527 -GFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDK 411 +V F E +A KA++ + +G + V +A + + Sbjct: 243 NAYVVFKEERAAAKALQRNGAQIAEGFRIRVDLASETASR 282
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 33.9 bits (76), Expect = 0.52 Identities = 17/57 (29%), Positives = 32/57 (56%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 486 K I VKN P ++E++ ++F +G++ ++++PPA V F + +SA A Sbjct: 532 KVILVKNFPFGTTREELGEMFLPYGKLERLLMPPAGT-----IAIVQFRDTTSARAA 583 Score = 33.5 bits (75), Expect = 0.67 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 15/102 (14%) Frame = -2 Query: 650 IYVKNLP-----ENVSKEKVKDLFEVHGE----------VTKIVLPPAKAGHKRDFGFVH 516 I VK LP +N+ + K L + H +T + + + G R FGF+ Sbjct: 4 IIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESRRFGFIG 63 Query: 515 FAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 390 + A AV+ I+ +EVSMAK +D + K Sbjct: 64 YRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMK 105 Score = 32.0 bits (71), Expect = 2.0 Identities = 21/75 (28%), Positives = 34/75 (45%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I VKNLP +++ V +LF G++ + +P R F FV F A A+ Sbjct: 765 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLH 824 Query: 470 KYEIDGQVLEVSMAK 426 + G+ L + A+ Sbjct: 825 GVHLLGRRLVMQYAE 839
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 33.9 bits (76), Expect = 0.52 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = -2 Query: 647 YVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +V L + E ++ F G+V ++ ++G R FGFV F + + A++ Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 470 KYEIDGQVLEVSMAK 426 E+DG+V+ V+ A+ Sbjct: 69 GKELDGRVITVNEAQ 83
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 33.9 bits (76), Expect = 0.52 Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKAVK 480 KT++V L S+ K+K FE +G + ++ L + +K + + F+ + A K Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197 Query: 479 GSEKYEIDGQ--VLEVSMAKPLSDKKP 405 ++ +IDG+ +++V + + + +P Sbjct: 198 QADGQKIDGRRVLVDVERGRTVPNWRP 224
>PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1| Length = 399 Score = 33.9 bits (76), Expect = 0.52 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV-- 483 K ++++NLP +E++ DL + G KIV + G R+ FV FA+ + A+ V Sbjct: 17 KVVHLRNLPWECVEEELIDLCKRFG---KIVNTKSNVGANRNQAFVEFADLNQAISMVSY 73 Query: 482 --KGSEKYEIDGQVLEV 438 SE +I G+ + + Sbjct: 74 YASSSEPAQIRGKTVYI 90
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 33.9 bits (76), Expect = 0.52 Identities = 17/74 (22%), Positives = 36/74 (48%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I+V + ++ ++ F +G V ++ + +AG + +GFV F + A K ++ +E Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94 Query: 470 KYEIDGQVLEVSMA 429 K + L + A Sbjct: 95 KLNYKDKKLNIGPA 108
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 33.9 bits (76), Expect = 0.52 Identities = 17/74 (22%), Positives = 36/74 (48%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I+V + ++ ++ F +G V ++ + +AG + +GFV F + A K ++ +E Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94 Query: 470 KYEIDGQVLEVSMA 429 K + L + A Sbjct: 95 KLNYKDKKLNIGPA 108
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 33.5 bits (75), Expect = 0.67 Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 4/81 (4%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK----AGHKRDFGFVHFAERSSALK 489 KT++V + + ++ K++ FEV+G + +I + K +G R + F+ + Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHS 162 Query: 488 AVKGSEKYEIDGQVLEVSMAK 426 A K ++ +IDG+ + V + + Sbjct: 163 AYKHADGKKIDGRRVLVDVER 183
>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core| protein C) Length = 282 Score = 33.5 bits (75), Expect = 0.67 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEK-VKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSA 495 P + +++ NL V K+ V+ +F +G++ + HK F FV F+ +A Sbjct: 12 PRSMNSRVFIGNLNTLVVKKTDVEAIFSKYGKIVGCSV------HK-GFAFVQFSNERTA 64 Query: 494 LKAVKGSEKYEIDGQVLEVSMA 429 AV G + I GQVL++++A Sbjct: 65 RTAVAGEDGRMIAGQVLDINLA 86
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 33.5 bits (75), Expect = 0.67 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Frame = -2 Query: 596 FEVHGEV--TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 426 F +GEV +KI+L + R FGFV F+ + A++G E+DG+ + V+ A+ Sbjct: 7 FSTYGEVLESKIILD-RETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 33.5 bits (75), Expect = 0.67 Identities = 16/74 (21%), Positives = 36/74 (48%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 I+V + ++ ++ F +G V ++ + +AG + +GF+ F + A K ++ +E Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEAE 94 Query: 470 KYEIDGQVLEVSMA 429 K + L + A Sbjct: 95 KLNYKDKKLNIGPA 108
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 33.5 bits (75), Expect = 0.67 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEV--TKIVLPPAKAGHK-RDFGFVHFAERSSALKAVK 480 +Y++ LP N + + + L + +G++ TK +L KA +K + +GFV F ++A KAV Sbjct: 64 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD--KATNKCKGYGFVDFDSPAAAQKAVS 121 Query: 479 GSEKYEIDGQVLEVSMAKP 423 + + Q+ + P Sbjct: 122 ALKANGVQAQMAKQQEQDP 140
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 33.5 bits (75), Expect = 0.67 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 +++ NLP V K ++KD F+ G V ++ + G +FGFV F + K + Sbjct: 340 LFIGNLPHEVDKSELKDFFQNFGNVVELRI--NSGGKLPNFGFVVFDDSEPVQKVL 393
>COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 598 Score = 33.1 bits (74), Expect = 0.88 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 KT++V LPEN +++ + ++FE GE+ I K++F + FAE KA+ Sbjct: 99 KTVFVGGLPENGTEQIIVEVFEQCGEIIAI------RKSKKNFCHIRFAEEYMVDKAL 150
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 33.1 bits (74), Expect = 0.88 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = -2 Query: 644 VKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKA-GHKRDFGFVHFAERSSALKA 486 + NLP + + E+ ++L +G + + L ++ GH + +GFV + ++ A KA Sbjct: 135 ITNLPISFTLEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKA 188
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 33.1 bits (74), Expect = 0.88 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKAVKGS 474 ++V L N ++ ++D F G ++++V+ + + R FGF+ F A A++ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 473 EKYEIDGQVLEVSMA 429 +DG+ + V A Sbjct: 68 NGESLDGRQIRVDHA 82
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 33.1 bits (74), Expect = 0.88 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLP-PAKAGHKRDFGFVHF 513 VK I+V L + +EK+++ F GEV I LP K +R F F+ F Sbjct: 171 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 220
>COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 610 Score = 33.1 bits (74), Expect = 0.88 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAV 483 KT++V LPEN +++ + ++FE GE+ I K++F + FAE KA+ Sbjct: 128 KTVFVGGLPENGTEQIIVEVFEQCGEIIAI------RKSKKNFCHIRFAEEYMVDKAL 179
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 33.1 bits (74), Expect = 0.88 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Frame = -2 Query: 650 IYVKNLP-ENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 I+V N+ + + E++ LF +G V + + F FVH E + AL+A++ Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAV-------MKQFAFVHMRENAGALRAIEAL 55 Query: 473 EKYEI-DGQVLEVSMAKP 423 +E+ G+ L V M++P Sbjct: 56 HGHELRPGRALVVEMSRP 73
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 33.1 bits (74), Expect = 0.88 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Frame = -2 Query: 650 IYVKNLP-ENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 I+V N+ + + E++ LF +G V + + F FVH E + AL+A++ Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAV-------MKQFAFVHMRENAGALRAIEAL 55 Query: 473 EKYEI-DGQVLEVSMAKP 423 +E+ G+ L V M++P Sbjct: 56 HGHELRPGRALVVEMSRP 73
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 32.7 bits (73), Expect = 1.2 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 13/101 (12%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIV----LPP---------AKAGHKRDFGFVHF 513 +IYV L ++ E +K++F+ + + LPP + R FGFV F Sbjct: 206 SIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSF 265 Query: 512 AERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 390 A +A++ ++ L V A DK+ D + K Sbjct: 266 ANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENEK 306
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 474 +YV++LP + + ++ F G VT+ L +K G+ + + FV F A + Sbjct: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106 Query: 473 EKYEIDGQVLEVSMAKP 423 Y ++LE P Sbjct: 107 NNYLFGERLLECHFMPP 123
>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)| Length = 452 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVH-GEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVK 480 +T+YV NLP+ V +V +LF ++ GEV + + +V F++++S A++ Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQ 222 Query: 479 GSEKYEIDGQVLEVSMAK 426 ++ +E + L++ ++ Sbjct: 223 -NDGFEFKERPLKIQHSR 239
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKG 477 T+YV NL ++E++ +LF G++ KI++ K F FV + R+ A A++ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 476 SEKYEIDGQVL 444 +D +++ Sbjct: 101 INGTRLDDRII 111
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKG 477 T+YV NL ++E++ +LF G++ KI++ K F FV + R+ A A++ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 476 SEKYEIDGQVL 444 +D +++ Sbjct: 101 INGTRLDDRII 111
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKG 477 T+YV NL ++E++ +LF G++ KI++ K F FV + R+ A A++ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 476 SEKYEIDGQVL 444 +D +++ Sbjct: 101 INGTRLDDRII 111
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 32.7 bits (73), Expect = 1.2 Identities = 23/85 (27%), Positives = 41/85 (48%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 + V+NL S + +KD GEVT A G K + G + F S +A++ + Sbjct: 106 LIVENLSSRCSWQDLKDYMRQAGEVT---YADAHKGRKNE-GVIEFVSYSDMKRALEKLD 161 Query: 470 KYEIDGQVLEVSMAKPLSDKKPDHS 396 E++G+ + + KP S ++ +S Sbjct: 162 GTEVNGRKIRLVEDKPGSRRRRSYS 186
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFA---ERSSALKAVK 480 I VKNLP +++ V +LF G++ + +P R F FV F E +A+ ++ Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENAMDQLQ 799 Query: 479 G 477 G Sbjct: 800 G 800 Score = 32.7 bits (73), Expect = 1.2 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 11/98 (11%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFE-----------VHGEVTKIVLPPAKAGHKRDFGFVHFAER 504 + VK LP +++ +++ F V G +T + + + G R F F+ + Sbjct: 4 VIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNREGKSRRFAFIGYKNE 63 Query: 503 SSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 390 AL AV + I +EV MAK +D + S K Sbjct: 64 QDALDAVNYFDGSFIYTSKIEVDMAKSFADPRVPKSMK 101 Score = 32.3 bits (72), Expect = 1.5 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPA---KAGHKRDFGFVHFAERSSALKA 486 + I VKN P ++E++ +LF G++ ++++PPA RD A A K Sbjct: 512 RVILVKNFPFGTTREELGELFVPFGKLERLLMPPAGTIAIVQFRDIASGRSAFSKLAFKR 571 Query: 485 VKGSEKY 465 KG+ Y Sbjct: 572 FKGTVIY 578 Score = 30.0 bits (66), Expect = 7.5 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVH-GEVTKIVL--PPAKAGHK---RDFGFVHFAERSSAL 492 +I++KNL + +++ D F+V G V V P K +K FGFV F + A Sbjct: 641 SIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQAT 700 Query: 491 KAVKGSEKYEIDGQVLEVSMA 429 + + IDG +++ ++ Sbjct: 701 AVISAMDGTVIDGHKIQLKLS 721
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 32.7 bits (73), Expect = 1.2 Identities = 23/85 (27%), Positives = 41/85 (48%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 + V+NL S + +KD GEVT A G K + G + F S +A++ + Sbjct: 106 LIVENLSSRCSWQDLKDYMRQAGEVT---YADAHKGRKNE-GVIEFVSYSDMKRALEKLD 161 Query: 470 KYEIDGQVLEVSMAKPLSDKKPDHS 396 E++G+ + + KP S ++ +S Sbjct: 162 GTEVNGRKIRLVEDKPGSRRRRSYS 186
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 32.7 bits (73), Expect = 1.2 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = -2 Query: 644 VKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKA-GHKRDFGFVHFAERSSALKA 486 + N+P + + E+ ++L +G + + L ++ GH + +GFV + ++ A KA Sbjct: 146 ITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKA 199
>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2| Length = 1484 Score = 32.7 bits (73), Expect = 1.2 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 14/77 (18%) Frame = +2 Query: 80 HLQKMQGKGKTSRADNAGGFLRHRHPAG-------------HHVEEGVEAAFHQVVAEHS 220 H Q +G S ++GGF R+R P G HH + A Q ++ Sbjct: 1174 HPQHFPPRGFQSNHPHSGGFPRYRPPQGMRYSYHPPPQPSYHHYQRTPYYACPQSFSDWQ 1233 Query: 221 QGGH-QGAPSEPSSSQP 268 + H QG+PS P +SQP Sbjct: 1234 RPLHPQGSPSGPPASQP 1250
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 32.7 bits (73), Expect = 1.2 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKAVKGS 474 ++V L N ++ ++D F G ++++V+ + + R FGF+ F A A++ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 473 EKYEIDGQVLEVSMA 429 +DG+ + V A Sbjct: 68 NGESLDGRQIRVDHA 82
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +++ +LP+ + + +F G V V + + FGFV + SA A++ Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462 Query: 473 EKYEIDGQVLEVSMAKPLSDKKP 405 ++I + L+V + + +D KP Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSKP 485
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +++ +LP+ + + +F G V V + + FGFV + SA A++ Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462 Query: 473 EKYEIDGQVLEVSMAKPLSDKKP 405 ++I + L+V + + +D KP Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSKP 485
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 32.3 bits (72), Expect = 1.5 Identities = 20/74 (27%), Positives = 37/74 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 ++V NLP ++++++ K LF +GE ++ + K FGF+ R+ A A + Sbjct: 291 LFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKG-----FGFIKLESRALAEIAKAELD 345 Query: 470 KYEIDGQVLEVSMA 429 + G+ L V A Sbjct: 346 DTPMRGRQLRVRFA 359
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 32.3 bits (72), Expect = 1.5 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHK-RDFGFVHFAERSSALKAV 483 K +YV + E+ +++ + + F +G VTK + KA K R FGFV F + S + V Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
>HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 313 Score = 32.3 bits (72), Expect = 1.5 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEK-VKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSA 495 P + +++ NL V K+ V+ +F +G++ + HK F FV + +A Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV------HK-GFAFVQYVNERNA 63 Query: 494 LKAVKGSEKYEIDGQVLEVSMA 429 AV G + I GQVL++++A Sbjct: 64 RAAVAGEDGRMIAGQVLDINLA 85
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 32.3 bits (72), Expect = 1.5 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = -2 Query: 647 YVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 +V L ++ F +G+V ++ + G R FGFV F + + A++G Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 470 KYEIDGQVLEVSMAK 426 ++DG+ + V+ A+ Sbjct: 71 GQDLDGRSITVNEAQ 85
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 32.3 bits (72), Expect = 1.5 Identities = 12/49 (24%), Positives = 29/49 (59%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAE 507 T++V + V + ++++ F +G V ++ + + G + +GFV+F+E Sbjct: 48 TLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSE 96
>HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 306 Score = 32.3 bits (72), Expect = 1.5 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Frame = -2 Query: 671 PAAQVKTIYVKNLPENVSKEK-VKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSA 495 P + +++ NL V K+ V+ +F +G++ + HK F FV + +A Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV------HK-GFAFVQYVNERNA 63 Query: 494 LKAVKGSEKYEIDGQVLEVSMA 429 AV G + I GQVL++++A Sbjct: 64 RAAVAGEDGRMIAGQVLDINLA 85
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 32.3 bits (72), Expect = 1.5 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -2 Query: 536 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 420 R F FV F E A+ A+ + EI G+ + V++A+P+ Sbjct: 11 RGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVARPV 49
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 32.3 bits (72), Expect = 1.5 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 +YV +LP + + ++K FE G+V ++ V K G + +GFV F A + Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 473 EKYEIDGQVLEVSMAKP 423 Y + ++++ + P Sbjct: 107 NNYLMGERIIKCHVIPP 123
>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 657 Score = 32.3 bits (72), Expect = 1.5 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = +2 Query: 11 KKKSYRAKQNTLLNALHQS*QIHHLQKMQ-GKGKTSRADNAGGFLRHRHPAGHHVEEG 181 K+K + ++ L LHQ+ I LQK++ G + + AGGF R H G H+ +G Sbjct: 226 KEKIAQLEEQIKLEELHQA-LISKLQKLKTGNETVTSPETAGGFSRTPHWPGQHIPKG 282
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 32.3 bits (72), Expect = 1.5 Identities = 20/74 (27%), Positives = 37/74 (50%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 471 ++V NLP ++++++ K LF +GE ++ + K FGF+ R+ A A + Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKG-----FGFIKLESRALAEIAKAELD 353 Query: 470 KYEIDGQVLEVSMA 429 + G+ L V A Sbjct: 354 DTPMRGRQLRVRFA 367
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 32.3 bits (72), Expect = 1.5 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = -2 Query: 659 VKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKA-GHKRDFGFVHFAERSSALKAV 483 VK ++V L +N +E +++ F G V + L K G +R F FV F + + KA+ Sbjct: 122 VKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181
>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp24; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 656 Score = 32.0 bits (71), Expect = 2.0 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = +2 Query: 11 KKKSYRAKQNTLLNALHQS*QIHHLQKMQ-GKGKTSRADNAGGFLRHRHPAGHHVEEG 181 K+K + ++ L LHQ+ I LQK++ G + D AGG R H G H+ +G Sbjct: 225 KEKIAQLEEQIKLEELHQA-LISKLQKLKTGNETVTHPDTAGGLSRTPHWPGQHIPKG 281
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 32.0 bits (71), Expect = 2.0 Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Frame = -2 Query: 650 IYVKNLPENVSKEKVKDLFEVHGEVTK-IVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 ++V L ++E + F G++ +V+ ++G R FGFV FA+ ++ + V + Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTN-VNHVLQN 67 Query: 473 EKYEIDGQVLEVSMAKPLSDKKP 405 + +DG+ ++ P + +KP Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKP 90
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 32.0 bits (71), Expect = 2.0 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Frame = -2 Query: 650 IYVKNLP-ENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 I+V N+ + + E++ LF +G V + + F FVH E + A++A++ Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAV-------MKQFAFVHMRENAGAVRAIEAL 55 Query: 473 EKYEI-DGQVLEVSMAKP 423 +E+ G+ L V M++P Sbjct: 56 HGHELRPGRALVVEMSRP 73
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 32.0 bits (71), Expect = 2.0 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Frame = -2 Query: 650 IYVKNLP-ENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGS 474 I+V N+ + + E++ LF +G V + + F FVH E + A++A++ Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAV-------MKQFAFVHMRENAGAVRAIEAL 55 Query: 473 EKYEI-DGQVLEVSMAKP 423 +E+ G+ L V M++P Sbjct: 56 HGHELRPGRALVVEMSRP 73
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 32.0 bits (71), Expect = 2.0 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = -2 Query: 653 TIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR-DFGFVHFAERSSALKAVKG 477 TIYV NL S+E++ +LF G + KI++ + F F+ + AL A+K Sbjct: 47 TIYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTPQEALAALKY 106 Query: 476 SEKYEIDGQVLEVSM 432 K ++D + + + + Sbjct: 107 LSKTKLDDREITIDL 121
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 32.0 bits (71), Expect = 2.0 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = -2 Query: 656 KTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKG 477 K ++V N+P +K +FE G V+ + + + G K FGFV A +A + Sbjct: 153 KRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSK-GFGFVTMERPQDAERARQE 211 Query: 476 SEKYEIDGQVLEVSMA 429 I+G+ +EV+ A Sbjct: 212 LHGSMIEGRKIEVNCA 227
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 31.6 bits (70), Expect = 2.6 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 6/77 (7%) Frame = +2 Query: 146 HRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGA------PSEPSSSQPVLVLYHIS*AG*I 307 H HP HH E E H EH + H+ P P +H+ Sbjct: 63 HHHPEEHH-EPHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHL------ 115 Query: 308 QGHHHRHHMGLPCSHHK 358 GHHH HH HH+ Sbjct: 116 -GHHHHHHHAAHHHHHE 131 Score = 31.2 bits (69), Expect = 3.3 Identities = 20/74 (27%), Positives = 23/74 (31%) Frame = +2 Query: 134 GFLRHRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQG 313 G H H A HH E H A H + P +H+ Sbjct: 116 GHHHHHHHAAHH-HHHEEHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHHHHLGYHHHHAP 174 Query: 314 HHHRHHMGLPCSHH 355 HHH HH P HH Sbjct: 175 HHHHHHHHAPHHHH 188 Score = 30.4 bits (67), Expect = 5.7 Identities = 21/70 (30%), Positives = 23/70 (32%) Frame = +2 Query: 146 HRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHR 325 H HP HH G +H A H H AP +H HHH Sbjct: 156 HHHPWFHHHHLG----YHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHA---PHHHH 208 Query: 326 HHMGLPCSHH 355 HH P HH Sbjct: 209 HHHHAPHHHH 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,741,082 Number of Sequences: 219361 Number of extensions: 2001592 Number of successful extensions: 7118 Number of sequences better than 10.0: 286 Number of HSP's better than 10.0 without gapping: 6365 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6943 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7366267610 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
