ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38f16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLGA_STRPN (Q97QS5) Glycogen synthase (EC 2.4.1.21) (Starch [bac... 30 5.0
2EGR4_RAT (Q00911) Early growth response protein 4 (EGR-4) (Early... 30 6.5
3EGR4_MOUSE (Q9WUF2) Early growth response protein 4 (EGR-4) 30 6.5

>GLGA_STRPN (Q97QS5) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase)
          Length = 477

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 23/99 (23%), Positives = 40/99 (40%)
 Frame = +1

Query: 181 QTVAATTG*SFQLKARDPLLIXLPGLNIQVHSXKRLCWRNLLMSRCCLNYSLVGVXXXXX 360
           +TV       FQ +  + +L  L G+  + ++   L W N      CLN+   G+     
Sbjct: 157 ETVLTIHNLEFQGQFSEGMLGDLFGVGFERYADGTLRWNN------CLNWMKAGILYANR 210

Query: 361 XXXXXXXXXHQLVSSXCS*LSEQILSTAKGELEEIHFGI 477
                    H++++S      +QIL    G++  I  GI
Sbjct: 211 VSTVSPSYAHEIMTSQFGCNLDQILKMESGKVSGIVNGI 249



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>EGR4_RAT (Q00911) Early growth response protein 4 (EGR-4) (Early response|
           protein NGFI-C) (Nerve growth factor-induced protein C)
           (NGFI-C)
          Length = 478

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 228 GSPPHXATGLEYSGPFXEEVMLEEPADVTLLFELFLG 338
           G  P   +GL YSG F  + + E P D   LF L  G
Sbjct: 69  GPAPTPPSGLSYSGSFFIQAVPEHPHDPEALFNLMSG 105



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>EGR4_MOUSE (Q9WUF2) Early growth response protein 4 (EGR-4)|
          Length = 478

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 228 GSPPHXATGLEYSGPFXEEVMLEEPADVTLLFELFLG 338
           G  P   +GL YSG F  + + E P D   LF L  G
Sbjct: 69  GPAPTPPSGLSYSGSFFIQAVPEHPHDPEALFNLMSG 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,304,083
Number of Sequences: 219361
Number of extensions: 1446328
Number of successful extensions: 3119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3119
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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