Clone Information

BLAST Search Result

Clone Name	rbags38f16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY557340.2\| Triticum aestivum root hair defective 3 GTP-bindi...	807	0.0
2	dbj\|AK101859.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	212	1e-51
3	dbj\|AK101558.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	212	1e-51
4	dbj\|AK070726.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	212	1e-51
5	ref\|NM_193615.1\| Oryza sativa (japonica cultivar-group), predic...	210	4e-51
6	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	7e-25
7	dbj\|AP003432.2\| Oryza sativa (japonica cultivar-group) genomic D...	123	7e-25
8	gb\|AY104942.1\| Zea mays PCO129434 mRNA sequence	64	5e-07
9	gb\|AC185139.2\| Pan troglodytes BAC clone CH251-174C16 from chrom...	42	2.0
10	gb\|AY359583.1\| Zea mays B73 Etr2-like ethylene receptor (ETR61) ...	42	2.0
11	emb\|BX908793.14\| Zebrafish DNA sequence from clone DKEY-104G4 in...	42	2.0
12	gb\|AC104651.2\| Homo sapiens BAC clone RP11-217P16 from 2, comple...	42	2.0
13	gb\|CP000109.1\| Thiomicrospira crunogena XCL-2, complete genome	40	7.9
14	gb\|AY506529.1\| Zea mays strain NB mitochondrion, complete genome	40	7.9
15	gb\|AE017334.2\| Bacillus anthracis str. 'Ames Ancestor', complete...	40	7.9
16	gb\|AE017225.1\| Bacillus anthracis str. Sterne, complete genome	40	7.9
17	gb\|DQ490952.1\| Zea mays subsp. mays genotype male-fertile NA mit...	40	7.9
18	gb\|DQ490951.1\| Zea mays subsp. mays genotype CMS-S mitochondrion...	40	7.9
19	gb\|AC106017.11\| Homo sapiens chromosome 17, clone RP11-744A16, c...	40	7.9
20	gb\|DQ490953.1\| Zea mays subsp. mays genotype CMS-T mitochondrion...	40	7.9
21	gb\|AF522077.2\| Lactobacillus plantarum strain NC8 bacteriocin pr...	40	7.9
22	gb\|AC005099.2\| Homo sapiens BAC clone CTA-351J1 from 7, complete...	40	7.9
23	gb\|CP000001.1\| Bacillus cereus E33L, complete genome	40	7.9
24	emb\|Z86064.2\|HS435D1 Human DNA sequence from clone RP3-435D1 on ...	40	7.9
25	emb\|AL359983.7\| Human DNA sequence from clone RP11-139L21 on chr...	40	7.9
26	emb\|AL353715.21\| Human DNA sequence from clone CTD-3184A7 on chr...	40	7.9
27	emb\|X94434.1\|LPATOVGNS L.plantarum pln[A,B,C,D,E,F,G,H,I,J,K,L,M...	40	7.9
28	emb\|AL935253.1\| Lactobacillus plantarum strain WCFS1 complete ge...	40	7.9
29	emb\|AL646055.10\| Mouse DNA sequence from clone RP23-382C18 on ch...	40	7.9
30	gb\|AC093153.2\| Homo sapiens chromosome 1 clone RP11-477C23, comp...	40	7.9
31	gb\|AC144506.1\| Homo sapiens chromosome 17, clone XXfos-800635C12...	40	7.9
32	gb\|AC139077.2\| Homo sapiens chromosome 17, clone XXfos-88899C12,...	40	7.9
33	gb\|AC007952.15\| Homo sapiens chromosome 17, clone RP11-160E2, co...	40	7.9
34	gb\|AC084452.1\|AC084452 Caenorhabditis briggsae cosmid CB024D21, ...	40	7.9
35	gb\|AC140106.1\| Homo sapiens chromosome 17, clone XXfos-801239H9,...	40	7.9
36	gb\|AF217796.1\|AF217796 Homo sapiens SCG10 like-protein, helicase...	40	7.9
37	emb\|AL132777.4\|CNS01DTI Human chromosome 14 DNA sequence BAC R-3...	40	7.9
38	emb\|AL049874.3\|CNS0000Q Human chromosome 14 DNA sequence BAC R-1...	40	7.9
39	gb\|AE016879.1\| Bacillus anthracis str. Ames, complete genome	40	7.9
40	gb\|AC005389.1\|AC005389 Homo sapiens chromosome 17, clone hRPK.60...	40	7.9
41	gb\|AC157784.2\| Mus musculus chromosome 18, clone RP24-163C18, co...	40	7.9

>gb|AY557340.2| Triticum aestivum root hair defective 3 GTP-binding protein (wrsi2)
            mRNA, complete cds
          Length = 2800

 Score =  807 bits (407), Expect = 0.0
 Identities = 515/551 (93%), Gaps = 8/551 (1%)
 Strand = Plus / Minus

                                                                        
Query: 34   gaagttattctacaacgtttcttacaaacgattcccagccccaaaattccatatatgaca 93
            ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 2733 gaagttattctacaatgtttcttacaaacgattcccagccccaaaattccttatataaca 2674

                                                                        
Query: 94   gctgtggactcttccacataattttcatacatcagctcgggaagggcaagcg----taga 149
            |||||||||||||||||| |||| ||||||||||| | ||||||||||||||    || |
Sbjct: 2673 gctgtggactcttccacaaaattctcatacatcaggttgggaagggcaagcgagcgtaca 2614

                                                                        
Query: 150  aaaaccgcanggcacttcaatctcctaggctcaaaccgttgcagctacaactgggtagag 209
            ||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 2613 aaaaccgcaaggcacttcaatctcctaggctcaaaccgttgcagctacagctag-tagag 2555

                                                                        
Query: 210  ttttcagctaaaagctagggatcccctcctcattgngctaccgggcttgaatattcaggt 269
             ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct: 2554 ctttcagctaaaagctagggatccactcatcattgtgctaccgggcttgaatattcaggt 2495

                                                                        
Query: 270  ccattctntgaagaggttatgctggaggaacctgctgatgtcacgttgctgtttgaacta 329
            ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2494 ccattctctgaagaggttaagctggaggaacctgctgatgtcacgttgctgtttgaacta 2435

                                                                        
Query: 330  tt---ccttggttggagttccgtctntntctgcctntctggggctgccggcgctgccccc 386
            ||   |||||||||||| ||||||| | ||||||| ||||||||||| ||||||||||||
Sbjct: 2434 ttattccttggttggagctccgtctctctctgcctctctggggctgcgggcgctgccccc 2375

                                                                        
Query: 387  tcatcagctagtctcttcanaatgttcataattgtcggaacaaattttgtcgacagcgaa 446
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2374 tcatcagctagtctcttcagaatgttcataattgtcggaacaaattttgtcgacagcgaa 2315

                                                                        
Query: 447  aggagagctggaagaaatccatttcggaattcgttggcaatgtctagttgtacccacatg 506
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 2314 aggagagctggaagaaatccatttcggaattcattggcaatgtctagttgtacccatatg 2255

                                                                        
Query: 507  gctttcccgactaggaaaactacaaaaatgacggccaggtaaaacgggttcctcagtaat 566
            |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 2254 gctttcccgactaggaaaactacaaacatgacggccaggtaaaatgggttcctcagtaat 2195

                       
Query: 567  gtcataaactc 577
            ||||| |||||
Sbjct: 2194 gtcatgaactc 2184

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>dbj|AK101859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069P18, full
            insert sequence
          Length = 2988

 Score =  212 bits (107), Expect = 1e-51
 Identities = 359/440 (81%), Gaps = 14/440 (3%)
 Strand = Plus / Minus

                                                                        
Query: 121  tacatcagctcgggaagggcaagcgtagaaaaaccgcanggcacttcaatctccta-ggc 179
            |||||||| | ||||||||||||| || |||||| ||| ||| ||||  ||||| | |||
Sbjct: 2664 tacatcagatggggaagggcaagcttacaaaaactgcaaggcgcttcggtctccaaaggc 2605

                                                                        
Query: 180  tcaaaccgttgcagctacaactgggtagagttttcagctaaaagctagggatcccctcct 239
            |||  |||||| | |||||||||  | | ||||||||||||||||||  |||   ||  |
Sbjct: 2604 tcac-ccgttgaaactacaactgc-tggggttttcagctaaaagctatagatgaactgat 2547

                                                                        
Query: 240  cattgngctaccgggcttgaatattcaggtccattctntgaagaggttatgctggaggaa 299
            || || || | ||||||||||||||| |||||| |||  ||||||||||||||||| || 
Sbjct: 2546 cagtgtgcaatcgggcttgaatattcgggtccactctccgaagaggttatgctggatgac 2487

                                                                        
Query: 300  cctgctgatgtcacgttgctgtttgaactattccttg---------gttggagttccgtc 350
            ||||| |||||||||||||||| ||||| ||||||||         ||||||||||| ||
Sbjct: 2486 cctgccgatgtcacgttgctgtgtgaaccattccttgtggattttggttggagttccatc 2427

                                                                        
Query: 351  tntntctgcctntctggggctgccgg-cgctgccccctcatcagctagtctcttcanaat 409
            | | | ||||| ||||||||||| || | ||||||| |||||||||| ||||||||  ||
Sbjct: 2426 tctctttgcctctctggggctgcaggtctctgcccc-tcatcagctaatctcttcaggat 2368

                                                                        
Query: 410  gttcataattgtcggaacaaattttgtcgacagcgaaaggagagctggaagaaatccatt 469
            |||||| || || ||||| ||||| ||||| || || ||||  |||||||||||||||||
Sbjct: 2367 gttcattatcgtgggaacgaatttcgtcgaaagtgataggacggctggaagaaatccatt 2308

                                                                        
Query: 470  tcggaattcgttggcaatgtctagttgtacccacatggctttcccgactaggaaaactac 529
            | |||| || |||||||||||||| ||||||||||||||||| || || |||||||| ||
Sbjct: 2307 ttggaactccttggcaatgtctagctgtacccacatggcttttccaacaaggaaaacaac 2248

                                
Query: 530  aaaaatgacggccaggtaaa 549
            ||| |||||  |||||||||
Sbjct: 2247 aaatatgactcccaggtaaa 2228



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 39   tattctacaacgtttcttacaaac 62
            ||||||||| ||||||||||||||
Sbjct: 2746 tattctacagcgtttcttacaaac 2723

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>dbj|AK101558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050C19, full
            insert sequence
          Length = 2213

 Score =  212 bits (107), Expect = 1e-51
 Identities = 359/440 (81%), Gaps = 14/440 (3%)
 Strand = Plus / Minus

                                                                        
Query: 121  tacatcagctcgggaagggcaagcgtagaaaaaccgcanggcacttcaatctccta-ggc 179
            |||||||| | ||||||||||||| || |||||| ||| ||| ||||  ||||| | |||
Sbjct: 1967 tacatcagatggggaagggcaagcttacaaaaactgcaaggcgcttcggtctccaaaggc 1908

                                                                        
Query: 180  tcaaaccgttgcagctacaactgggtagagttttcagctaaaagctagggatcccctcct 239
            |||  |||||| | |||||||||  | | ||||||||||||||||||  |||   ||  |
Sbjct: 1907 tcac-ccgttgaaactacaactgc-tggggttttcagctaaaagctatagatgaactgat 1850

                                                                        
Query: 240  cattgngctaccgggcttgaatattcaggtccattctntgaagaggttatgctggaggaa 299
            || || || | ||||||||||||||| |||||| |||  ||||||||||||||||| || 
Sbjct: 1849 cagtgtgcaatcgggcttgaatattcgggtccactctccgaagaggttatgctggatgac 1790

                                                                        
Query: 300  cctgctgatgtcacgttgctgtttgaactattccttg---------gttggagttccgtc 350
            ||||| |||||||||||||||| ||||| ||||||||         ||||||||||| ||
Sbjct: 1789 cctgccgatgtcacgttgctgtgtgaaccattccttgtggattttggttggagttccatc 1730

                                                                        
Query: 351  tntntctgcctntctggggctgccgg-cgctgccccctcatcagctagtctcttcanaat 409
            | | | ||||| ||||||||||| || | ||||||| |||||||||| ||||||||  ||
Sbjct: 1729 tctctttgcctctctggggctgcaggtctctgcccc-tcatcagctaatctcttcaggat 1671

                                                                        
Query: 410  gttcataattgtcggaacaaattttgtcgacagcgaaaggagagctggaagaaatccatt 469
            |||||| || || ||||| ||||| ||||| || || ||||  |||||||||||||||||
Sbjct: 1670 gttcattatcgtgggaacgaatttcgtcgaaagtgataggacggctggaagaaatccatt 1611

                                                                        
Query: 470  tcggaattcgttggcaatgtctagttgtacccacatggctttcccgactaggaaaactac 529
            | |||| || |||||||||||||| ||||||||||||||||| || || |||||||| ||
Sbjct: 1610 ttggaactccttggcaatgtctagctgtacccacatggcttttccaacaaggaaaacaac 1551

                                
Query: 530  aaaaatgacggccaggtaaa 549
            ||| |||||  |||||||||
Sbjct: 1550 aaatatgactcccaggtaaa 1531



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 39   tattctacaacgtttcttacaaac 62
            ||||||||| ||||||||||||||
Sbjct: 2049 tattctacagcgtttcttacaaac 2026

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>dbj|AK070726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059E17, full
            insert sequence
          Length = 2994

 Score =  212 bits (107), Expect = 1e-51
 Identities = 359/440 (81%), Gaps = 14/440 (3%)
 Strand = Plus / Minus

                                                                        
Query: 121  tacatcagctcgggaagggcaagcgtagaaaaaccgcanggcacttcaatctccta-ggc 179
            |||||||| | ||||||||||||| || |||||| ||| ||| ||||  ||||| | |||
Sbjct: 2707 tacatcagatggggaagggcaagcttacaaaaactgcaaggcgcttcggtctccaaaggc 2648

                                                                        
Query: 180  tcaaaccgttgcagctacaactgggtagagttttcagctaaaagctagggatcccctcct 239
            |||  |||||| | |||||||||  | | ||||||||||||||||||  |||   ||  |
Sbjct: 2647 tcac-ccgttgaaactacaactgc-tggggttttcagctaaaagctatagatgaactgat 2590

                                                                        
Query: 240  cattgngctaccgggcttgaatattcaggtccattctntgaagaggttatgctggaggaa 299
            || || || | ||||||||||||||| |||||| |||  ||||||||||||||||| || 
Sbjct: 2589 cagtgtgcaatcgggcttgaatattcgggtccactctccgaagaggttatgctggatgac 2530

                                                                        
Query: 300  cctgctgatgtcacgttgctgtttgaactattccttg---------gttggagttccgtc 350
            ||||| |||||||||||||||| ||||| ||||||||         ||||||||||| ||
Sbjct: 2529 cctgccgatgtcacgttgctgtgtgaaccattccttgtggattttggttggagttccatc 2470

                                                                        
Query: 351  tntntctgcctntctggggctgccgg-cgctgccccctcatcagctagtctcttcanaat 409
            | | | ||||| ||||||||||| || | ||||||| |||||||||| ||||||||  ||
Sbjct: 2469 tctctttgcctctctggggctgcaggtctctgcccc-tcatcagctaatctcttcaggat 2411

                                                                        
Query: 410  gttcataattgtcggaacaaattttgtcgacagcgaaaggagagctggaagaaatccatt 469
            |||||| || || ||||| ||||| ||||| || || ||||  |||||||||||||||||
Sbjct: 2410 gttcattatcgtgggaacgaatttcgtcgaaagtgataggacggctggaagaaatccatt 2351

                                                                        
Query: 470  tcggaattcgttggcaatgtctagttgtacccacatggctttcccgactaggaaaactac 529
            | |||| || |||||||||||||| ||||||||||||||||| || || |||||||| ||
Sbjct: 2350 ttggaactccttggcaatgtctagctgtacccacatggcttttccaacaaggaaaacaac 2291

                                
Query: 530  aaaaatgacggccaggtaaa 549
            ||| |||||  |||||||||
Sbjct: 2290 aaatatgactcccaggtaaa 2271



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 39   tattctacaacgtttcttacaaac 62
            ||||||||| ||||||||||||||
Sbjct: 2789 tattctacagcgtttcttacaaac 2766

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>ref|NM_193615.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2421

 Score =  210 bits (106), Expect = 4e-51
 Identities = 258/309 (83%), Gaps = 11/309 (3%)
 Strand = Plus / Minus

                                                                        
Query: 251  cgggcttgaatattcaggtccattctntgaagaggttatgctggaggaacctgctgatgt 310
            ||||||||||||||| |||||| |||  ||||||||||||||||| || ||||| |||||
Sbjct: 2409 cgggcttgaatattcgggtccactctccgaagaggttatgctggatgaccctgccgatgt 2350

                                                                        
Query: 311  cacgttgctgtttgaactattccttg---------gttggagttccgtctntntctgcct 361
            ||||||||||| ||||| ||||||||         ||||||||||| ||| | | |||||
Sbjct: 2349 cacgttgctgtgtgaaccattccttgtggattttggttggagttccatctctctttgcct 2290

                                                                        
Query: 362  ntctggggctgccgg-cgctgccccctcatcagctagtctcttcanaatgttcataattg 420
             ||||||||||| || | ||||||| |||||||||| ||||||||  |||||||| || |
Sbjct: 2289 ctctggggctgcaggtctctgcccc-tcatcagctaatctcttcaggatgttcattatcg 2231

                                                                        
Query: 421  tcggaacaaattttgtcgacagcgaaaggagagctggaagaaatccatttcggaattcgt 480
            | ||||| ||||| ||||| || || ||||  |||||||||||||||||| |||| || |
Sbjct: 2230 tgggaacgaatttcgtcgaaagtgataggacggctggaagaaatccattttggaactcct 2171

                                                                        
Query: 481  tggcaatgtctagttgtacccacatggctttcccgactaggaaaactacaaaaatgacgg 540
            ||||||||||||| ||||||||||||||||| || || |||||||| ||||| |||||  
Sbjct: 2170 tggcaatgtctagctgtacccacatggcttttccaacaaggaaaacaacaaatatgactc 2111

                     
Query: 541  ccaggtaaa 549
            |||||||||
Sbjct: 2110 ccaggtaaa 2102

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  123 bits (62), Expect = 7e-25
 Identities = 281/351 (80%), Gaps = 14/351 (3%)
 Strand = Plus / Minus

                                                                            
Query: 121      tacatcagctcgggaagggcaagcgtagaaaaaccgcanggcacttcaatctccta-ggc 179
                |||||||| | ||||||||||||| || |||||| ||| ||| ||||  ||||| | |||
Sbjct: 22124501 tacatcagatggggaagggcaagcttacaaaaactgcaaggcgcttcggtctccaaaggc 22124442

                                                                            
Query: 180      tcaaaccgttgcagctacaactgggtagagttttcagctaaaagctagggatcccctcct 239
                |||  |||||| | |||||||||  | | ||||||||||||||||||  |||   ||  |
Sbjct: 22124441 tcac-ccgttgaaactacaactgc-tggggttttcagctaaaagctatagatgaactgat 22124384

                                                                            
Query: 240      cattgngctaccgggcttgaatattcaggtccattctntgaagaggttatgctggaggaa 299
                || || || | ||||||||||||||| |||||| |||  ||||||||||||||||| || 
Sbjct: 22124383 cagtgtgcaatcgggcttgaatattcgggtccactctccgaagaggttatgctggatgac 22124324

                                                                            
Query: 300      cctgctgatgtcacgttgctgtttgaactattcc---------ttggttggagttccgtc 350
                ||||| |||||||||||||||| ||||| |||||         |||||||||||||| ||
Sbjct: 22124323 cctgccgatgtcacgttgctgtgtgaaccattccttgtggattttggttggagttccatc 22124264

                                                                            
Query: 351      tntntctgcctntctggggctgccgg-cgctgccccctcatcagctagtctcttcanaat 409
                | | | ||||| ||||||||||| || | ||| |||||||||||||| ||||||||  ||
Sbjct: 22124263 tctctttgcctctctggggctgcaggtctctg-cccctcatcagctaatctcttcaggat 22124205

                                                                   
Query: 410      gttcataattgtcggaacaaattttgtcgacagcgaaaggagagctggaag 460
                |||||| || || ||||| ||||| ||||| || || ||||  ||||||||
Sbjct: 22124204 gttcattatcgtgggaacgaatttcgtcgaaagtgataggacggctggaag 22124154



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 461      aaatccatttcggaattcgttggcaatgtctagttgtacccacatggctttcccgactag 520
                |||||||||| |||| || |||||||||||||| ||||||||||||||||| || || ||
Sbjct: 22124059 aaatccattttggaactccttggcaatgtctagctgtacccacatggcttttccaacaag 22124000

                                             
Query: 521      gaaaactacaaaaatgacggccaggtaaa 549
                |||||| ||||| |||||  |||||||||
Sbjct: 22123999 gaaaacaacaaatatgactcccaggtaaa 22123971



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 39       tattctacaacgtttcttacaaac 62
                ||||||||| ||||||||||||||
Sbjct: 22124583 tattctacagcgtttcttacaaac 22124560

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>dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1112D09
          Length = 125920

 Score =  123 bits (62), Expect = 7e-25
 Identities = 281/351 (80%), Gaps = 14/351 (3%)
 Strand = Plus / Minus

                                                                         
Query: 121   tacatcagctcgggaagggcaagcgtagaaaaaccgcanggcacttcaatctccta-ggc 179
             |||||||| | ||||||||||||| || |||||| ||| ||| ||||  ||||| | |||
Sbjct: 19987 tacatcagatggggaagggcaagcttacaaaaactgcaaggcgcttcggtctccaaaggc 19928

                                                                         
Query: 180   tcaaaccgttgcagctacaactgggtagagttttcagctaaaagctagggatcccctcct 239
             |||  |||||| | |||||||||  | | ||||||||||||||||||  |||   ||  |
Sbjct: 19927 tcac-ccgttgaaactacaactgc-tggggttttcagctaaaagctatagatgaactgat 19870

                                                                         
Query: 240   cattgngctaccgggcttgaatattcaggtccattctntgaagaggttatgctggaggaa 299
             || || || | ||||||||||||||| |||||| |||  ||||||||||||||||| || 
Sbjct: 19869 cagtgtgcaatcgggcttgaatattcgggtccactctccgaagaggttatgctggatgac 19810

                                                                         
Query: 300   cctgctgatgtcacgttgctgtttgaactattcc---------ttggttggagttccgtc 350
             ||||| |||||||||||||||| ||||| |||||         |||||||||||||| ||
Sbjct: 19809 cctgccgatgtcacgttgctgtgtgaaccattccttgtggattttggttggagttccatc 19750

                                                                         
Query: 351   tntntctgcctntctggggctgccgg-cgctgccccctcatcagctagtctcttcanaat 409
             | | | ||||| ||||||||||| || | ||| |||||||||||||| ||||||||  ||
Sbjct: 19749 tctctttgcctctctggggctgcaggtctctg-cccctcatcagctaatctcttcaggat 19691

                                                                
Query: 410   gttcataattgtcggaacaaattttgtcgacagcgaaaggagagctggaag 460
             |||||| || || ||||| ||||| ||||| || || ||||  ||||||||
Sbjct: 19690 gttcattatcgtgggaacgaatttcgtcgaaagtgataggacggctggaag 19640



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                         
Query: 461   aaatccatttcggaattcgttggcaatgtctagttgtacccacatggctttcccgactag 520
             |||||||||| |||| || |||||||||||||| ||||||||||||||||| || || ||
Sbjct: 19545 aaatccattttggaactccttggcaatgtctagctgtacccacatggcttttccaacaag 19486

                                          
Query: 521   gaaaactacaaaaatgacggccaggtaaa 549
             |||||| ||||| |||||  |||||||||
Sbjct: 19485 gaaaacaacaaatatgactcccaggtaaa 19457



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    tattctacaacgtttcttacaaac 62
             ||||||||| ||||||||||||||
Sbjct: 20069 tattctacagcgtttcttacaaac 20046

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>gb|AY104942.1| Zea mays PCO129434 mRNA sequence
          Length = 1061

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 195/250 (78%), Gaps = 3/250 (1%)
 Strand = Plus / Minus

                                                                       
Query: 334 ttggttggagttccgtctntntctgcctntctggggc---tgccggcgctgccccctcat 390
           |||||||||| ||| ||| | ||||||| ||||||||   ||| || |||   ||||| |
Sbjct: 481 ttggttggagctccatctctctctgcctctctggggcggctgcaggtgcttgaccctcgt 422

                                                                       
Query: 391 cagctagtctcttcanaatgttcataattgtcggaacaaattttgtcgacagcgaaagga 450
           | |||| ||||||||  |||||||| |  || || ||||| || |||||||| |||||||
Sbjct: 421 cggctaatctcttcaggatgttcattacagtgggcacaaacttcgtcgacagtgaaagga 362

                                                                       
Query: 451 gagctggaagaaatccatttcggaattcgttggcaatgtctagttgtacccacatggctt 510
             || ||||||||||| | | |||||||  || | || |||  ||| ||||| |||||||
Sbjct: 361 tggcaggaagaaatccgtgttggaattccctgccgatttctgattgcacccaaatggctt 302

                                                                       
Query: 511 tcccgactaggaaaactacaaaaatgacggccaggtaaaacgggttcctcagtaatgtca 570
           | || || ||  |||  ||||| ||| |   |||||||| ||||||||||||||||||||
Sbjct: 301 ttccaacgagataaatcacaaatatggcaaacaggtaaagcgggttcctcagtaatgtca 242

                     
Query: 571 taaactcgtt 580
           | ||||||||
Sbjct: 241 tgaactcgtt 232

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>gb|AC185139.2| Pan troglodytes BAC clone CH251-174C16 from chromosome 2, complete
              sequence
          Length = 166804

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    acttcaatctcctaggctcaa 183
              |||||||||||||||||||||
Sbjct: 120745 acttcaatctcctaggctcaa 120725

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>gb|AY359583.1| Zea mays B73 Etr2-like ethylene receptor (ETR61) pseudogene, partial
            sequence
          Length = 9532

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 42   tctacaacgtttcttacaaac 62
            |||||||||||||||||||||
Sbjct: 2855 tctacaacgtttcttacaaac 2835

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>emb|BX908793.14| Zebrafish DNA sequence from clone DKEY-104G4 in linkage group 3,
             complete sequence
          Length = 102377

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 108   cacataattttcatacatcag 128
             |||||||||||||||||||||
Sbjct: 47036 cacataattttcatacatcag 47056

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>gb|AC104651.2| Homo sapiens BAC clone RP11-217P16 from 2, complete sequence
          Length = 106954

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 163   acttcaatctcctaggctcaa 183
             |||||||||||||||||||||
Sbjct: 45203 acttcaatctcctaggctcaa 45183

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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 49      cgtttcttacaaacgattcc 68
               ||||||||||||||||||||
Sbjct: 1412044 cgtttcttacaaacgattcc 1412025

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>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome
          Length = 569630

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    actcttccacataattttca 120
              ||||||||||||||||||||
Sbjct: 549956 actcttccacataattttca 549975

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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     ctacaacgtttcttacaaac 62
              ||||||||||||||||||||
Sbjct: 800240 ctacaacgtttcttacaaac 800221

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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     ctacaacgtttcttacaaac 62
              ||||||||||||||||||||
Sbjct: 800135 ctacaacgtttcttacaaac 800116

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>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete
              genome
          Length = 701046

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    actcttccacataattttca 120
              ||||||||||||||||||||
Sbjct: 669745 actcttccacataattttca 669764

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>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome
          Length = 569553

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    actcttccacataattttca 120
              ||||||||||||||||||||
Sbjct: 377774 actcttccacataattttca 377755

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>gb|AC106017.11| Homo sapiens chromosome 17, clone RP11-744A16, complete sequence
          Length = 178625

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    tcaatctcctaggctcaaac 185
              ||||||||||||||||||||
Sbjct: 122595 tcaatctcctaggctcaaac 122576

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>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome
          Length = 535825

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    actcttccacataattttca 120
              ||||||||||||||||||||
Sbjct: 432965 actcttccacataattttca 432984

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>gb|AF522077.2| Lactobacillus plantarum strain NC8 bacteriocin production locus,
            partial sequence
          Length = 12350

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  ttcaatctcctaggctcaaa 184
            ||||||||||||||||||||
Sbjct: 6694 ttcaatctcctaggctcaaa 6675

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>gb|AC005099.2| Homo sapiens BAC clone CTA-351J1 from 7, complete sequence
          Length = 131611

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   cttcaatctcctaggctcaa 183
             ||||||||||||||||||||
Sbjct: 85016 cttcaatctcctaggctcaa 84997

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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     ctacaacgtttcttacaaac 62
              ||||||||||||||||||||
Sbjct: 783150 ctacaacgtttcttacaaac 783131

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>emb|Z86064.2|HS435D1 Human DNA sequence from clone RP3-435D1 on chromosome Xq25 Contains the
             3' end of the HS6ST2 gene for heparan sulfate
             6-O-sulfotransferase 2, a novel gene and the 3' end of a
             novel gene, complete sequence
          Length = 184975

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   tcaatctcctaggctcaaac 185
             ||||||||||||||||||||
Sbjct: 17972 tcaatctcctaggctcaaac 17953

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>emb|AL359983.7| Human DNA sequence from clone RP11-139L21 on chromosome 1 Contains part
              of a novel gene (FLJ10157), complete sequence
          Length = 166254

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 444    gaaaggagagctggaagaaa 463
              ||||||||||||||||||||
Sbjct: 153605 gaaaggagagctggaagaaa 153624

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>emb|AL353715.21| Human DNA sequence from clone CTD-3184A7 on chromosome 20 Contains the
             5' end of the GMEB2 gene for glucocorticoid modulatory
             element binding protein 2, the gene for SCG10-like protein
             (SCLIP) (ortholog of rabbit neuroplasticin-2 (NPC2)), the
             TNFRSF6B gene for member 6 (decoy) of tumor necrosis
             factor receptor superfamily, a novel gene and four CpG
             islands, complete sequence
          Length = 92458

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   tcaatctcctaggctcaaac 185
             ||||||||||||||||||||
Sbjct: 17086 tcaatctcctaggctcaaac 17067

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>emb|X94434.1|LPATOVGNS L.plantarum pln[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,R,S,T,U,V] genes and
            ORF1
          Length = 16139

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  ttcaatctcctaggctcaaa 184
            ||||||||||||||||||||
Sbjct: 2070 ttcaatctcctaggctcaaa 2051

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>emb|AL935253.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 2/11
          Length = 324050

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   ttcaatctcctaggctcaaa 184
             ||||||||||||||||||||
Sbjct: 24642 ttcaatctcctaggctcaaa 24623

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>emb|AL646055.10| Mouse DNA sequence from clone RP23-382C18 on chromosome 11 Contains a
             aldo-keto reductase family 1 member B3 (aldose reductase)
             (Akr1b3) pseudogene, the gene for a novel protein similar
             to human methionine adenosyltransferase II beta (MAT2B),
             the Hmmr gene for hyaluronan mediated motility receptor
             (RHAMM), the gene for a novel protein (D11Ertd603e), the
             Ccng1 gene for cyclin G1 and three CpG islands, complete
             sequence
          Length = 193551

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   cacataattttcatacatca 127
             ||||||||||||||||||||
Sbjct: 54518 cacataattttcatacatca 54537

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>gb|AC093153.2| Homo sapiens chromosome 1 clone RP11-477C23, complete sequence
          Length = 194427

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   gaaaggagagctggaagaaa 463
             ||||||||||||||||||||
Sbjct: 83875 gaaaggagagctggaagaaa 83894

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>gb|AC144506.1| Homo sapiens chromosome 17, clone XXfos-800635C12, complete sequence
          Length = 36963

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   tcaatctcctaggctcaaac 185
             ||||||||||||||||||||
Sbjct: 12647 tcaatctcctaggctcaaac 12666

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>gb|AC139077.2| Homo sapiens chromosome 17, clone XXfos-88899C12, complete sequence
          Length = 37411

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   tcaatctcctaggctcaaac 185
             ||||||||||||||||||||
Sbjct: 11043 tcaatctcctaggctcaaac 11062

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>gb|AC007952.15| Homo sapiens chromosome 17, clone RP11-160E2, complete sequence
          Length = 158103

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   tcaatctcctaggctcaaac 185
             ||||||||||||||||||||
Sbjct: 86781 tcaatctcctaggctcaaac 86762

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>gb|AC084452.1|AC084452 Caenorhabditis briggsae cosmid CB024D21, complete sequence
          Length = 93590

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   cggaattcgttggcaatgtc 490
             ||||||||||||||||||||
Sbjct: 55740 cggaattcgttggcaatgtc 55721

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>gb|AC140106.1| Homo sapiens chromosome 17, clone XXfos-801239H9, complete sequence
          Length = 40948

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   tcaatctcctaggctcaaac 185
             ||||||||||||||||||||
Sbjct: 13690 tcaatctcctaggctcaaac 13671

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>gb|AF217796.1|AF217796 Homo sapiens SCG10 like-protein, helicase-like protein NHL, M68, and
             ADP-ribosylation factor related protein 1 (ARFRP1) genes,
             complete cds
          Length = 114793

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   tcaatctcctaggctcaaac 185
             ||||||||||||||||||||
Sbjct: 10277 tcaatctcctaggctcaaac 10258

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>emb|AL132777.4|CNS01DTI Human chromosome 14 DNA sequence BAC R-307P22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 191464

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    tcaatctcctaggctcaaac 185
              ||||||||||||||||||||
Sbjct: 187703 tcaatctcctaggctcaaac 187722

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>emb|AL049874.3|CNS0000Q Human chromosome 14 DNA sequence BAC R-1042B17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 193047

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    tcaatctcctaggctcaaac 185
              ||||||||||||||||||||
Sbjct: 164768 tcaatctcctaggctcaaac 164749

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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     ctacaacgtttcttacaaac 62
              ||||||||||||||||||||
Sbjct: 800239 ctacaacgtttcttacaaac 800220

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>gb|AC005389.1|AC005389 Homo sapiens chromosome 17, clone hRPK.601_N_13, complete sequence
          Length = 120359

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    tcaatctcctaggctcaaac 185
              ||||||||||||||||||||
Sbjct: 107461 tcaatctcctaggctcaaac 107442

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>gb|AC157784.2| Mus musculus chromosome 18, clone RP24-163C18, complete sequence
          Length = 182283

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    tcagctaaaagctagggatc 232
              ||||||||||||||||||||
Sbjct: 107758 tcagctaaaagctagggatc 107739


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,117,895
Number of Sequences: 3902068
Number of extensions: 4117895
Number of successful extensions: 87089
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86873
Number of HSP's gapped (non-prelim): 207
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result