ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK101024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 3e-80
2dbj|AK058254.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 3e-80
3dbj|AK070828.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 8e-78
4gb|AY105653.1| Zea mays PCO079171 mRNA sequence 266 3e-68
5ref|NM_197228.1| Oryza sativa (japonica cultivar-group) putative... 131 1e-27
6gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 101 1e-18
7gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 101 1e-18
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 101 1e-18
10gb|U01162.1|U01162 Amaranthus hypochondriacus C4 photosynthetic ... 56 5e-05
11emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59k... 50 0.003
12emb|AJ404642.1|CAR404642 Cicer arietinum partial ORF for NAD-dep... 48 0.013
13emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mit... 44 0.20
14gb|AY107471.1| Zea mays PCO115183 mRNA sequence 44 0.20
15ref|XM_965514.1| PREDICTED: Tribolium castaneum similar to CG131... 42 0.81
16gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, compl... 42 0.81
17gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-2... 42 0.81
18dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
19gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D... 42 0.81
20dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
21gb|AC115065.11| Mus musculus chromosome 3, clone RP24-401H12, co... 40 3.2
22gb|AC131110.3| Mus musculus BAC clone RP23-387J23 from chromosom... 40 3.2
23gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cance... 40 3.2
24gb|AC149333.2| Phakopsora pachyrhizi clone JGIAFNA-25D11, comple... 40 3.2

>dbj|AK101024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150D19, full
            insert sequence
          Length = 2454

 Score =  305 bits (154), Expect = 3e-80
 Identities = 222/245 (90%)
 Strand = Plus / Minus

                                                                        
Query: 3    atcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgat 62
            ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 2004 atcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcctgat 1945

                                                                        
Query: 63   acttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagc 122
            |||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||
Sbjct: 1944 acttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgc 1885

                                                                        
Query: 123  aaggcactcagctgcagcatgtancatgccatccgatatatgccgagcacctgaaagaag 182
            ||||||||||||||| |  || | ||||||||| |  |||||||||||||||||||||||
Sbjct: 1884 aaggcactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaag 1825

                                                                        
Query: 183  ggctcctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttt 242
            |||||||||||| || ||||||||||||||||| ||||||||||||||||| || |||| 
Sbjct: 1824 ggctcctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttg 1765

                 
Query: 243  tctac 247
            |||||
Sbjct: 1764 tctac 1760



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>dbj|AK058254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C11, full
           insert sequence
          Length = 769

 Score =  305 bits (154), Expect = 3e-80
 Identities = 222/245 (90%)
 Strand = Plus / Minus

                                                                       
Query: 3   atcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgat 62
           ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 369 atcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcctgat 310

                                                                       
Query: 63  acttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagc 122
           |||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||
Sbjct: 309 acttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgc 250

                                                                       
Query: 123 aaggcactcagctgcagcatgtancatgccatccgatatatgccgagcacctgaaagaag 182
           ||||||||||||||| |  || | ||||||||| |  |||||||||||||||||||||||
Sbjct: 249 aaggcactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaag 190

                                                                       
Query: 183 ggctcctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttt 242
           |||||||||||| || ||||||||||||||||| ||||||||||||||||| || |||| 
Sbjct: 189 ggctcctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttg 130

                
Query: 243 tctac 247
           |||||
Sbjct: 129 tctac 125



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>dbj|AK070828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065M02, full
            insert sequence
          Length = 2357

 Score =  297 bits (150), Expect = 8e-78
 Identities = 221/245 (90%)
 Strand = Plus / Minus

                                                                        
Query: 3    atcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgat 62
            ||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||
Sbjct: 1923 atcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcccgat 1864

                                                                        
Query: 63   acttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagc 122
            |||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||
Sbjct: 1863 acttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgc 1804

                                                                        
Query: 123  aaggcactcagctgcagcatgtancatgccatccgatatatgccgagcacctgaaagaag 182
            ||||||||||||||| |  || | ||||||||| |  |||||||||||||||||||||||
Sbjct: 1803 aaggcactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaag 1744

                                                                        
Query: 183  ggctcctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttt 242
            |||||||||||| || ||||||||||||||||| ||||||||||||||||| || |||| 
Sbjct: 1743 ggctcctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttg 1684

                 
Query: 243  tctac 247
            |||||
Sbjct: 1683 tctac 1679



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>gb|AY105653.1| Zea mays PCO079171 mRNA sequence
          Length = 862

 Score =  266 bits (134), Expect = 3e-68
 Identities = 208/233 (89%)
 Strand = Plus / Minus

                                                                       
Query: 4   tcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgata 63
           |||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct: 368 tcttcagcaacagcggcacggacgactgctgcgccgacacgtgcggtgatgtgcctaata 309

                                                                       
Query: 64  cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 123
           || || |  ||||| ||||||||||||||||||||| | || |||||||||||||| || 
Sbjct: 308 ctggagaccgaagggaagaggattccttttcgaatttcgtcgtctgtgatgtatgatgcc 249

                                                                       
Query: 124 aggcactcagctgcagcatgtancatgccatccgatatatgccgagcacctgaaagaagg 183
           |||||||||||||| || || | ||||||||| || | |||||| |||||||||||||||
Sbjct: 248 aggcactcagctgctgcttgaagcatgccatctgaaacatgccgggcacctgaaagaagg 189

                                                                
Query: 184 gctcctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcata 236
           || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 188 gcacctaaaccaatcccaggaaatagatacatgttgtttgcttgattagcata 136



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>ref|NM_197228.1| Oryza sativa (japonica cultivar-group) putative mitochondrial
            NAD+-dependent malic enzyme protein (OSJNBb0073N24.24),
            mRNA
          Length = 1766

 Score =  131 bits (66), Expect = 1e-27
 Identities = 107/121 (88%)
 Strand = Plus / Minus

                                                                        
Query: 127  cactcagctgcagcatgtancatgccatccgatatatgccgagcacctgaaagaagggct 186
            ||||||||||| |  || | ||||||||| |  |||||||||||||||||||||||||||
Sbjct: 1559 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 1500

                                                                        
Query: 187  cctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 246
            |||||||| || ||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 1499 cctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 1440

             
Query: 247  c 247
            |
Sbjct: 1439 c 1439



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>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBa0062C05 map S21174S, complete sequence
          Length = 178867

 Score =  101 bits (51), Expect = 1e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                        
Query: 3    atcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgat 62
            ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 2120 atcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcctgat 2061

               
Query: 63   act 65
            |||
Sbjct: 2060 act 2058



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                        
Query: 64   cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 123
            ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 1952 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 1893

                
Query: 124  aggc 127
            ||||
Sbjct: 1892 aggc 1889



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 127  cactcagctgcagcatgtancatgccatccgatatatgccgagcacctgaaagaagggct 186
            ||||||||||| |  || | ||||||||| |  |||||||||||||||||||||||||||
Sbjct: 1498 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 1439

                    
Query: 187  cctaaacc 194
            ||||||||
Sbjct: 1438 cctaaacc 1431



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                              
Query: 198  cccaggaaacagatacatgttgtttgcttgattagcatagccttttctac 247
            |||||||||||||||||| ||||||||||||||||| || |||| |||||
Sbjct: 1338 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtctac 1289



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>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
             sequence
          Length = 130058

 Score =  101 bits (51), Expect = 1e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                         
Query: 3     atcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgat 62
             ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 67978 atcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcctgat 67919

                
Query: 63    act 65
             |||
Sbjct: 67918 act 67916



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                         
Query: 64    cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 123
             ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 67810 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 67751

                 
Query: 124   aggc 127
             ||||
Sbjct: 67750 aggc 67747



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 127   cactcagctgcagcatgtancatgccatccgatatatgccgagcacctgaaagaagggct 186
             ||||||||||| |  || | ||||||||| |  |||||||||||||||||||||||||||
Sbjct: 67356 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 67297

                     
Query: 187   cctaaacc 194
             ||||||||
Sbjct: 67296 cctaaacc 67289



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 198   cccaggaaacagatacatgttgtttgcttgattagcatagccttttctac 247
             |||||||||||||||||| ||||||||||||||||| || |||| |||||
Sbjct: 67196 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtctac 67147



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  101 bits (51), Expect = 1e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                            
Query: 3        atcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgat 62
                ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 18706700 atcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcctgat 18706641

                   
Query: 63       act 65
                |||
Sbjct: 18706640 act 18706638



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 64       cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 123
                ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 18706532 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 18706473

                    
Query: 124      aggc 127
                ||||
Sbjct: 18706472 aggc 18706469



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                            
Query: 127      cactcagctgcagcatgtancatgccatccgatatatgccgagcacctgaaagaagggct 186
                ||||||||||| |  || | ||||||||| |  |||||||||||||||||||||||||||
Sbjct: 18706078 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 18706019

                        
Query: 187      cctaaacc 194
                ||||||||
Sbjct: 18706018 cctaaacc 18706011



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                  
Query: 198      cccaggaaacagatacatgttgtttgcttgattagcatagccttttctac 247
                |||||||||||||||||| ||||||||||||||||| || |||| |||||
Sbjct: 18705918 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtctac 18705869



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  101 bits (51), Expect = 1e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                            
Query: 3        atcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgat 62
                ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 18717553 atcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcctgat 18717494

                   
Query: 63       act 65
                |||
Sbjct: 18717493 act 18717491



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 64       cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 123
                ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 18717385 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 18717326

                    
Query: 124      aggc 127
                ||||
Sbjct: 18717325 aggc 18717322



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                            
Query: 127      cactcagctgcagcatgtancatgccatccgatatatgccgagcacctgaaagaagggct 186
                ||||||||||| |  || | ||||||||| |  |||||||||||||||||||||||||||
Sbjct: 18716931 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 18716872

                        
Query: 187      cctaaacc 194
                ||||||||
Sbjct: 18716871 cctaaacc 18716864



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                  
Query: 198      cccaggaaacagatacatgttgtttgcttgattagcatagccttttctac 247
                |||||||||||||||||| ||||||||||||||||| || |||| |||||
Sbjct: 18716771 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtctac 18716722



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>gb|U01162.1|U01162 Amaranthus hypochondriacus C4 photosynthetic NAD-dependent malic
            enzyme subunit alpha precursor mRNA, complete cds
          Length = 2283

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                        
Query: 172  cctgaaagaagggctcctaaaccaatcccaggaaacagatacatgttgtttgcttgatta 231
            |||||||| ||| | |||| ||||||||||||||| || |||||||||||| | ||||||
Sbjct: 1628 cctgaaaggaggacacctagaccaatcccaggaaaaaggtacatgttgtttccctgatta 1569



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>emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59kDa subunit of the
            NAD+-dependent malic enzyme
          Length = 2188

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 166  cgagcacctgaaagaagggctcctaaaccaatcccaggaaacagatacatgttgtttgct 225
            ||||| || |||||||| |||||||  ||||| ||||| || ||||||||||| || |||
Sbjct: 1584 cgagcgccagaaagaagagctcctagcccaatgccagggaagagatacatgttattcgct 1525

                 
Query: 226  tgatt 230
            |||||
Sbjct: 1524 tgatt 1520



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>emb|AJ404642.1|CAR404642 Cicer arietinum partial ORF for NAD-dependent malic enzyme (malate
            oxidoreductase), exons 1-4
          Length = 1718

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 95/119 (79%)
 Strand = Plus / Minus

                                                                        
Query: 112  atgtatgaagcaaggcactcagctgcagcatgtancatgccatccgatatatgccgagca 171
            ||||||||||||||||| ||||| || || || | ||| ||||| |  ||| |  |||||
Sbjct: 1104 atgtatgaagcaaggcattcagcagctgcctgcaacattccatctgtaataagatgagca 1045

                                                                       
Query: 172  cctgaaagaagggctcctaaaccaatcccaggaaacagatacatgttgtttgcttgatt 230
            ||||| ||||| | ||| |||||||| || || || || ||||| || |||||||||||
Sbjct: 1044 cctgacagaagtgttcccaaaccaattcctgggaaaaggtacatattatttgcttgatt 986



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>emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mitochondrial NAD+-dependent
            malic enzyme (malate dehydrogenase)
          Length = 2251

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 127  cactcagctgcagcatgtancatgccatc 155
            |||||||||||||| |||| |||||||||
Sbjct: 1656 cactcagctgcagcctgtaacatgccatc 1628



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>gb|AY107471.1| Zea mays PCO115183 mRNA sequence
          Length = 1366

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                       
Query: 130 tcagctgcagcatgtancatgccatccgatatatgccgagcacctgaaagaagggctcct 189
           ||||||||||| || | ||| ||||| || |||  ||||||||| || ||||||| ||| 
Sbjct: 752 tcagctgcagcctgcagcattccatcagagataacccgagcaccagacagaagggttcca 693

                                                    
Query: 190 aaaccaatcccaggaaacagatacatgttgtttgcttgatt 230
           |  || || |||||||| || |||||||||||  |||||||
Sbjct: 692 agccctattccaggaaagaggtacatgttgttcccttgatt 652



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>ref|XM_965514.1| PREDICTED: Tribolium castaneum similar to CG1318-PA, isoform A
            (LOC659187), mRNA
          Length = 1797

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 149  tgccatccgatatatgccgagcacc 173
            |||||||||||||||| ||||||||
Sbjct: 1487 tgccatccgatatatggcgagcacc 1463



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>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence
          Length = 133862

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   agatacatgttgtttgcttga 228
             |||||||||||||||||||||
Sbjct: 67572 agatacatgttgtttgcttga 67552



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>gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-22c10, complete
             sequence
          Length = 123020

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 202   ggaaacagatacatgttgtttgcttgatt 230
             |||||||| ||||||||||| ||||||||
Sbjct: 35933 ggaaacaggtacatgttgttggcttgatt 35961



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 24       ggcgactgcagcgccgacacg 44
                |||||||||||||||||||||
Sbjct: 24626953 ggcgactgcagcgccgacacg 24626933



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>gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D23, complete sequence
          Length = 98620

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 208  agatacatgttgtttgcttga 228
            |||||||||||||||||||||
Sbjct: 9477 agatacatgttgtttgcttga 9457



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>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0026F07
          Length = 137354

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 24     ggcgactgcagcgccgacacg 44
              |||||||||||||||||||||
Sbjct: 135213 ggcgactgcagcgccgacacg 135193



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>gb|AC115065.11| Mus musculus chromosome 3, clone RP24-401H12, complete sequence
          Length = 157225

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   aggcactcagctgcagcatg 143
             ||||||||||||||||||||
Sbjct: 26004 aggcactcagctgcagcatg 25985



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>gb|AC131110.3| Mus musculus BAC clone RP23-387J23 from chromosome 6, complete sequence
          Length = 205463

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    agaagggctcctaaaccaat 197
              ||||||||||||||||||||
Sbjct: 101346 agaagggctcctaaaccaat 101327



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>gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190237

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    agaagggctcctaaaccaat 197
              ||||||||||||||||||||
Sbjct: 182042 agaagggctcctaaaccaat 182061



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>gb|AC149333.2| Phakopsora pachyrhizi clone JGIAFNA-25D11, complete sequence
          Length = 37057

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     atcttcatcaacagcagcac 22
             ||||||||||||||||||||
Sbjct: 13563 atcttcatcaacagcagcac 13582


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,274,383
Number of Sequences: 3902068
Number of extensions: 2274383
Number of successful extensions: 41301
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41208
Number of HSP's gapped (non-prelim): 92
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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