Clone Information

BLAST Search Result

Clone Name	rbags38f04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL31_NICGU (P46290) 60S ribosomal protein L31	174	1e-43
2	RL31_PERFR (Q9M573) 60S ribosomal protein L31	174	1e-43
3	RL312_ARATH (P51420) 60S ribosomal protein L31-2	167	1e-41
4	RL311_ARATH (Q9STR1) 60S ribosomal protein L31-1	166	3e-41
5	RL31_PANGI (Q9MAV7) 60S ribosomal protein L31	166	5e-41
6	RL31_PICMA (O65071) 60S ribosomal protein L31	164	1e-40
7	RL31_CHLRE (P45841) 60S ribosomal protein L31	124	1e-28
8	RL31_CYAPA (Q9XGL4) 60S ribosomal protein L31	123	4e-28
9	RL31_SPOFR (Q7KF90) 60S ribosomal protein L31	118	1e-26
10	RL31_HELVI (Q9GP16) 60S ribosomal protein L31	118	1e-26
11	RL31_PAROL (Q9IA76) 60S ribosomal protein L31	115	1e-25
12	RL31_ICTPU (Q90YT7) 60S ribosomal protein L31	113	3e-25
13	RL31_RAT (P62902) 60S ribosomal protein L31	111	1e-24
14	RL31_PIG (P62901) 60S ribosomal protein L31	111	1e-24
15	RL31_MOUSE (P62900) 60S ribosomal protein L31	111	1e-24
16	RL31_HUMAN (P62899) 60S ribosomal protein L31	111	1e-24
17	RL31_XENLA (Q6NUH0) 60S ribosomal protein L31	110	2e-24
18	RL31_DROME (Q9V597) 60S ribosomal protein L31	110	3e-24
19	RL31_DROVI (O18602) 60S ribosomal protein L31	108	9e-24
20	RL31_YEAST (P04649) 60S ribosomal protein L31 (L34) (YL28)	105	1e-22
21	RL31_ASHGO (Q757D7) 60S ribosomal protein L31	105	1e-22
22	RL31_CANGA (Q6FWF4) 60S ribosomal protein L31	103	3e-22
23	RL31_AEDAE (Q9GN74) 60S ribosomal protein L31	102	9e-22
24	RL31_CAEEL (Q9U332) 60S ribosomal protein L31	96	5e-20
25	RL31_SCHPO (Q9URX6) 60S ribosomal protein L31	88	2e-17
26	RL31_METJA (P54009) 50S ribosomal protein L31e	45	2e-04
27	RL31_METKA (Q8TUY4) 50S ribosomal protein L31e	42	0.001
28	RL31_METMP (Q6M155) 50S ribosomal protein L31e	39	0.009
29	RL31_PYRFU (Q8U3S7) 50S ribosomal protein L31e	37	0.026
30	RL31_METTH (O27649) 50S ribosomal protein L31e	37	0.034
31	RL31_PYRAB (Q9UYI7) 50S ribosomal protein L31e	36	0.076
32	RL31_PYRHO (P58189) 50S ribosomal protein L31e	35	0.100
33	NFM_HUMAN (P07197) Neurofilament triplet M protein (160 kDa neur...	35	0.13
34	RL31_AERPE (Q9YD25) 50S ribosomal protein L31e	34	0.22
35	RL31_ARCFU (O28213) 50S ribosomal protein L31e	34	0.29
36	PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)	34	0.29
37	RL31_METAC (Q8TIN3) 50S ribosomal protein L31e	32	0.85
38	GDF6_BOVIN (P55106) Growth/differentiation factor 6 precursor (G...	32	0.85
39	IF2C_PHAVU (P57997) Translation initiation factor IF-2, chloropl...	32	1.1
40	LOXL1_HUMAN (Q08397) Lysyl oxidase homolog 1 precursor (EC 1.4.3...	32	1.4
41	RL31_METMA (Q8PYQ4) 50S ribosomal protein L31e	32	1.4
42	FOXP4_HUMAN (Q8IVH2) Forkhead box protein P4 (Fork head-related ...	31	1.9
43	ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)	30	3.2
44	EMS_DROME (P18488) Homeotic protein empty spiracles	30	3.2
45	YBOX1_RAT (P62961) Nuclease sensitive element-binding protein 1 ...	30	4.2
46	YBOX1_MOUSE (P62960) Nuclease sensitive element-binding protein ...	30	4.2
47	YBOX1_HUMAN (P67809) Nuclease sensitive element-binding protein ...	30	4.2
48	YBOX1_BOVIN (P67808) Nuclease sensitive element-binding protein ...	30	4.2
49	PMS2_MOUSE (P54279) PMS1 protein homolog 2 (DNA mismatch repair ...	30	5.5
50	ZN592_MOUSE (Q8BHZ4) Zinc finger protein 592 (Zfp-592)	30	5.5
51	MKL2_MOUSE (P59759) MKL/myocardin-like protein 2 (Myocardin-rela...	30	5.5
52	KCNN3_RAT (P70605) Small conductance calcium-activated potassium...	30	5.5
53	GSLG1_MOUSE (Q61543) Golgi apparatus protein 1 precursor (Golgi ...	30	5.5
54	YPRR_ECOLI (P03848) Hypothetical protein repA4	30	5.5
55	YBOX1_CHICK (Q06066) Nuclease sensitive element-binding protein ...	29	7.2
56	MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substra...	29	7.2
57	PTH_SILPO (Q5LV91) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)	29	7.2
58	PRB4L_HUMAN (P10162) Basic salivary proline-rich protein 4 allel...	29	7.2
59	PRPH_MESAU (P06680) Acidic proline-rich protein HP43A precursor	29	7.2
60	PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allel...	29	7.2
61	CORO_SCHPO (O13923) Coronin-like protein crn1	29	7.2
62	EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400...	29	7.2
63	APBA1_RAT (O35430) Amyloid beta A4 precursor protein-binding fam...	29	7.2
64	PRB4M_HUMAN (P10161) Basic salivary proline-rich protein 4 allel...	29	7.2
65	ZN592_HUMAN (Q92610) Zinc finger protein 592	29	9.3
66	RS3_AMBME (P79891) 40S ribosomal protein S3	29	9.3
67	PKHA4_RAT (P60669) Pleckstrin homology domain-containing family ...	29	9.3

>RL31_NICGU (P46290) 60S ribosomal protein L31|
          Length = 120

 Score =  174 bits (442), Expect = 1e-43
 Identities = 88/123 (71%), Positives = 98/123 (79%)
 Frame = -3

Query: 478 MSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRID 299
           MS+K +    RK+EVVTREYT+NLHKRLH CTFKKKAP AIKEIRKFAQKAMGT DVR+D
Sbjct: 1   MSDKTKG---RKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVD 57

Query: 298 VKLNKHIWSSGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVE 119
           VKLNK IWS GI              RND+EDAKEELYSLVTVAE+P +GLKGLGTK++E
Sbjct: 58  VKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIE 117

Query: 118 DED 110
           DED
Sbjct: 118 DED 120

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>RL31_PERFR (Q9M573) 60S ribosomal protein L31|
          Length = 121

 Score =  174 bits (442), Expect = 1e-43
 Identities = 84/114 (73%), Positives = 96/114 (84%)
 Frame = -3

Query: 451 PRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWS 272
           PRK+EVV+REYT+NLHKRLHGCTFKKKAP AIKEIRKFAQKAMGT DVR+DVKLNKHIWS
Sbjct: 8   PRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHIWS 67

Query: 271 SGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDED 110
            GI              RND+EDAKEELYSLVTVAE+P+ GLKGLGT+V+++E+
Sbjct: 68  RGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121

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>RL312_ARATH (P51420) 60S ribosomal protein L31-2|
          Length = 119

 Score =  167 bits (424), Expect = 1e-41
 Identities = 85/123 (69%), Positives = 96/123 (78%)
 Frame = -3

Query: 478 MSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRID 299
           MSEKK     RK+EV+TREYT+NLH+RLH CTFKKKAP AIKEIRKFA+KAMGT DVR+D
Sbjct: 1   MSEKKG----RKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVD 56

Query: 298 VKLNKHIWSSGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVE 119
           VKLNK IWS GI              RND+EDAKEE +SLVTVAE+P EGL GLGTKV+E
Sbjct: 57  VKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116

Query: 118 DED 110
           +ED
Sbjct: 117 EED 119

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>RL311_ARATH (Q9STR1) 60S ribosomal protein L31-1|
          Length = 119

 Score =  166 bits (421), Expect = 3e-41
 Identities = 84/123 (68%), Positives = 95/123 (77%)
 Frame = -3

Query: 478 MSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRID 299
           MSEKK     RK+EVVTREYT+NLH+RLH CTFKKKAP AIKEIRKFA+K MGT DVR+D
Sbjct: 1   MSEKKG----RKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVD 56

Query: 298 VKLNKHIWSSGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVE 119
           VKLNK IWS GI              RND+EDAKEE +SLVTVAE+P EGL GLGTK++E
Sbjct: 57  VKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116

Query: 118 DED 110
           +ED
Sbjct: 117 EED 119

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>RL31_PANGI (Q9MAV7) 60S ribosomal protein L31|
          Length = 121

 Score =  166 bits (419), Expect = 5e-41
 Identities = 81/113 (71%), Positives = 92/113 (81%)
 Frame = -3

Query: 448 RKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSS 269
           RK+EVVTREYT+NLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGT DVR+DVKLNK IWS 
Sbjct: 8   RKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSR 67

Query: 268 GIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDED 110
           GI              RND+EDAKEELYSLVTVA++P   LKGLG +++E++D
Sbjct: 68  GIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120

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>RL31_PICMA (O65071) 60S ribosomal protein L31|
          Length = 120

 Score =  164 bits (416), Expect = 1e-40
 Identities = 79/113 (69%), Positives = 91/113 (80%)
 Frame = -3

Query: 448 RKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSS 269
           R++EV TREYT+NLH+RLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +WS 
Sbjct: 8   RRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAVWSR 67

Query: 268 GIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDED 110
           GI              RNDEEDAK+ELYS+VTVAEVP EGL GLGTK++E+ED
Sbjct: 68  GIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKIIEEED 120

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>RL31_CHLRE (P45841) 60S ribosomal protein L31|
          Length = 116

 Score =  124 bits (312), Expect = 1e-28
 Identities = 66/111 (59%), Positives = 77/111 (69%)
 Frame = -3

Query: 448 RKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSS 269
           R  E VTREYT++L KRLH  +FKK AP A+KEIRKFA K MGT+DVR+DVKLNK +WS 
Sbjct: 7   RSKEQVTREYTIHLSKRLHKTSFKKCAPKAVKEIRKFASKVMGTSDVRLDVKLNKAVWSK 66

Query: 268 GIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVED 116
           GI              RND+EDAKEE+YS VTVAE   +  KG GT VV+D
Sbjct: 67  GIKNVPTRLRIVISRRRNDDEDAKEEMYSFVTVAE--DQSTKGKGTVVVQD 115

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>RL31_CYAPA (Q9XGL4) 60S ribosomal protein L31|
          Length = 119

 Score =  123 bits (308), Expect = 4e-28
 Identities = 66/125 (52%), Positives = 82/125 (65%)
 Frame = -3

Query: 487 PSEMSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDV 308
           P   ++K RA      E+VTREYT+NLHKRLHG  FKK+AP A+KEI+KFA K MGT DV
Sbjct: 2   PKAENKKSRAA-----EIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDV 56

Query: 307 RIDVKLNKHIWSSGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTK 128
           R+D +LNK +W+ GI              RND+EDAKE+LY+LVT   VP    KGL T+
Sbjct: 57  RVDPRLNKFVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTY--VPVTSFKGLQTQ 114

Query: 127 VVEDE 113
            V+ E
Sbjct: 115 NVDAE 119

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>RL31_SPOFR (Q7KF90) 60S ribosomal protein L31|
          Length = 124

 Score =  118 bits (295), Expect = 1e-26
 Identities = 61/108 (56%), Positives = 76/108 (70%)
 Frame = -3

Query: 442 DEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           +EVVTREYTVNLHKRLHG  FKK+AP AIKEIRKFA+K MGT DVR+D +LNK +WS G+
Sbjct: 15  NEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGV 74

Query: 262 XXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVE 119
                         RND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 75  RNVPFRVRVRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120

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>RL31_HELVI (Q9GP16) 60S ribosomal protein L31|
          Length = 124

 Score =  118 bits (295), Expect = 1e-26
 Identities = 61/108 (56%), Positives = 76/108 (70%)
 Frame = -3

Query: 442 DEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           +EVVTREYTVNLHKRLHG  FKK+AP AIKEIRKFA+K MGT DVR+D +LNK +WS G+
Sbjct: 15  NEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGV 74

Query: 262 XXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVE 119
                         RND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 75  RNVPFRVRVRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120

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>RL31_PAROL (Q9IA76) 60S ribosomal protein L31|
          Length = 124

 Score =  115 bits (287), Expect = 1e-25
 Identities = 63/124 (50%), Positives = 81/124 (65%)
 Frame = -3

Query: 487 PSEMSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDV 308
           P++  EKK+      +EVVTREYT+N+HKR+HG  FKK+AP AIKEIRKFA K MGT DV
Sbjct: 3   PTKKGEKKKGRSAI-NEVVTREYTINVHKRIHGVGFKKRAPRAIKEIRKFAVKEMGTPDV 61

Query: 307 RIDVKLNKHIWSSGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTK 128
           RID +LNK +WS G+              RN++ED+  +LY+LVT   VP    KGL T 
Sbjct: 62  RIDTRLNKAVWSKGVRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTCKGLQTV 119

Query: 127 VVED 116
            V++
Sbjct: 120 NVDE 123

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>RL31_ICTPU (Q90YT7) 60S ribosomal protein L31|
          Length = 125

 Score =  113 bits (283), Expect = 3e-25
 Identities = 60/124 (48%), Positives = 80/124 (64%)
 Frame = -3

Query: 487 PSEMSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDV 308
           P +   +K+      +EVVTREYT+N+HKR+HG +FKK+AP AIKEIRKFA K MGT DV
Sbjct: 3   PLKKGGEKKKGRSAINEVVTREYTINVHKRIHGISFKKRAPRAIKEIRKFAMKEMGTPDV 62

Query: 307 RIDVKLNKHIWSSGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTK 128
           RID +LNK +W+ G+              RN++ED+  +LY+LVT   VP    KGL T 
Sbjct: 63  RIDTRLNKAVWAKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTYKGLQTV 120

Query: 127 VVED 116
            V++
Sbjct: 121 NVDE 124

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>RL31_RAT (P62902) 60S ribosomal protein L31|
          Length = 125

 Score =  111 bits (278), Expect = 1e-24
 Identities = 59/124 (47%), Positives = 79/124 (63%)
 Frame = -3

Query: 487 PSEMSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDV 308
           P++   +K+      +EVVTREYT+N+HKR+HG  FKK+AP A+KEIRKFA K MGT DV
Sbjct: 3   PAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDV 62

Query: 307 RIDVKLNKHIWSSGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTK 128
           RID +LNK +W+ GI              RN++ED+  +LY+LVT   VP    K L T 
Sbjct: 63  RIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTV 120

Query: 127 VVED 116
            V++
Sbjct: 121 NVDE 124

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>RL31_PIG (P62901) 60S ribosomal protein L31|
          Length = 125

 Score =  111 bits (278), Expect = 1e-24
 Identities = 59/124 (47%), Positives = 79/124 (63%)
 Frame = -3

Query: 487 PSEMSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDV 308
           P++   +K+      +EVVTREYT+N+HKR+HG  FKK+AP A+KEIRKFA K MGT DV
Sbjct: 3   PAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDV 62

Query: 307 RIDVKLNKHIWSSGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTK 128
           RID +LNK +W+ GI              RN++ED+  +LY+LVT   VP    K L T 
Sbjct: 63  RIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTV 120

Query: 127 VVED 116
            V++
Sbjct: 121 NVDE 124

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>RL31_MOUSE (P62900) 60S ribosomal protein L31|
          Length = 125

 Score =  111 bits (278), Expect = 1e-24
 Identities = 59/124 (47%), Positives = 79/124 (63%)
 Frame = -3

Query: 487 PSEMSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDV 308
           P++   +K+      +EVVTREYT+N+HKR+HG  FKK+AP A+KEIRKFA K MGT DV
Sbjct: 3   PAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDV 62

Query: 307 RIDVKLNKHIWSSGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTK 128
           RID +LNK +W+ GI              RN++ED+  +LY+LVT   VP    K L T 
Sbjct: 63  RIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTV 120

Query: 127 VVED 116
            V++
Sbjct: 121 NVDE 124

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>RL31_HUMAN (P62899) 60S ribosomal protein L31|
          Length = 125

 Score =  111 bits (278), Expect = 1e-24
 Identities = 59/124 (47%), Positives = 79/124 (63%)
 Frame = -3

Query: 487 PSEMSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDV 308
           P++   +K+      +EVVTREYT+N+HKR+HG  FKK+AP A+KEIRKFA K MGT DV
Sbjct: 3   PAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDV 62

Query: 307 RIDVKLNKHIWSSGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTK 128
           RID +LNK +W+ GI              RN++ED+  +LY+LVT   VP    K L T 
Sbjct: 63  RIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTV 120

Query: 127 VVED 116
            V++
Sbjct: 121 NVDE 124

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>RL31_XENLA (Q6NUH0) 60S ribosomal protein L31|
          Length = 125

 Score =  110 bits (275), Expect = 2e-24
 Identities = 59/124 (47%), Positives = 79/124 (63%)
 Frame = -3

Query: 487 PSEMSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDV 308
           P++   +K+      +EVVTREYT+N+HKR+HG  FKK+AP A+KEIRKFA K M T DV
Sbjct: 3   PAKKGGEKKKGRSAINEVVTREYTINIHKRIHGIGFKKRAPRALKEIRKFAVKEMRTPDV 62

Query: 307 RIDVKLNKHIWSSGIXXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTK 128
           RID +LNK +W+ GI              RN++ED+  +LY+LVT   VP    KGL T 
Sbjct: 63  RIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTNYKGLQTV 120

Query: 127 VVED 116
            V++
Sbjct: 121 NVDE 124

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>RL31_DROME (Q9V597) 60S ribosomal protein L31|
          Length = 124

 Score =  110 bits (274), Expect = 3e-24
 Identities = 59/111 (53%), Positives = 72/111 (64%)
 Frame = -3

Query: 442 DEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           +EVVTRE T++L KR+H   FKK+AP AIKEIRKFA++ MGT DVRID +LNKHIWS GI
Sbjct: 15  NEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGI 74

Query: 262 XXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDED 110
                         RND+ED+  +LY+ VT   VP    K L T+ VE  D
Sbjct: 75  RSTPFRIRVRLARRRNDDEDSPNKLYTYVTY--VPVSTFKNLQTENVESSD 123

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>RL31_DROVI (O18602) 60S ribosomal protein L31|
          Length = 128

 Score =  108 bits (270), Expect = 9e-24
 Identities = 60/115 (52%), Positives = 73/115 (63%), Gaps = 4/115 (3%)
 Frame = -3

Query: 442 DEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           +EVVTRE T++L KR+H   FKK+AP AIKEIRKF ++ MGTNDVRID +LNKHIWS GI
Sbjct: 15  NEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFTEREMGTNDVRIDTRLNKHIWSKGI 74

Query: 262 XXXXXXX----XXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDED 110
                             RND+ED+  +LY+LVT   VP    K L T+ VE  D
Sbjct: 75  SLRYRSTPFRVRVRLARRRNDDEDSPNKLYTLVTYVPVPT--FKNLQTENVESSD 127

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>RL31_YEAST (P04649) 60S ribosomal protein L31 (L34) (YL28)|
          Length = 112

 Score =  105 bits (261), Expect = 1e-22
 Identities = 56/109 (51%), Positives = 72/109 (66%)
 Frame = -3

Query: 439 EVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGIX 260
           +VVTREYT+NLHKRLHG +FKK+AP A+KEI+KFA+  MGT+DVR+  +LN+ IW  G+ 
Sbjct: 5   DVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVK 64

Query: 259 XXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDE 113
                        RN+EEDAK  L+S V    V     KGL T VVE++
Sbjct: 65  GVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLV--ASAKGLQTVVVEED 111

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>RL31_ASHGO (Q757D7) 60S ribosomal protein L31|
          Length = 114

 Score =  105 bits (261), Expect = 1e-22
 Identities = 56/110 (50%), Positives = 70/110 (63%)
 Frame = -3

Query: 439 EVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGIX 260
           +VVTREYT+NLHKRLHG TFKK+AP A+KEI+KFA+  MGT DVR+D +LN  IW  G+ 
Sbjct: 6   DVVTREYTINLHKRLHGVTFKKRAPRAVKEIKKFAKLHMGTEDVRLDPRLNTEIWKRGVK 65

Query: 259 XXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDED 110
                        RN+E+ A   L+S V    V     KGL T VVE+E+
Sbjct: 66  GVPFRMRLRISRRRNEEDTAPPPLFSYVEPVVV--ASAKGLHTVVVEEEE 113

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>RL31_CANGA (Q6FWF4) 60S ribosomal protein L31|
          Length = 113

 Score =  103 bits (257), Expect = 3e-22
 Identities = 54/109 (49%), Positives = 71/109 (65%)
 Frame = -3

Query: 439 EVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGIX 260
           +VVTREYT+N+HKRLHG +FKK+AP A+KEI+KFA+  MGT DVR+  +LN+ IW  G+ 
Sbjct: 6   DVVTREYTINMHKRLHGVSFKKRAPKAVKEIKKFAKLHMGTEDVRLAPELNQEIWKRGVK 65

Query: 259 XXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDE 113
                        RN+EE+AK  L+S V    V     KGL T VVE++
Sbjct: 66  GVAFRLRLRISRKRNEEENAKNPLFSYVEPVFV--ASAKGLQTTVVEED 112

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>RL31_AEDAE (Q9GN74) 60S ribosomal protein L31|
          Length = 124

 Score =  102 bits (253), Expect = 9e-22
 Identities = 55/111 (49%), Positives = 72/111 (64%)
 Frame = -3

Query: 442 DEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           +EVVTRE T+NL++RLH   +KK+AP A+K +RKFA+K MGTNDVRID +LNK +W  GI
Sbjct: 15  NEVVTRECTINLNRRLHKVGYKKRAPRAVKIVRKFAEKEMGTNDVRIDTRLNKALWHRGI 74

Query: 262 XXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDED 110
                         RND+ED+  +LY+LVT   VP    K L T+ VE  +
Sbjct: 75  RNPPFRIRVRLSRRRNDDEDSPNKLYTLVTY--VPVSTFKELQTENVESTE 123

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>RL31_CAEEL (Q9U332) 60S ribosomal protein L31|
          Length = 122

 Score = 96.3 bits (238), Expect = 5e-20
 Identities = 52/111 (46%), Positives = 69/111 (62%)
 Frame = -3

Query: 442 DEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           +EVVTREYT+++H R+ G   KK+AP AI EI+KFA+  M TNDVR+D KLNK IWS GI
Sbjct: 14  NEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDTKLNKFIWSKGI 73

Query: 262 XXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDED 110
                         RN++ED+ ++LY+L T   VP     GL    V+ E+
Sbjct: 74  KNVPYRVRVRLSRRRNEDEDSAQKLYTLCTY--VPCTNFHGLTNVNVDSEE 122

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>RL31_SCHPO (Q9URX6) 60S ribosomal protein L31|
          Length = 113

 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 48/109 (44%), Positives = 68/109 (62%)
 Frame = -3

Query: 442 DEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           ++VVTR+YT+++HKRL+G +FKK+AP AIKEI  FAQK M T +VR+D  LNK +W  GI
Sbjct: 10  NQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVWKRGI 69

Query: 262 XXXXXXXXXXXXXXRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVED 116
                         R+DE+D  + LY+ V   +V    ++   T VVE+
Sbjct: 70  RNVPHRLRLRLSRKRSDEDD--KALYTYVQAVDVANPKME---TTVVEE 113

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>RL31_METJA (P54009) 50S ribosomal protein L31e|
          Length = 87

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 22/55 (40%), Positives = 34/55 (61%)
 Frame = -3

Query: 427 REYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           R YT+ L   ++     K+AP AIK+I++F ++ M    V+ID +LN+ IW  GI
Sbjct: 9   RIYTIPLRDVINKSVRTKRAPRAIKKIKQFLKRHMKAEIVKIDNELNEKIWERGI 63

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>RL31_METKA (Q8TUY4) 50S ribosomal protein L31e|
          Length = 86

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/55 (40%), Positives = 32/55 (58%)
 Frame = -3

Query: 427 REYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           R YTV L +       KK+AP A+K +R+F ++ M   +VRI   +N+ IW  GI
Sbjct: 8   RVYTVPL-RDAKKAPLKKRAPRAVKALRQFIERHMKAEEVRIGNDVNEKIWERGI 61

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>RL31_METMP (Q6M155) 50S ribosomal protein L31e|
          Length = 83

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = -3

Query: 427 REYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           R YT+ L    +     K+AP AI+ IR+F +K M ++ V++D  +N+ +W   +
Sbjct: 5   RIYTIPLRDVTNKSPTTKRAPRAIRAIREFLKKHMKSDIVKLDNTINEKVWERSL 59

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>RL31_PYRFU (Q8U3S7) 50S ribosomal protein L31e|
          Length = 95

 Score = 37.4 bits (85), Expect = 0.026
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -3

Query: 376 KKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           K+AP A+K +R+F  +     +V ID K+N+ IW  GI
Sbjct: 26  KRAPRAVKFVREFVARHAKAQEVIIDPKVNEKIWERGI 63

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>RL31_METTH (O27649) 50S ribosomal protein L31e|
          Length = 81

 Score = 37.0 bits (84), Expect = 0.034
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -3

Query: 373 KAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           +AP A+K +R+F  K M  + V++D  +N+ +W  GI
Sbjct: 20  RAPKAVKIVREFLMKHMKADTVKLDESINEKLWERGI 56

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>RL31_PYRAB (Q9UYI7) 50S ribosomal protein L31e|
          Length = 94

 Score = 35.8 bits (81), Expect = 0.076
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 376 KKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           K+AP A+K +R+F  +     +V I  K+N+ IW  GI
Sbjct: 26  KRAPRAVKFVREFVARHAKAQEVIISTKVNEKIWERGI 63

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>RL31_PYRHO (P58189) 50S ribosomal protein L31e|
          Length = 95

 Score = 35.4 bits (80), Expect = 0.100
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 376 KKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGI 263
           K+AP A+K +R+F  +     +V I  K+N+ IW  GI
Sbjct: 27  KRAPRAVKFVREFIARHAKAQEVIISTKVNEKIWERGI 64

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>NFM_HUMAN (P07197) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
           (Neurofilament 3)
          Length = 915

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 529 QPPSKPREEQGERRPSEMSEKKRAPGPRKDEVVTREYTVNLHKRLH 392
           + P + + E+ E +P ++ EKK+A  P K+E V    T+    ++H
Sbjct: 710 EAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVH 755

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>RL31_AERPE (Q9YD25) 50S ribosomal protein L31e|
          Length = 105

 Score = 34.3 bits (77), Expect = 0.22
 Identities = 17/50 (34%), Positives = 32/50 (64%)
 Frame = -3

Query: 421 YTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWS 272
           Y VNL +R++     ++A  A++ +R+F ++    ++V ID +LN +IWS
Sbjct: 10  YVVNL-RRVYWGRRTRRAIRAVRMVREFVRRHTKADEVVIDNELNNYIWS 58

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>RL31_ARCFU (O28213) 50S ribosomal protein L31e|
          Length = 88

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 436 VVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTN--DVRIDVKLNKHIWSSG 266
           VV R Y++ L  ++       +A  A K +RKF  + M     +V+ID  +N+ IW  G
Sbjct: 5   VVERVYSIRLRHKMKRYPRWLRAKKAAKYVRKFLSRHMKVEPENVKIDTAVNEKIWERG 63

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>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)|
          Length = 174

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = -2

Query: 500 GRKEAVGDVGEEARPRPSQGRGGDPRVHRQPP------QAPPRMYLQEEGTKCHQGDQEV 339
           GR    G  G+  RP P   +GGD + HR PP      + PP+   Q +G   H G  E 
Sbjct: 106 GRPPQQGGPGKPERPPP---QGGD-QSHRPPPPPGKPERPPPQGGDQSQGPPPHPGKPEG 161

Query: 338 CPEGHGNK 315
            P   GNK
Sbjct: 162 PPPQEGNK 169



 Score = 27.7 bits (60), Expect(2) = 0.82
 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
 Frame = -2

Query: 455 RPSQG----RGGDPRVHRQPPQAPPRMYLQEEGTKCHQGDQEVCPEGHGNK*CPHRR*AQ 288
           RP QG    +G  P    +P + PP+   Q +GT    G  E  P   G    P R   Q
Sbjct: 64  RPPQGGNQSQGPPPHPPGKPEEPPPQGGNQSQGTPPPPGKPEGRPPQQGGPGKPERPPPQ 123

Query: 287 ---QAHLEQRHQECPEESPCQDCPQEE 216
              Q+H        PE  P Q   Q +
Sbjct: 124 GGDQSHRPPPPPGKPERPPPQGGDQSQ 150



 Score = 23.5 bits (49), Expect(2) = 0.82
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 532 PQPPSKPREEQGERRPSEMSEKKRAPGPR 446
           P+PP +P+     +RP     K + P P+
Sbjct: 18  PKPPGRPQGGNQPQRPPPPPGKPQGPPPQ 46

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>RL31_METAC (Q8TIN3) 50S ribosomal protein L31e|
          Length = 89

 Score = 32.3 bits (72), Expect = 0.85
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 442 DEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRI--DVKLNKHIWSS 269
           D V  + YT+ L + +      K+A  A+ E+R F  + M T  V++  D  +N+H+W  
Sbjct: 4   DMVKEQIYTIPL-REVRKVPAWKRANRAVIEVRGFLVRHMKTESVQVKLDKSINEHLWEK 62

Query: 268 G 266
           G
Sbjct: 63  G 63

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>GDF6_BOVIN (P55106) Growth/differentiation factor 6 precursor (GDF-6)|
           (Cartilage-derived morphogenetic protein 2) (CDMP-2)
           (Fragment)
          Length = 436

 Score = 32.3 bits (72), Expect = 0.85
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -3

Query: 529 QPPSKPREEQGERRPSEMSEKKRAPGPRKDEVVTREYTVNLHK 401
           +PP +P+EE  +RRP +  E +  PG R   +V  EY +++++
Sbjct: 38  EPPPRPQEEP-QRRPPQQPEAREPPG-RGPRLVPHEYMLSIYR 78

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>IF2C_PHAVU (P57997) Translation initiation factor IF-2, chloroplast precursor|
           (PvIF2cp)
          Length = 1012

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -3

Query: 532 PQPPSKPR----EEQGERRPSEMSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAP 365
           PQPPSKP+    ++  + +P+ +S+   AP P K  VV R+      K     + K K  
Sbjct: 240 PQPPSKPQPLKPQQPSKPQPALLSKPSIAPPPVKKPVVLRD------KGAAETSVKSKEK 293

Query: 364 NAIKEIRKFAQK 329
            +   I KFA K
Sbjct: 294 KSPILIDKFASK 305

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>LOXL1_HUMAN (Q08397) Lysyl oxidase homolog 1 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 1) (LOL)
          Length = 574

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 524 SIEAERGAGRKEAVGDVGEEARPRPSQGRGGDPRVHRQPPQA--PPRMY 384
           S+ +E   G ++A  D G EA    +Q  GGDPR+   PP A  PP  Y
Sbjct: 277 SLYSEGTPGFEQAYPDPGPEA----AQAHGGDPRLGWYPPYANPPPEAY 321

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>RL31_METMA (Q8PYQ4) 50S ribosomal protein L31e|
          Length = 93

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -3

Query: 454 GPRKDEVVTRE-YTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGT--NDVRIDVKLNK 284
           G   D++V  + YT+ L + +      K+A  A+KE+R F  + M T    V++D  +N+
Sbjct: 3   GKMADDMVKEQIYTIPL-REVRKVPAWKRAGRAVKEVRGFLVRHMKTEAEQVKLDKTINE 61

Query: 283 HIWSSG 266
            +W  G
Sbjct: 62  CLWEKG 67

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>FOXP4_HUMAN (Q8IVH2) Forkhead box protein P4 (Fork head-related protein-like A)|
          Length = 680

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -2

Query: 479 DVGEEARPRPSQGRGGDPRVHRQPPQAPPRMYLQEEGTKCHQGDQEVCPEGHGN 318
           DVG    P PS G    PR+   PPQ   ++ ++EE  +  +  Q   P G  N
Sbjct: 607 DVGAPVEPLPSNGSSSPPRL--SPPQYSHQVQVKEEPAEAEEDRQPGPPLGAPN 658

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>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 532  PQPPSKPREEQGERRPSEMSEKKRAPGPR 446
            P+P ++ ++ +G+R P   S K+RAPG R
Sbjct: 2118 PRPGARGQDAEGKRAPLVFSGKRRAPGAR 2146

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>EMS_DROME (P18488) Homeotic protein empty spiracles|
          Length = 497

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -2

Query: 452 PSQGRGGDPRVHRQPPQAPPRMYLQEEGTKCHQGDQEVCPEGHG-NK*CPHRR*AQQAHL 276
           P     G+  V   PPQ PP       G+  H     + P  HG     PH +  QQ HL
Sbjct: 50  PQSPPPGERNVPGSPPQTPPATLTLIPGSPPH---HLMAPPAHGLPYPHPHAQQQQQQHL 106

Query: 275 EQRHQECPEESPCQ 234
           +  H   P  SP Q
Sbjct: 107 QAPHPH-PHLSPAQ 119

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>YBOX1_RAT (P62961) Nuclease sensitive element-binding protein 1|
           (Y-box-binding protein 1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)
          Length = 321

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
 Frame = -2

Query: 473 GEEARP-RPSQGRGGDPRVHRQPP-QAPPRMYLQEEGTKCHQGDQEVCPEGHGNK*CPHR 300
           GE+ RP R +  RG  PR  R PP Q  PR    EE  K +QGD     E  G +  P R
Sbjct: 224 GEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEE-DKENQGD-----ETQGQQ-PPQR 276

Query: 299 R*AQQAHLEQRHQECP-----EESPCQDCPQE 219
           R  +  +  +R  E P     +E+   D P E
Sbjct: 277 RYRRNFNYRRRRPENPKPQDGKETKAADPPAE 308

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>YBOX1_MOUSE (P62960) Nuclease sensitive element-binding protein 1|
           (Y-box-binding protein 1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)
          Length = 321

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
 Frame = -2

Query: 473 GEEARP-RPSQGRGGDPRVHRQPP-QAPPRMYLQEEGTKCHQGDQEVCPEGHGNK*CPHR 300
           GE+ RP R +  RG  PR  R PP Q  PR    EE  K +QGD     E  G +  P R
Sbjct: 224 GEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEE-DKENQGD-----ETQGQQ-PPQR 276

Query: 299 R*AQQAHLEQRHQECP-----EESPCQDCPQE 219
           R  +  +  +R  E P     +E+   D P E
Sbjct: 277 RYRRNFNYRRRRPENPKPQDGKETKAADPPAE 308

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>YBOX1_HUMAN (P67809) Nuclease sensitive element-binding protein 1|
           (Y-box-binding protein 1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)
          Length = 323

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
 Frame = -2

Query: 473 GEEARP-RPSQGRGGDPRVHRQPP-QAPPRMYLQEEGTKCHQGDQEVCPEGHGNK*CPHR 300
           GE+ RP R +  RG  PR  R PP Q  PR    EE  K +QGD     E  G +  P R
Sbjct: 226 GEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEE-DKENQGD-----ETQGQQ-PPQR 278

Query: 299 R*AQQAHLEQRHQECP-----EESPCQDCPQE 219
           R  +  +  +R  E P     +E+   D P E
Sbjct: 279 RYRRNFNYRRRRPENPKPQDGKETKAADPPAE 310

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>YBOX1_BOVIN (P67808) Nuclease sensitive element-binding protein 1|
           (Y-box-binding protein 1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)
          Length = 323

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
 Frame = -2

Query: 473 GEEARP-RPSQGRGGDPRVHRQPP-QAPPRMYLQEEGTKCHQGDQEVCPEGHGNK*CPHR 300
           GE+ RP R +  RG  PR  R PP Q  PR    EE  K +QGD     E  G +  P R
Sbjct: 226 GEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEE-DKENQGD-----ETQGQQ-PPQR 278

Query: 299 R*AQQAHLEQRHQECP-----EESPCQDCPQE 219
           R  +  +  +R  E P     +E+   D P E
Sbjct: 279 RYRRNFNYRRRRPENPKPQDGKETKAADPPAE 310

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>PMS2_MOUSE (P54279) PMS1 protein homolog 2 (DNA mismatch repair protein PMS2)|
          Length = 859

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 523 PSKPREEQGERRPSEMSEKKRAPGPRKDEVVTREYTVNLHKRL 395
           P+  +  + E RPS ++  +R PGP+       +  + ++KR+
Sbjct: 570 PTNAKRFKTEERPSNVNISQRLPGPQSTSAAEVDVAIKMNKRI 612

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>ZN592_MOUSE (Q8BHZ4) Zinc finger protein 592 (Zfp-592)|
          Length = 1262

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -2

Query: 443  GRGGDPRVHRQPPQAPPRMYLQEEGTKCHQGDQEVCPEGHGNK*CPHRR*AQQAHLEQRH 264
            GR G P  HR+  +A PRM  +  G  C Q  QE  P+          R +  +H+++ H
Sbjct: 961  GRWGRPEAHRRA-EARPRM--RSTGWTC-QECQEWVPD----------RESYVSHMKKSH 1006

Query: 263  QECPEESPCQDCPQ 222
                +  PC+ C Q
Sbjct: 1007 GRTLKRYPCRQCEQ 1020

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>MKL2_MOUSE (P59759) MKL/myocardin-like protein 2 (Myocardin-related|
           transcription factor B) (MRTF-B)
          Length = 1080

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 430 SPPRPC--EGRGRASSPTSPTASFRPAPLSASMEA 528
           SP +P   E +G A+SP+ P  S  P P++AS  A
Sbjct: 185 SPDQPASQESQGSAASPSEPKVSASPPPVTASTPA 219

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>KCNN3_RAT (P70605) Small conductance calcium-activated potassium channel|
           protein 3 (SK3)
          Length = 732

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = -2

Query: 485 VGDVGEEAR-PRPSQGRGGDPRVHRQPPQAPPRMYLQEEGTKCHQGDQEVCPEGHGNK*C 309
           VGD+ E+ + P PS G     +    PP APP +  Q  G        ++          
Sbjct: 12  VGDLDEDPKCPCPSSGDEQQQQQQPPPPSAPPAVPQQPPGPLLQPQPPQL---------- 61

Query: 308 PHRR*AQQAHLEQRHQECPEESPCQDCPQ 222
             ++  QQ   +Q+ Q+  +++P    PQ
Sbjct: 62  --QQQQQQQQQQQQQQQQQQQAPLHPLPQ 88

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>GSLG1_MOUSE (Q61543) Golgi apparatus protein 1 precursor (Golgi|
           sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1)
           (Selel)
          Length = 1175

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -2

Query: 527 ASIEAERGAGRKEAVGDVGEEARPRPSQGRGGDPRVHRQPPQAPPRMYLQEEGTKCHQGD 348
           A+  A+ G G+ +  G       P P QG GG P   +QPPQ P     Q++     Q  
Sbjct: 23  AAAGAQNGHGQGQGPGT---NFGPFPGQGGGGSP-AGQQPPQQPQLSQQQQQPPPQQQQQ 78

Query: 347 QE 342
           Q+
Sbjct: 79  QQ 80

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>YPRR_ECOLI (P03848) Hypothetical protein repA4|
          Length = 128

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 529 QPPSKPRE--EQGERRPSEMSEKKRAPGPRKDEVVTREY 419
           QPP KPR   E   + PS ++EK+  PGP+    V   Y
Sbjct: 22  QPPEKPRSSAELKPQSPSLITEKRPRPGPKGRNRVAFNY 60

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>YBOX1_CHICK (Q06066) Nuclease sensitive element-binding protein 1 (Y-box|
           binding protein 1) (Y-box transcription factor)
          Length = 321

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -2

Query: 473 GEEARP-RPSQGRGGDPRVHRQPP-QAPPRMYLQEEGTKCHQGDQEVCPEGHGNK*CPHR 300
           GE+ RP R +  RG  PR  R PP Q  PR    EE  K +QGD     E  G +  P R
Sbjct: 224 GEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEE-DKENQGD-----ETQGQQ-PPQR 276

Query: 299 R*AQQAHLEQRHQECPE 249
           R  +  +  +R  E P+
Sbjct: 277 RYRRNFNYRRRRPENPK 293

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>MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
           (Protein kinase C substrate, 80 kDa protein, light
           chain) (PKCSL) (80K-L protein)
          Length = 331

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 1/125 (0%)
 Frame = -2

Query: 530 AASIEAERGAGRKEAVGDVGEEARPRPSQGRGGDPRVHR-QPPQAPPRMYLQEEGTKCHQ 354
           AA+  AE GA   E     GEEA        GGDP+  + Q     P      + TK  +
Sbjct: 199 AAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQEAAVAPEKPPASDETKAAE 258

Query: 353 GDQEVCPEGHGNK*CPHRR*AQQAHLEQRHQECPEESPCQDCPQEEXXXXXXXGAVLSGD 174
              +V             + A++A       E P  +     P++E        A  +  
Sbjct: 259 EPSKV-----------EEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEEPAAAAASS 307

Query: 173 SC*SP 159
           +C +P
Sbjct: 308 ACAAP 312

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>PTH_SILPO (Q5LV91) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 239

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 430 SPPRPCEGRGRASSPTSPTASFRPAPLSASMEAAA 534
           +PPRP  G GR  + T   A   PAP ++   A A
Sbjct: 188 APPRPSTGTGRPPAKTPARAEEPPAPAASPAPATA 222

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>PRB4L_HUMAN (P10162) Basic salivary proline-rich protein 4 allele L (Salivary|
           proline-rich protein Po) (Parotid o protein) [Contains:
           Peptide P-D] (Fragment)
          Length = 276

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = -2

Query: 473 GEEARPRPSQGRGGDPRVHRQPP------QAPPRMYLQEEGTKCHQGDQEVCPEGHGNK 315
           G+  RP P  G     + HR PP      + PP+   Q +G   H G  E  P   GNK
Sbjct: 147 GKPERPPPQGGN----QSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNK 201

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>PRPH_MESAU (P06680) Acidic proline-rich protein HP43A precursor|
          Length = 183

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = -2

Query: 473 GEEARPRPSQ--GRGGDPRVHRQPPQAPPRMYLQEEGTKCHQGDQEVCPEGHGNK*CPHR 300
           G+  +PRP +   + G P+   Q    PP+   QE G    +G Q+  P   GN+  P +
Sbjct: 75  GDHQKPRPPKPGNQQGPPQQEGQQQNRPPKPGNQE-GPPQQEGQQQNRPPKPGNQEGPPQ 133

Query: 299 R*AQQAHLEQR--HQECPEESPCQ 234
           +  QQ +   +  +QE P +   Q
Sbjct: 134 QEGQQQNRPPKPGNQEGPPQQEGQ 157

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>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor|
           (Salivary proline-rich protein Po) (Parotid o protein)
           [Contains: Protein N1; Glycosylated protein A]
          Length = 247

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = -2

Query: 473 GEEARPRPSQGRGGDPRVHRQPP------QAPPRMYLQEEGTKCHQGDQEVCPEGHGNK 315
           G+  RP P  G     + HR PP      + PP+   Q +G   H G  E  P   GNK
Sbjct: 118 GKPERPPPQGGN----QSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNK 172

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>CORO_SCHPO (O13923) Coronin-like protein crn1|
          Length = 601

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -3

Query: 529 QPPSKPREEQGERRPSEMSE-KKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIK 353
           QP SKP+E   E++PS+  E K   P   K E  +++   + H++    T  K+    ++
Sbjct: 433 QPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVE 492

Query: 352 EIRKFAQKAMGTNDVRIDVK 293
             + F + A        DVK
Sbjct: 493 --KSFPKPASSPVTFSEDVK 510

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>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (hDomino)
            (CAG repeat protein 32) (Trinucleotide repeat-containing
            gene 12 protein)
          Length = 3160

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -2

Query: 527  ASIEAERGAGRKEAVGDVGEEARPRPSQGRGGDPRVHRQPPQAPPRM-YLQEEGTKCHQG 351
            AS+ AER A  K+A+ D  +  +P  +Q     P+    P Q PP +   Q  G++   G
Sbjct: 2515 ASLRAERIAKEKKALADQQKAQQPAVAQPPPPQPQPPPPPQQPPPPLPQPQAAGSQPPAG 2574

Query: 350  DQEVCPE 330
               V P+
Sbjct: 2575 PPAVQPQ 2581

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>APBA1_RAT (O35430) Amyloid beta A4 precursor protein-binding family A member|
           1 (Neuron-specific X11 protein) (Neuronal
           Munc18-1-interacting protein 1) (Mint-1) (Adapter
           protein X11alpha)
          Length = 839

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 479 DVGEEARPRPSQGRGGDP---RVHRQPPQAPPRMYLQEEGTKC 360
           +V EE +P P    G  P   R H  PP  PP    +EE  +C
Sbjct: 33  EVEEEQQPSPPPPAGHAPEDHRAHPAPPPPPPPQEEEEERGEC 75

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>PRB4M_HUMAN (P10161) Basic salivary proline-rich protein 4 allele M (Salivary|
           proline-rich protein Po) (Parotid o protein) [Contains:
           Peptide P-D] (Fragment)
          Length = 238

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = -2

Query: 473 GEEARPRPSQGRGGDPRVHRQPP------QAPPRMYLQEEGTKCHQGDQEVCPEGHGNK 315
           G+  RP P  G     + HR PP      + PP+   Q +G   H G  E  P   GNK
Sbjct: 109 GKPERPPPQGGN----QSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNK 163

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>ZN592_HUMAN (Q92610) Zinc finger protein 592|
          Length = 1267

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -2

Query: 443  GRGGDPRVHRQPPQAPPRMYLQEEGTKCHQGDQEVCPEGHGNK*CPHRR*AQQAHLEQRH 264
            GR G P  HR+  +A PR  L+  G  C Q  QE  P+          R +  +H+++ H
Sbjct: 961  GRWGRPEAHRRV-EARPR--LRNTGWTC-QECQEWVPD----------RESYVSHMKKSH 1006

Query: 263  QECPEESPCQDCPQ 222
                +  PC+ C Q
Sbjct: 1007 GRTLKRYPCRQCEQ 1020

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>RS3_AMBME (P79891) 40S ribosomal protein S3|
          Length = 253

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -2

Query: 449 SQGRGG--DPRVHRQPPQAPPRM 387
           S+ +GG  DP+V +QPPQ PP M
Sbjct: 224 SEQKGGKPDPQVPQQPPQQPPAM 246

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>PKHA4_RAT (P60669) Pleckstrin homology domain-containing family A member 4|
           (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1)
          Length = 779

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 23/66 (34%), Positives = 27/66 (40%)
 Frame = -2

Query: 518 EAERGAGRKEAVGDVGEEARPRPSQGRGGDPRVHRQPPQAPPRMYLQEEGTKCHQGDQEV 339
           +A R  G  E  G     ARPRP +G GG        P  PP +  +EEG        EV
Sbjct: 150 KASRAEG--EDCGLPRSPARPRPGEGPGG--------PGGPPEVNRREEGRTSE--SPEV 197

Query: 338 CPEGHG 321
            P   G
Sbjct: 198 APLSRG 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,331,001
Number of Sequences: 219361
Number of extensions: 1327951
Number of successful extensions: 5838
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 5096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5798
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result