ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37p21 |
|---|---|
| Clone Library Name | barley_pub |
>DHB4_RAT (P97852) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5-b Length = 734 Score = 57.0 bits (136), Expect = 2e-08 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 2/60 (3%) Frame = -3 Query: 461 VDLKKGA--VSTGKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQK 288 +DLK G+ V G +G+ D + T +D+DF+ + GKLNPQ AF G+LK +G+I +QK Sbjct: 664 IDLKNGSGEVYQGPAKGSADTTITISDEDFMEVVLGKLNPQNAFFSGRLKARGNIMLSQK 723
>DHB4_MOUSE (P51660) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5 Length = 734 Score = 53.1 bits (126), Expect = 3e-07 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%) Frame = -3 Query: 461 VDLKKGA--VSTGKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQK 288 +DLK G+ V G +G+ D + +D+DF+ + GKL+PQ AF G+LK +G+I +QK Sbjct: 664 IDLKSGSGEVYQGPAKGSADVTIIISDEDFMEVVFGKLDPQKAFFSGRLKARGNIMLSQK 723
>DHB4_HUMAN (P51659) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5 Length = 735 Score = 52.8 bits (125), Expect = 4e-07 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 2/60 (3%) Frame = -3 Query: 461 VDLKKGA--VSTGKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQK 288 +DLK G+ V G +G D + +D+DF+ + GKL+PQ AF G+LK +G+I +QK Sbjct: 665 IDLKSGSGKVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQK 724
>NLTP_HUMAN (P22307) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) Length = 547 Score = 52.4 bits (124), Expect = 6e-07 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Frame = -3 Query: 461 VDLKKGAVST-GKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQK 288 VD+K G S + D + T D DFLA+ +GK+NPQ AF +GKLKI G++ A K Sbjct: 476 VDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMK 534
>NLT1_CAEEL (Q23655) Nonspecific lipid-transfer protein-like| Length = 118 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = -3 Query: 461 VDLKKGAVSTGKYEGTP-DASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQKF 285 +D K G P + D DF+AIA+GK+ P AF++GK+K+KG+I+ A K Sbjct: 46 IDAKSDTPYVGDDSSRPVEIEINIKDSDFIAIAAGKMKPDQAFMQGKMKLKGNIAKAMKL 105 Query: 284 TPDIFPKPAK 255 + PK K Sbjct: 106 RTILDPKMLK 115
>NLTP_CHICK (Q07598) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) (Fragment) Length = 547 Score = 51.2 bits (121), Expect = 1e-06 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Frame = -3 Query: 461 VDLKKGAVSTG-KYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQKF 285 VD+K G S + D + T D D LA+ +GK+NPQ AF +GKLKI G++ A K Sbjct: 476 VDVKNGKGSVAVNSDKKADCTITMADTDLLALMTGKMNPQTAFFQGKLKISGNMGMAMKL 535 Query: 284 -TPDIFPKPAKL 252 + P AKL Sbjct: 536 QNLQLQPGKAKL 547
>NLTP_BOVIN (P07857) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) Length = 543 Score = 50.8 bits (120), Expect = 2e-06 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Frame = -3 Query: 461 VDLKKGAVST-GKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQKF 285 VD+K G S + D + T D D LA+ +GK+NPQ AF +GKLKI G++ A K Sbjct: 472 VDVKNGKGSVLPNSDKKADCTITMADSDLLALMTGKMNPQTAFFQGKLKINGNMGLAMKL 531 Query: 284 -TPDIFPKPAKL 252 + P AKL Sbjct: 532 QNLQLQPGKAKL 543
>NLTP_RAT (P11915) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) Length = 547 Score = 50.8 bits (120), Expect = 2e-06 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Frame = -3 Query: 461 VDLKKGAVST-GKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQKF 285 VD+K G S + D + T D D LA+ +GK+NPQ AF +GKLKI G++ A K Sbjct: 476 VDVKNGKGSVLPDSDKKADCTITMADSDLLALMTGKMNPQSAFFQGKLKIAGNMGLAMKL 535 Query: 284 -TPDIFPKPAKL 252 + + P AKL Sbjct: 536 QSLQLQPDKAKL 547
>NLTP_RABIT (O62742) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) Length = 547 Score = 50.4 bits (119), Expect = 2e-06 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Frame = -3 Query: 461 VDLKKGAVST-GKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQKF 285 VD+K G S + D + T D D LA+ +GK+NPQ AF +GKLKI G++ A K Sbjct: 476 VDVKNGKGSVLPNSDKKADCTITIADSDLLALMTGKMNPQSAFFQGKLKITGNMGLAMKL 535 Query: 284 -TPDIFPKPAKL 252 + P AKL Sbjct: 536 QNLQLQPGKAKL 547
>NLTP_MOUSE (P32020) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) Length = 547 Score = 50.4 bits (119), Expect = 2e-06 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Frame = -3 Query: 461 VDLKKGAVST-GKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQKF 285 VD+K G S + D + T D D LA+ +GK+NPQ AF +GKLKI G++ A K Sbjct: 476 VDVKNGKGSVLPNSDKKADCTITMADSDLLALMTGKMNPQSAFFQGKLKIAGNMGLAMKL 535 Query: 284 -TPDIFPKPAKL 252 + P AKL Sbjct: 536 QNLQLQPGKAKL 547
>CT079_MOUSE (Q9DAH1) Protein C20orf79 homolog| Length = 156 Score = 45.4 bits (106), Expect = 7e-05 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = -3 Query: 461 VDLKKGA--VSTGKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQK 288 +DLK GA + G D F D F + GK+NPQ AF+ GK K++G + +QK Sbjct: 86 IDLKNGAGDMYLGSARLPADTVFIIPDSVFTELVVGKINPQKAFLAGKFKVRGKVLLSQK 145 Query: 287 FTPDIFPKPAKL 252 IF + AK+ Sbjct: 146 L-ERIFREWAKI 156
>SCP2_YARLI (P80547) Fatty acid-binding protein| Length = 129 Score = 42.4 bits (98), Expect = 6e-04 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Frame = -3 Query: 461 VDLKK-GAVSTGKY--EGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAA 294 +DLK G V G +G D T +DD F + GK N Q F+ GKLK+KG++ A Sbjct: 57 LDLKNDGDVGKGNKSPKGDADIQLTLSDDHFQQLVEGKANAQRLFMTGKLKVKGNVMKA 115
>CT079_HUMAN (Q9UJQ7) Protein C20orf79| Length = 156 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = -3 Query: 461 VDLKKGA--VSTGKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQK 288 +DLK G+ + G D FT + F+ + GK+NPQ AF+ GK K+ G + + K Sbjct: 86 IDLKNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFKVSGKVLLSWK 145
>STML1_MOUSE (Q8CI66) Stomatin-like protein 1 (SLP-1)| Length = 399 Score = 40.0 bits (92), Expect = 0.003 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = -3 Query: 449 KGAVSTGKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQK 288 +G V G+ +G PD + D A+ S +L P A++ G+LK+KG ++ K Sbjct: 337 QGRVGHGEPDGIPDVVVEMAEADLQALLSKELRPLGAYMSGRLKVKGDLAVVMK 390
>POX18_CANMA (Q00680) Oleate-induced peroxisomal protein POX18 (Lipid-transfer| protein) (PXP-18) Length = 126 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = -3 Query: 461 VDLKKGAVSTGKYEGTP---DASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAA 294 +DLKK A + K +G D D DF+ +A+ K+N Q F+ GKLK+KG++ A Sbjct: 53 LDLKK-AGTLAKVDGAAPKGDVQLILKDVDFVKLANNKVNGQKLFMNGKLKVKGNMMKA 110
>POX18_CANTR (P22009) Oleate-induced peroxisomal protein POX18 (Lipid-transfer| protein) (PXP-18) Length = 126 Score = 38.9 bits (89), Expect = 0.006 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Frame = -3 Query: 461 VDLKKGAVSTGKYEGTP---DASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAA 294 +DLKK + K +G D D DF+ +A+ K+N Q F+ GKLK+KG++ A Sbjct: 53 LDLKKDG-TLAKVDGAAPKGDVQLILKDVDFVKLANNKVNGQKLFMNGKLKVKGNMMKA 110
>STML1_HUMAN (Q9UBI4) Stomatin-like protein 1 (SLP-1) (Stomatin-related protein)| (STORP) (EPB72-like 1) (UNC24 homolog) Length = 398 Score = 38.5 bits (88), Expect = 0.008 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = -3 Query: 449 KGAVSTGKYEGTPDASFTFTDDDFLAIASGKLNPQMAFIRGKLKIKGSISAAQK 288 +G V G +G PD + D A+ +L P A++ G+LK+KG ++ A K Sbjct: 336 RGRVGHGVPDGIPDVVVEMAEADLRALLCRELRPLGAYMSGRLKVKGDLAMAMK 389
>GLGB_VIBCH (Q9KNE8) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 666 Score = 30.0 bits (66), Expect = 3.0 Identities = 21/51 (41%), Positives = 27/51 (52%) Frame = +3 Query: 150 PLWSHQIAITNITRLFY*PITRAGQGKAWQSGLLQLGRLGEDVRRELLRRA 302 P SH +A + T LF+ P R G + W S + LGR E VRR L+ A Sbjct: 282 PSDSHGLANFDGTPLFHDPDPRRGWHQDWNSYIYDLGR--EHVRRFLVANA 330
>NUKC_PEA (O98679) NAD(P)H-quinone oxidoreductase chain K, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain K) (NADH-plastoquinone oxidoreductase subunit K) Length = 227 Score = 29.6 bits (65), Expect = 3.9 Identities = 17/64 (26%), Positives = 33/64 (51%) Frame = +2 Query: 62 ALIKALNQSVHKKLQRALQSDKLCYQQQSPPLVTPNCHHEHN*TLLLTDHQGRARQGMAI 241 A+I A+ + + KK+ R + D + YQ+++ T H + + H G + QG+ Sbjct: 145 AVIDAITK-LRKKISREIDEDPISYQRENRSFTT-----NHKFDVGRSTHTGNSNQGLFY 198 Query: 242 RPST 253 +PS+ Sbjct: 199 QPSS 202
>REV_HV1Z6 (P04619) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 29.3 bits (64), Expect = 5.1 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +3 Query: 213 RAGQGKAWQSGLLQLGRLGEDVRRELLRRADAPLDLQLTPYKR 341 R + + W++ Q+ +GE + L R++ P+ LQL P +R Sbjct: 38 RRNRRRRWRARQRQIHSIGERILSTYLGRSEEPVPLQLPPLER 80
>REV_HV1Z2 (P12483) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 118 Score = 29.3 bits (64), Expect = 5.1 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +3 Query: 213 RAGQGKAWQSGLLQLGRLGEDVRRELLRRADAPLDLQLTPYKR 341 R + + W++ Q+ +GE + L R++ P+ LQL P +R Sbjct: 38 RRNRRRRWRARQRQIHSIGERILSTYLGRSEEPVPLQLPPLER 80
>REV_HV1MA (P04622) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 117 Score = 29.3 bits (64), Expect = 5.1 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +3 Query: 213 RAGQGKAWQSGLLQLGRLGEDVRRELLRRADAPLDLQLTPYKR 341 R + + W++ Q+ +GE + L R + P+ LQL P +R Sbjct: 39 RRNRRRRWRARQRQINSIGERILSTYLGRPEEPVPLQLPPLER 81
>GLGB_VIBVY (Q7MG90) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 715 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/51 (39%), Positives = 26/51 (50%) Frame = +3 Query: 150 PLWSHQIAITNITRLFY*PITRAGQGKAWQSGLLQLGRLGEDVRRELLRRA 302 P H +A + T LF+ P R G + W S + LGR E VRR L+ A Sbjct: 333 PSDDHGLANFDGTPLFHDPDPRRGWHQDWNSFIYDLGR--EQVRRFLVSNA 381
>GLGB_VIBVU (Q8D4P0) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 715 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/51 (39%), Positives = 26/51 (50%) Frame = +3 Query: 150 PLWSHQIAITNITRLFY*PITRAGQGKAWQSGLLQLGRLGEDVRRELLRRA 302 P H +A + T LF+ P R G + W S + LGR E VRR L+ A Sbjct: 333 PSDDHGLANFDGTPLFHDPDPRRGWHQDWNSFIYDLGR--EQVRRFLVSNA 381
>GLGB_VIBPA (Q87FR0) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 755 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/51 (39%), Positives = 26/51 (50%) Frame = +3 Query: 150 PLWSHQIAITNITRLFY*PITRAGQGKAWQSGLLQLGRLGEDVRRELLRRA 302 P H +A + T LF+ P R G + W S + LGR E VRR L+ A Sbjct: 372 PSDDHGLANFDGTPLFHDPDPRRGWHQDWNSYIYDLGR--EHVRRFLVSNA 420 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,234,024 Number of Sequences: 219361 Number of extensions: 1115047 Number of successful extensions: 3147 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3146 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
