ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37p19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FREM3_MOUSE (Q5H8B9) FRAS1-related extracellular matrix protein ... 30 6.0
2EXO5_BPT5 (P06229) Exodeoxyribonuclease (EC 3.1.11.3) (5'exonucl... 30 6.0

>FREM3_MOUSE (Q5H8B9) FRAS1-related extracellular matrix protein 3 precursor (NV|
            domain-containing protein 2)
          Length = 2123

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 1    LFSLRKTPK-GHLTTDNXPGKQPASTVERQLEAEQ-PVKKKSRMKIILVFFFLRPIAAHQ 174
            L+S+ + P  GHL + + PG+  AS  + QL   +      S  KI L  F LR    H 
Sbjct: 1450 LYSITRAPSTGHLESSDQPGEPMASFTQLQLARNKISYVHISNDKIKLDHFELRVTGGHH 1509

Query: 175  SEN 183
            SE+
Sbjct: 1510 SES 1512



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>EXO5_BPT5 (P06229) Exodeoxyribonuclease (EC 3.1.11.3) (5'exonuclease)|
          Length = 290

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = -3

Query: 586 IQDIEEXVSIEV------EGCKGMGGMGQERDIHMIKEXDSQAIIIDXKDGSPGPRSRMV 425
           + D+E+ +S++       +  +G+ G+G +R  ++I+E  +   ++D  D  P P  +  
Sbjct: 185 VDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGN---VLDIIDQLPLPGKQKY 241

Query: 424 VQDXGADNE 398
           +Q+  A  E
Sbjct: 242 IQNLNASEE 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,497,856
Number of Sequences: 219361
Number of extensions: 1553270
Number of successful extensions: 3562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3561
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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