| Clone Name | rbags37p19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC016343.5| Homo sapiens chromosome 15, clone RP11-142M4, complete sequence Length = 177386 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 262 aaagaaatcagtagaaaacttctg 285 |||||||||||||||||||||||| Sbjct: 37509 aaagaaatcagtagaaaacttctg 37532
>gb|AC051643.5| Homo sapiens chromosome 15, clone RP11-615L8, complete sequence Length = 158682 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 262 aaagaaatcagtagaaaacttctg 285 |||||||||||||||||||||||| Sbjct: 142529 aaagaaatcagtagaaaacttctg 142552
>dbj|AP005232.3| Homo sapiens genomic DNA, chromosome 11 clone:CMF9-383L23, complete sequence Length = 37909 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 tggggccagggctgccatcttt 460 |||||||||||||||||||||| Sbjct: 11035 tggggccagggctgccatcttt 11056
>dbj|AP005379.2| Homo sapiens genomic DNA, chromosome 11 clone:CMF9-47A13, complete sequence Length = 40327 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 tggggccagggctgccatcttt 460 |||||||||||||||||||||| Sbjct: 27278 tggggccagggctgccatcttt 27299
>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence Length = 125021 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 ccaccaaagtgaaaatcacac 188 ||||||||||||||||||||| Sbjct: 72646 ccaccaaagtgaaaatcacac 72666
>emb|AL606475.7| Human DNA sequence from clone RP13-168N19 on chromosome X, complete sequence Length = 83585 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 576 atatcctgaattgttgttctg 596 ||||||||||||||||||||| Sbjct: 74894 atatcctgaattgttgttctg 74874
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project) Length = 90020 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 ccaccaaagtgaaaatcacac 188 ||||||||||||||||||||| Sbjct: 49042 ccaccaaagtgaaaatcacac 49022
>emb|BX823299.1|CNS0A7DB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS20ZE03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1797 Score = 42.1 bits (21), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 484 aatcttnttccttgatcatatgga 507 |||||| ||||||||||||||||| Sbjct: 1724 aatctttttccttgatcatatgga 1747
>gb|AC091021.8| Homo sapiens chromosome 18, clone RP11-786F14, complete sequence Length = 196622 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 aaagaaatcagtagaaaactt 282 ||||||||||||||||||||| Sbjct: 136463 aaagaaatcagtagaaaactt 136483
>gb|AC021302.11| Homo sapiens chromosome 18, clone RP11-203G13, complete sequence Length = 168535 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 aaagaaatcagtagaaaactt 282 ||||||||||||||||||||| Sbjct: 52522 aaagaaatcagtagaaaactt 52542
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 attccgcccattcctttgca 544 |||||||||||||||||||| Sbjct: 2832383 attccgcccattcctttgca 2832402
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 tgccccattccgcccattcc 538 |||||||||||||||||||| Sbjct: 86895 tgccccattccgcccattcc 86876
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 attccgcccattcctttgca 544 |||||||||||||||||||| Sbjct: 2833244 attccgcccattcctttgca 2833263
>gb|AY724476.1| Rattus norvegicus clone UI-R-FJ0-cpu-i-10-0-UI unknown mRNA Length = 3518 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 tcctggggccagggctgccatctt 459 ||||||||| |||||||||||||| Sbjct: 2044 tcctggggcaagggctgccatctt 2021
>gb|AC134586.4| Mus musculus BAC clone RP23-304K3 from chromosome 9, complete sequence Length = 166474 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 584 aattgttgttctgtctcatg 603 |||||||||||||||||||| Sbjct: 15680 aattgttgttctgtctcatg 15699
>gb|AC161056.5| Mus musculus BAC clone RP23-241J7 from chromosome 3, complete sequence Length = 226878 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 acagccagccagtacagtag 79 |||||||||||||||||||| Sbjct: 195786 acagccagccagtacagtag 195805
>ref|XR_003254.1| PREDICTED: Mus musculus similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (LOC436243), mRNA Length = 1023 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 catcaagaagttgacaacgaataa 216 ||||||||||||||| |||||||| Sbjct: 102 catcaagaagttgaccacgaataa 79
>gb|AC130969.4| Rattus norvegicus 2 BAC CH230-105B13 (Children's Hospital Oakland Research Institute) complete sequence Length = 238254 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 tcctggggccagggctgccatctt 459 ||||||||| |||||||||||||| Sbjct: 16933 tcctggggcaagggctgccatctt 16910
>gb|AC117098.6| Rattus norvegicus 2 BAC CH230-271M7 (Children's Hospital Oakland Research Institute) complete sequence Length = 174234 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 tcctggggccagggctgccatctt 459 ||||||||| |||||||||||||| Sbjct: 118747 tcctggggcaagggctgccatctt 118724
>gb|AC146216.3| Pan troglodytes BAC clone RP43-26N18 from 7, complete sequence Length = 159257 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 aaagaaatcagtagaaaact 281 |||||||||||||||||||| Sbjct: 20164 aaagaaatcagtagaaaact 20183
>gb|AC125357.4| Mus musculus BAC clone RP23-235J18 from chromosome 9, complete sequence Length = 217511 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 584 aattgttgttctgtctcatg 603 |||||||||||||||||||| Sbjct: 172775 aattgttgttctgtctcatg 172794
>ref|XM_570735.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNE00360) partial mRNA Length = 2223 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 tgccccattccgcccattcc 538 |||||||||||||||||||| Sbjct: 1238 tgccccattccgcccattcc 1219
>emb|Z81505.2|CEF16A11 Caenorhabditis elegans Cosmid F16A11, complete sequence Length = 30626 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 tcttcttcttcctccgaccg 159 |||||||||||||||||||| Sbjct: 8392 tcttcttcttcctccgaccg 8411
>gb|AC146280.3| Pan troglodytes BAC clone RP43-29P21 from 7, complete sequence Length = 173940 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 aaagaaatcagtagaaaact 281 |||||||||||||||||||| Sbjct: 22802 aaagaaatcagtagaaaact 22821
>gb|AC008071.2| Homo sapiens BAC clone RP11-388L11 from 7, complete sequence Length = 129938 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 atcttctgctactgttgaaagaaa 268 ||||| |||||||||||||||||| Sbjct: 11232 atcttttgctactgttgaaagaaa 11255
>gb|AC003044.1| Homo sapiens PAC clone RP5-1055C4 from 7, complete sequence Length = 81231 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 aaagaaatcagtagaaaact 281 |||||||||||||||||||| Sbjct: 54013 aaagaaatcagtagaaaact 54032
>ref|XM_501336.1| Yarrowia lipolytica CLIB122, YALI0C01694g predicted mRNA Length = 3567 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 gaaccaccatcctgctcctg 440 |||||||||||||||||||| Sbjct: 1613 gaaccaccatcctgctcctg 1594
>emb|AL391374.9| Human DNA sequence from clone RP11-631G24 on chromosome 13 Contains a novel gene, complete sequence Length = 172883 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 tcgatatcctgaattgttgttctg 596 |||||||||||||||||| ||||| Sbjct: 108638 tcgatatcctgaattgtttttctg 108661
>emb|AL158048.35| Human DNA sequence from clone RP5-963K15 on chromosome 1p36.21-36.33 Contains the SLC2A5 gene for solute carrier family 2 (facilitated glucose/fructose transporter) member 5, two novel genes and two CpG islands, complete sequence Length = 139111 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 aagaaagacacccaaagggcatct 35 ||||||||||| |||||||||||| Sbjct: 24663 aagaaagacacacaaagggcatct 24640
>emb|Y16773.1|LEAPX Lycopersicaon esculentum APX gene, complete CDS Length = 4460 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 taaattttcaattttggcct 233 |||||||||||||||||||| Sbjct: 1886 taaattttcaattttggcct 1905
>gb|AF510489.1| Brassica nigra isolate 173ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510488.1| Brassica nigra isolate 176ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510487.1| Brassica nigra isolate 179ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510486.1| Brassica nigra isolate 180ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510485.1| Brassica nigra isolate 182ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510484.1| Brassica nigra isolate 183ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510483.1| Brassica nigra isolate 185ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510482.1| Brassica nigra isolate 186ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510481.1| Brassica nigra isolate 54GE COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510480.1| Brassica nigra isolate 64GE COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510479.1| Brassica nigra isolate 68GE COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510478.1| Brassica nigra isolate 69GE COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510477.1| Brassica nigra isolate 70GE COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510475.1| Brassica nigra isolate 72GE COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510474.1| Brassica nigra isolate 272SI COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510473.1| Brassica nigra isolate 273SI COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510472.1| Brassica nigra isolate 274SI COL1 protein (COL1) gene, complete cds Length = 1288 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510471.1| Brassica nigra isolate 275SI COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510470.1| Brassica nigra isolate S1PO COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510469.1| Brassica nigra isolate 260SI COL1 protein (COL1) gene, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510468.1| Brassica nigra isolate S105SP COL1 protein (COL1) gene, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510467.1| Brassica nigra isolate S110SP COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510466.1| Brassica nigra isolate S13PO COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510465.1| Brassica nigra isolate S158GE COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510464.1| Brassica nigra isolate S170GE COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510463.1| Brassica nigra isolate S209ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510462.1| Brassica nigra isolate S210ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510461.1| Brassica nigra isolate S215ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510460.1| Brassica nigra isolate S216ET COL1 protein (COL1) gene, complete cds Length = 1291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510459.1| Brassica nigra isolate S6PO COL1 protein (COL1) gene, complete cds Length = 1284 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510458.1| Brassica nigra isolate S60SM COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510457.1| Brassica nigra isolate S67SM COL1 protein (COL1) gene, complete cds Length = 1284 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510456.1| Brassica nigra isolate 258SI COL1 protein (COL1) gene, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510455.1| Brassica nigra isolate 24SPA COL1 protein (COL1) gene, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510454.1| Brassica nigra isolate S182GE COL1 protein (COL1) gene, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510453.1| Brassica nigra isolate 27SPA COL1 protein (COL1) gene, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510452.1| Brassica nigra isolate S53SM COL1 protein (COL1) gene, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510451.1| Brassica nigra isolate 83GE COL1 protein (COL1) gene, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510450.1| Brassica nigra isolate 38SPA COL1 protein (COL1) gene, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>gb|AF510449.1| Brassica nigra isolate S178GE COL1 protein (COL1) gene, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 36 atcatactagtcttcttctt 17
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 ttcttgccccattccgccca 534 |||||||||||||||||||| Sbjct: 3330953 ttcttgccccattccgccca 3330972
>gb|AC025205.12| Homo sapiens chromosome 17, clone RP11-140O10, complete sequence Length = 188417 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ggtcattcattgtctgcccc 412 |||||||||||||||||||| Sbjct: 173132 ggtcattcattgtctgcccc 173113
>gb|AC147298.4| Pan troglodytes BAC clone RP43-58G7 from chromosome 7, complete sequence Length = 228916 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 aaagaaatcagtagaaaact 281 |||||||||||||||||||| Sbjct: 131906 aaagaaatcagtagaaaact 131925
>gb|AF269128.1|AF269128 Brassica nigra constans-like protein gene, complete cds Length = 1387 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atcatactagtcttcttctt 149 |||||||||||||||||||| Sbjct: 90 atcatactagtcttcttctt 71
>gb|AC116764.10| Mus musculus chromosome 15, clone RP23-388P12, complete sequence Length = 217156 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 ctgctcctggggccagggct 451 |||||||||||||||||||| Sbjct: 124183 ctgctcctggggccagggct 124164
>gb|AC009526.4|AC009526 Arabidopsis thaliana chromosome I BAC F2J6 genomic sequence, complete sequence Length = 108061 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gtcttcttcttcctccgacc 158 |||||||||||||||||||| Sbjct: 106866 gtcttcttcttcctccgacc 106885
>gb|AC006423.7|AC006423 Arabidopsis thaliana chromosome I BAC F28H19 genomic sequence, complete sequence Length = 131692 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gtcttcttcttcctccgacc 158 |||||||||||||||||||| Sbjct: 24827 gtcttcttcttcctccgacc 24846
>dbj|AB025632.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQJ2 Length = 51440 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ttttttctttaagaaagaca 21 |||||||||||||||||||| Sbjct: 4913 ttttttctttaagaaagaca 4932
>dbj|AB073155.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F19O5 Length = 116597 Score = 40.1 bits (20), Expect = 8.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 479 ttgggaatcttnttccttgatca 501 ||||||||||| ||||||||||| Sbjct: 102415 ttgggaatcttcttccttgatca 102437
>gb|AC140070.3| Mus musculus BAC clone RP24-161L16 from 9, complete sequence Length = 168604 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 actgaacatcaagaagttga 206 |||||||||||||||||||| Sbjct: 142345 actgaacatcaagaagttga 142364
>gb|AC005900.1|AC005900 Homo sapiens chromosome 17, clone hRPK.998_F_8, complete sequence Length = 175066 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ggtcattcattgtctgcccc 412 |||||||||||||||||||| Sbjct: 48885 ggtcattcattgtctgcccc 48866
>gb|AC164373.4| Mus musculus chromosome 1, clone RP23-36O22, complete sequence Length = 171278 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 agaaagacacccaaagggca 32 |||||||||||||||||||| Sbjct: 99571 agaaagacacccaaagggca 99552
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ttttctttaagaaagacacc 23 |||||||||||||||||||| Sbjct: 851852 ttttctttaagaaagacacc 851833
>emb|AL589986.15| Human DNA sequence from clone RP11-107M16 on chromosome 1 Contains the THH gene for trichohyalin, two novel genes, a family with sequence similarity 16 member A X-linked (FAM16AX) pseudogene, the 5' end of a variant of a novel gene and the gene for a novel S-100/ICaBP type calcium binding domain EF hand domain and Filaggrin domain containing protein, complete sequence Length = 151578 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 ctaattggggttcaaagcca 383 |||||||||||||||||||| Sbjct: 83239 ctaattggggttcaaagcca 83220
>gb|AC123878.4| Mus musculus BAC clone RP23-318I20 from 3, complete sequence Length = 215121 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 acagccagccagtacagtag 79 |||||||||||||||||||| Sbjct: 11444 acagccagccagtacagtag 11425
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 gaaccaccatcctgctcctg 440 |||||||||||||||||||| Sbjct: 232270 gaaccaccatcctgctcctg 232289
>dbj|AP006137.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT37K17, TM0239, complete sequence Length = 106506 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 tacacttctgatgaacaggaagga 345 ||||||||||||||| |||||||| Sbjct: 15635 tacacttctgatgaagaggaagga 15658
>emb|AL670462.8| Mouse DNA sequence from clone RP23-225F2 on chromosome X, complete sequence Length = 199841 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 tggggttcaaagccagggcg 388 |||||||||||||||||||| Sbjct: 116042 tggggttcaaagccagggcg 116061
>emb|AL663068.12| Mouse DNA sequence from clone RP23-30J5 on chromosome X, complete sequence Length = 225435 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 catcaagaagttgacaacgaataa 216 ||||||||||||||| |||||||| Sbjct: 96525 catcaagaagttgaccacgaataa 96502
>gb|AY856075.1| Brugia malayi Bm-DAF-2 (Bm-daf-2) mRNA, complete cds Length = 4617 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 gcgtcattacaggacatctg 623 |||||||||||||||||||| Sbjct: 314 gcgtcattacaggacatctg 333
>gb|M16673.1|CATFES10 Feline c-fes/fps proto-oncogene-encoded protein, exon 10 Length = 114 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 tcctgctcctggggccaggg 449 |||||||||||||||||||| Sbjct: 28 tcctgctcctggggccaggg 9 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,273,497 Number of Sequences: 3902068 Number of extensions: 7273497 Number of successful extensions: 156919 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 156623 Number of HSP's gapped (non-prelim): 296 length of query: 633 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 610 effective length of database: 17,143,297,704 effective search space: 10457411599440 effective search space used: 10457411599440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)