ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38e23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PI3R6_HUMAN (Q5UE93) Phosphoinositide 3-kinase regulatory subuni... 31 4.2
2MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 ... 30 7.2

>PI3R6_HUMAN (Q5UE93) Phosphoinositide 3-kinase regulatory subunit 6|
           (Phosphoinositide 3-kinase gamma adapter protein of 87
           kDa) (p87 PI3K adapter protein) (p87PIKAP)
          Length = 754

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 299 WYPQAINSLAP*HYKTRSSFCLQNRSLPPSLTHSLLIQLFILDPNSMIIHLTDQPL 466
           WY   +N+L P  +K           +PPSL  S  +  FILD  +  I +  QP+
Sbjct: 487 WYQSNVNTLCPAIHKLAE--------MPPSLDTSRTVDPFILDVITYYIRMGTQPI 534



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>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor|
           (MAdCAM-1) (hMAdCAM-1)
          Length = 406

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 195 IIYMVADLRRD*PFLVNTPSSCLCAATERKPTQHAGIHRQLIPLLHSIT 341
           +++ V +  R  P     P +  C AT R P      HRQ IP+LHS T
Sbjct: 181 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELS-HRQAIPVLHSPT 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,123,637
Number of Sequences: 219361
Number of extensions: 2021673
Number of successful extensions: 4939
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4938
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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