ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37p12 |
|---|---|
| Clone Library Name | barley_pub |
>UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 63.5 bits (153), Expect = 4e-10 Identities = 38/103 (36%), Positives = 50/103 (48%) Frame = -3 Query: 548 GTQTRSXCYVADMVNGLMKLMXXXXXXXXXXXXXGEFXMLELAXNVKEXIXXXXXXXXXX 369 G+QTR+ YV+D+VNGL+ LM E +LE A +K + Sbjct: 293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS 352 Query: 368 XXXXDPRXRKPDITKAKEVXDWEPKVVLRDGLVLMEDDFRERL 240 DP+ RKPDI KAK + WEP V L +GL FR+ L Sbjct: 353 EAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
>UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 63.5 bits (153), Expect = 4e-10 Identities = 38/103 (36%), Positives = 50/103 (48%) Frame = -3 Query: 548 GTQTRSXCYVADMVNGLMKLMXXXXXXXXXXXXXGEFXMLELAXNVKEXIXXXXXXXXXX 369 G+QTR+ YV+D+VNGL+ LM E +LE A +K + Sbjct: 293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS 352 Query: 368 XXXXDPRXRKPDITKAKEVXDWEPKVVLRDGLVLMEDDFRERL 240 DP+ RKPDI KAK + WEP V L +GL FR+ L Sbjct: 353 EAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
>UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 63.5 bits (153), Expect = 4e-10 Identities = 38/103 (36%), Positives = 50/103 (48%) Frame = -3 Query: 548 GTQTRSXCYVADMVNGLMKLMXXXXXXXXXXXXXGEFXMLELAXNVKEXIXXXXXXXXXX 369 G+QTR+ YV+D+VNGL+ LM E +LE A +K + Sbjct: 293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS 352 Query: 368 XXXXDPRXRKPDITKAKEVXDWEPKVVLRDGLVLMEDDFRERL 240 DP+ RKPDI KAK + WEP V L +GL FR+ L Sbjct: 353 EAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
>UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 63.5 bits (153), Expect = 4e-10 Identities = 38/103 (36%), Positives = 50/103 (48%) Frame = -3 Query: 548 GTQTRSXCYVADMVNGLMKLMXXXXXXXXXXXXXGEFXMLELAXNVKEXIXXXXXXXXXX 369 G+QTR+ YV+D+VNGL+ LM E +LE A +K + Sbjct: 293 GSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS 352 Query: 368 XXXXDPRXRKPDITKAKEVXDWEPKVVLRDGLVLMEDDFRERL 240 DP+ RKPDI KAK + WEP V L +GL FR+ L Sbjct: 353 EAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
>UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 421 Score = 61.2 bits (147), Expect = 2e-09 Identities = 36/103 (34%), Positives = 50/103 (48%) Frame = -3 Query: 548 GTQTRSXCYVADMVNGLMKLMXXXXXXXXXXXXXGEFXMLELAXNVKEXIXXXXXXXXXX 369 G QTR+ YV+D+VNGL+ LM E +++ A +K+ + Sbjct: 294 GEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLS 353 Query: 368 XXXXDPRXRKPDITKAKEVXDWEPKVVLRDGLVLMEDDFRERL 240 DP+ RKPDI KAK + WEP V L +GL FR+ L Sbjct: 354 EAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396
>UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 418 Score = 61.2 bits (147), Expect = 2e-09 Identities = 34/92 (36%), Positives = 46/92 (50%) Frame = -3 Query: 548 GTQTRSXCYVADMVNGLMKLMXXXXXXXXXXXXXGEFXMLELAXNVKEXIXXXXXXXXXX 369 G+QTR+ YV+D+VNGL+ LM E +LE A +K + Sbjct: 291 GSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLP 350 Query: 368 XXXXDPRXRKPDITKAKEVXDWEPKVVLRDGL 273 DP+ R+PDI KAK + WEP V L +GL Sbjct: 351 EAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGL 382
>ARNA_SALTI (Q8Z540) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 32.0 bits (71), Expect = 1.2 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -3 Query: 344 RKPDITKAKEVXDWEPKVVLRDGLVLMEDDFRERLAVPXKA 222 RKP I A+ DWEP + +RD + D F + + +A Sbjct: 619 RKPSIDNARRCLDWEPSIAMRDTVEETLDFFLRSVDIAERA 659
>ARNA_SALPA (Q5PNA6) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 32.0 bits (71), Expect = 1.2 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -3 Query: 344 RKPDITKAKEVXDWEPKVVLRDGLVLMEDDFRERLAVPXKA 222 RKP I A+ DWEP + +RD + D F + + +A Sbjct: 619 RKPSIDNARRCLDWEPSIAMRDTVEETLDFFLRSVDIAERA 659
>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 1) (OsGME-1) Length = 378 Score = 30.8 bits (68), Expect = 2.7 Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 3/95 (3%) Frame = -3 Query: 548 GTQTRSXCYVADMVNGLMKLMXXXXXXXXXXXXXGEFXMLELAXNVKEXIXXXXXXXXXX 369 G QTRS ++ + V G+++L M E+A E I Sbjct: 240 GLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMA----EIILSFEDRELPI 295 Query: 368 XXXXDP---RXRKPDITKAKEVXDWEPKVVLRDGL 273 P R R D T KE W P + L+DGL Sbjct: 296 HHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGL 330
>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 2) Length = 371 Score = 30.4 bits (67), Expect = 3.5 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 3/106 (2%) Frame = -3 Query: 548 GTQTRSXCYVADMVNGLMKLMXXXXXXXXXXXXXGEFXMLELAXNVKEXIXXXXXXXXXX 369 G QTRS ++ + V G+++L M E+A E + Sbjct: 233 GLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMA----EIVLSFENKQLPI 288 Query: 368 XXXXDP---RXRKPDITKAKEVXDWEPKVVLRDGLVLMEDDFRERL 240 P R R D T KE W P + L+DGL + +E+L Sbjct: 289 HHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQL 334
>ARNA_SALCH (P0C0R6) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 344 RKPDITKAKEVXDWEPKVVLRDGLVLMEDDFRERLAVPXKA 222 RKP I A+ WEP + +RD + D F + V +A Sbjct: 619 RKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAERA 659
>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) Length = 328 Score = 29.3 bits (64), Expect = 7.8 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Frame = -3 Query: 548 GTQTRSXCYVADMVNGLMKLMXXXXXXXXXXXXX-GEFXMLELAXNVKEXIXXXXXXXXX 372 G+ R +V D+ + ++ LM E + ELA VKE + Sbjct: 221 GSPLREFLHVDDLADAVIFLMDHYSGLEHVNVGSGSEVTIKELAELVKEVVGFQGKLVWD 280 Query: 371 XXXXXDPRXRKPDITKAKEVXDWEPKVVLRDGLV 270 + D +K +E+ W+PKV L++GLV Sbjct: 281 SSKPDGTPRKLMDSSKIQEMG-WKPKVPLKEGLV 313
>ARNA_PSEAE (Q9HY63) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 662 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%) Frame = -3 Query: 344 RKPDITKAKEVXDWEPKVVLRDGL-----VLMEDDFRERLA 237 RKP I A+ + DW+P + LR+ + + + RER A Sbjct: 620 RKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALREREA 660
>Y4NL_RHISN (P55584) Hypothetical 38.7 kDa protein y4nL| Length = 356 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/21 (52%), Positives = 17/21 (80%) Frame = -3 Query: 335 DITKAKEVXDWEPKVVLRDGL 273 DITKA++V + PK+ LR+G+ Sbjct: 322 DITKARKVLGYAPKIALREGM 342
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -1 Query: 307 TGSPRSSYVTAWCSWRTTSGSVWQCPXRPRPKAXSL 200 T SP +S+ T CS T SG +WQC P P S+ Sbjct: 394 TYSPGTSFNTT-CSSCTCSGGLWQCQDLPCPGTCSV 428
>ARNA_SALTY (O52325) Bifunctional polymyxin resistance arnA protein (Polymyxin| resistance protein pmrI) [Includes: UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1 Length = 660 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = -3 Query: 344 RKPDITKAKEVXDWEPKVVLRDGLVLMEDDFRERLAVPXKA 222 RKP I A+ WEP + +RD + D F + + +A Sbjct: 619 RKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDIAERA 659 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,067,200 Number of Sequences: 219361 Number of extensions: 801675 Number of successful extensions: 1448 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1426 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1448 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
