ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37p12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (... 906 0.0
2emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-gluc... 351 2e-93
3gb|AY104952.1| Zea mays PCO092342 mRNA sequence 303 3e-79
4dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRN... 295 8e-77
5dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 8e-77
6dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 8e-77
7gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence 283 3e-73
8dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 3e-33
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 143 7e-31
10gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 143 7e-31
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 143 7e-31
12gb|U82433.1|PAU82433 Prunus armeniaca thymidine diphospho-glucos... 64 5e-07
13gb|AY922315.1| Populus tomentosa UDP-glucuronic acid decarboxyla... 54 5e-04
14gb|AY619950.1| Nicotiana tabacum UDP-glucuronate decarboxylase 1... 54 5e-04
15emb|AJ275318.1|CAR275318 Cicer arietinum mRNA for dTDP-glucose 4... 50 0.008
16gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete... 42 1.9
17dbj|AB059568.1| Pisum sativum uxs1 mRNA for UDP-D-glucuronate ca... 42 1.9
18ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G62840 ... 40 7.5
19ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID ... 40 7.5
20gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, co... 40 7.5
21emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BA... 40 7.5
22gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co... 40 7.5
23gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, co... 40 7.5
24gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, com... 40 7.5
25gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, co... 40 7.5
26emb|BX822583.1|CNS0A63N Arabidopsis thaliana Full-length cDNA Co... 40 7.5
27emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Co... 40 7.5
28gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarbox... 40 7.5
29emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4... 40 7.5

>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA, complete
            cds
          Length = 1433

 Score =  906 bits (457), Expect = 0.0
 Identities = 520/551 (94%)
 Strand = Plus / Minus

                                                                        
Query: 3    gttccgcaaaaggngggngtaatacaaacagccnggccttgtntataangtttntaataa 62
            ||||||||||| | ||| ||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct: 1335 gttccgcaaaaagcgggagtaatacaaacagccaggccttgtatataaagtttctaataa 1276

                                                                        
Query: 63   tacaatctttcangngaacgacaaaggngtaatnggtttattggaactcaaattccgtaa 122
            |||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 1275 tacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccgtaa 1216

                                                                        
Query: 123  cgaaacacagcancgaatnttgacgaacccacccaactntgagtatgctntggcaaatng 182
            |||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||||| |
Sbjct: 1215 cgaaacacagcaacgaatattgacgaacccacccaactatgagtatgctctggcaaattg 1156

                                                                        
Query: 183  gngatgtacgccaaacncagggaagnggccttaggccttggccttnttgggcactgccaa 242
            | |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 1155 gtgatgtacgccaaacgcagggaagtggccttaggccttggccttcttgggcactgccaa 1096

                                                                        
Query: 243  acgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctc 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 acgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctc 1036

                                                                        
Query: 303  ccagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagg 362
            |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1035 ccagtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgagggtcatcagg 976

                                                                        
Query: 363  agtgttctnagtcatcgtcactgtcacctntgggttgatnaactccttnacgttntcagc 422
            |||||||| |||||||||||||||||||| ||||||||| |||||||| ||||| |||||
Sbjct: 975  agtgttctcagtcatcgtcactgtcacctctgggttgatcaactccttcacgttctcagc 916

                                                                        
Query: 423  aagttccagcatggngaattcacctgggttcccaatgttaatgggtccagngttgtctcc 482
            |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 915  aagttccagcatggtgaattcacctgggttcccaatgttaatgggtccagtgttgtctcc 856

                                                                        
Query: 483  attcatnagcttcataagaccattgaccatatcagcaacgtagcanaagctcctagtctg 542
            |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 855  attcatcagcttcataagaccattgaccatatcagcaacgtagcagaagctcctagtctg 796

                       
Query: 543  tgttcctggct 553
            |||||||||||
Sbjct: 795  tgttcctggct 785



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>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene)
          Length = 1562

 Score =  351 bits (177), Expect = 2e-93
 Identities = 297/341 (87%)
 Strand = Plus / Minus

                                                                        
Query: 213  ttaggccttggccttnttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 272
            ||||||||| | ||  |||||||| ||||  |||||||||||||| ||||||||||||||
Sbjct: 1291 ttaggccttagtctccttgggcacagccaggcgctcccggaagtcatcctccatgagcac 1232

                                                                        
Query: 273  caagccgtcacgtaggacgaccttgggctcccagtcaanaacctcctttgcctttgtgat 332
            |||||||||||| || |||||||| ||||||||  | | ||| ||||| |||||||||||
Sbjct: 1231 caagccgtcacgcagaacgaccttaggctcccaccccagaacttccttcgcctttgtgat 1172

                                                                        
Query: 333  gtcaggcttcctntggcgagggtcatcaggagtgttctnagtcatcgtcactgtcacctn 392
            ||| |||||||| |||||||| ||||||||||||||||  ||||||||||||||||||| 
Sbjct: 1171 gtctggcttcctctggcgaggatcatcaggagtgttctcggtcatcgtcactgtcacctc 1112

                                                                        
Query: 393  tgggttgatnaactccttnacgttntcagcaagttccagcatggngaattcacctgggtt 452
            ||||||||| ||||| || || || |||||||||||||||||||  ||||||||||||||
Sbjct: 1111 tgggttgatcaactctttcactttctcagcaagttccagcatggtaaattcacctgggtt 1052

                                                                        
Query: 453  cccaatgttaatgggtccagngttgtctccattcatnagcttcataagaccattgaccat 512
             || |  ||||| ||||||| ||||| ||||||||| ||||| ||||||||||  |||||
Sbjct: 1051 gcccaaattaatcggtccagtgttgtttccattcatcagcttaataagaccatcaaccat 992

                                                     
Query: 513  atcagcaacgtagcanaagctcctagtctgtgttcctggct 553
            ||| || |||||||| |||||||||||||||||||||||||
Sbjct: 991  atcggcgacgtagcagaagctcctagtctgtgttcctggct 951



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 60   taatacaatctttcangngaacgacaaaggngtaatnggtttattggaactcaaattccg 119
            |||||||||||||||   ||||||||| |  ||| |  ||||||||||||||||||||||
Sbjct: 1419 taatacaatctttcaattgaacgacaacgatgtattcagtttattggaactcaaattccg 1360

                    
Query: 120  taacgaaa 127
            ||| ||||
Sbjct: 1359 taatgaaa 1352



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>gb|AY104952.1| Zea mays PCO092342 mRNA sequence
          Length = 1825

 Score =  303 bits (153), Expect = 3e-79
 Identities = 291/341 (85%)
 Strand = Plus / Minus

                                                                        
Query: 213  ttaggccttggccttnttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 272
            |||||||||||  || |||||||| ||||  ||||||||||| || ||||||||||||||
Sbjct: 1535 ttaggccttggttttcttgggcacggccaggcgctcccggaaatcatcctccatgagcac 1476

                                                                        
Query: 273  caagccgtcacgtaggacgaccttgggctcccagtcaanaacctcctttgcctttgtgat 332
            |||||||||    ||||||| ||||||||||||  | | ||| ||||||||||| |||||
Sbjct: 1475 caagccgtccttcaggacgatcttgggctcccaccctagaacttcctttgccttggtgat 1416

                                                                        
Query: 333  gtcaggcttcctntggcgagggtcatcaggagtgttctnagtcatcgtcactgtcacctn 392
            ||| |||||||| ||||| || ||||||||||||||||  |||||||||||||| |  | 
Sbjct: 1415 gtccggcttcctctggcggggatcatcaggagtgttctcggtcatcgtcactgttatatc 1356

                                                                        
Query: 393  tgggttgatnaactccttnacgttntcagcaagttccagcatggngaattcacctgggtt 452
            |||||| || |||||||| || || ||||||||||||||||||| |||||||||||||||
Sbjct: 1355 tgggttaatcaactccttcacattctcagcaagttccagcatggtgaattcacctgggtt 1296

                                                                        
Query: 453  cccaatgttaatgggtccagngttgtctccattcatnagcttcataagaccattgaccat 512
            ||| | |||||| ||||||| ||||| ||| ||||| ||| | ||||||||||  |||||
Sbjct: 1295 ccccaagttaatcggtccagtgttgtttccgttcatcagcctaataagaccatcaaccat 1236

                                                     
Query: 513  atcagcaacgtagcanaagctcctagtctgtgttcctggct 553
            ||| || || ||||| |||||||||||||||||||||||||
Sbjct: 1235 atcggcgacatagcagaagctcctagtctgtgttcctggct 1195



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 98   gtttattggaactcaaattccgtaacgaaa 127
            ||||||||||||||||||||||||| ||||
Sbjct: 1639 gtttattggaactcaaattccgtaatgaaa 1610



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>dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRNA for UDP-glucuronic
            acid decarboxylase, complete cds
          Length = 1053

 Score =  295 bits (149), Expect = 8e-77
 Identities = 267/310 (86%)
 Strand = Plus / Minus

                                                                        
Query: 244  cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303
            ||||||||||| || || ||||||||||||||||| ||||| || |||| ||||||||||
Sbjct: 1022 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 963

                                                                        
Query: 304  cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363
            ||  | | ||| |||||||||||||| ||||| |||||||| || ||||| |||||||||
Sbjct: 962  caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 903

                                                                        
Query: 364  gtgttctnagtcatcgtcactgtcacctntgggttgatnaactccttnacgttntcagca 423
            ||||||| |||||| || || || |||| ||||||||| |||||||| || || ||||||
Sbjct: 902  gtgttctcagtcattgtgacggtaacctctgggttgatcaactccttcacattctcagca 843

                                                                        
Query: 424  agttccagcatggngaattcacctgggttcccaatgttaatgggtccagngttgtctcca 483
            ||||||||||||| ||||||||||||||| || |  ||||| ||||||| |||||| || 
Sbjct: 842  agttccagcatggtgaattcacctgggtttcccaaattaattggtccagtgttgtccccg 783

                                                                        
Query: 484  ttcatnagcttcataagaccattgaccatatcagcaacgtagcanaagctcctagtctgt 543
            ||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| |||
Sbjct: 782  ttcatcagcttaataagaccattaaccatgtcagcaacatagcagaagctcctagtttgt 723

                      
Query: 544  gttcctggct 553
            ||||||||||
Sbjct: 722  gttcctggct 713



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>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full
            insert sequence
          Length = 1811

 Score =  295 bits (149), Expect = 8e-77
 Identities = 267/310 (86%)
 Strand = Plus / Minus

                                                                        
Query: 244  cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303
            ||||||||||| || || ||||||||||||||||| ||||| || |||| ||||||||||
Sbjct: 1510 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 1451

                                                                        
Query: 304  cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363
            ||  | | ||| |||||||||||||| ||||| |||||||| || ||||| |||||||||
Sbjct: 1450 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 1391

                                                                        
Query: 364  gtgttctnagtcatcgtcactgtcacctntgggttgatnaactccttnacgttntcagca 423
            ||||||| |||||| || || || |||| ||||||||| |||||||| || || ||||||
Sbjct: 1390 gtgttctcagtcattgtgacggtaacctctgggttgatcaactccttcacattctcagca 1331

                                                                        
Query: 424  agttccagcatggngaattcacctgggttcccaatgttaatgggtccagngttgtctcca 483
            ||||||||||||| ||||||||||||||| || |  ||||| ||||||| |||||| || 
Sbjct: 1330 agttccagcatggtgaattcacctgggtttcccaaattaattggtccagtgttgtccccg 1271

                                                                        
Query: 484  ttcatnagcttcataagaccattgaccatatcagcaacgtagcanaagctcctagtctgt 543
            ||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| |||
Sbjct: 1270 ttcatcagcttaataagaccattaaccatgtcagcaacatagcagaagctcctagtttgt 1211

                      
Query: 544  gttcctggct 553
            ||||||||||
Sbjct: 1210 gttcctggct 1201



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>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full
            insert sequence
          Length = 1411

 Score =  295 bits (149), Expect = 8e-77
 Identities = 267/310 (86%)
 Strand = Plus / Minus

                                                                        
Query: 244  cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303
            ||||||||||| || || ||||||||||||||||| ||||| || |||| ||||||||||
Sbjct: 1121 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 1062

                                                                        
Query: 304  cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363
            ||  | | ||| |||||||||||||| ||||| |||||||| || ||||| |||||||||
Sbjct: 1061 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 1002

                                                                        
Query: 364  gtgttctnagtcatcgtcactgtcacctntgggttgatnaactccttnacgttntcagca 423
            ||||||| |||||| || || || |||| ||||||||| |||||||| || || ||||||
Sbjct: 1001 gtgttctcagtcattgtgacggtaacctctgggttgatcaactccttcacattctcagca 942

                                                                        
Query: 424  agttccagcatggngaattcacctgggttcccaatgttaatgggtccagngttgtctcca 483
            ||||||||||||| ||||||||||||||| || |  ||||| ||||||| |||||| || 
Sbjct: 941  agttccagcatggtgaattcacctgggtttcccaaattaattggtccagtgttgtccccg 882

                                                                        
Query: 484  ttcatnagcttcataagaccattgaccatatcagcaacgtagcanaagctcctagtctgt 543
            ||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| |||
Sbjct: 881  ttcatcagcttaataagaccattaaccatgtcagcaacatagcagaagctcctagtttgt 822

                      
Query: 544  gttcctggct 553
            ||||||||||
Sbjct: 821  gttcctggct 812



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>gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence
          Length = 958

 Score =  283 bits (143), Expect = 3e-73
 Identities = 264/308 (85%)
 Strand = Plus / Minus

                                                                       
Query: 245 gctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctccc 304
           |||||||||| || ||||||||||||||||||||||| |  |||| ||  ||||||||||
Sbjct: 787 gctcccggaaatcatcctccatgagcaccaagccgtcccccaggaagattttgggctccc 728

                                                                       
Query: 305 agtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcaggag 364
           |  | | ||| |||||  |||||||||| || |||||||| || || |||||||||||||
Sbjct: 727 atcccaaaacttccttcccctttgtgatatccggcttcctctgacgggggtcatcaggag 668

                                                                       
Query: 365 tgttctnagtcatcgtcactgtcacctntgggttgatnaactccttnacgttntcagcaa 424
           ||||||  ||||| ||||||||||| | ||||||||| |||||||| || || |||||||
Sbjct: 667 tgttctcggtcattgtcactgtcacatctgggttgatcaactccttcacattctcagcaa 608

                                                                       
Query: 425 gttccagcatggngaattcacctgggttcccaatgttaatgggtccagngttgtctccat 484
           |||||||||||| |||||||||||||||||| | |||||| |||||||  |||| |||||
Sbjct: 607 gttccagcatggtgaattcacctgggttccccaagttaatcggtccagtcttgtttccat 548

                                                                       
Query: 485 tcatnagcttcataagaccattgaccatatcagcaacgtagcanaagctcctagtctgtg 544
           |||| ||||| ||||||||||  |||||||| ||||| ||||| || |||||||||||||
Sbjct: 547 tcatcagcttaataagaccatcaaccatatcggcaacatagcagaaactcctagtctgtg 488

                   
Query: 545 ttcctggc 552
           ||||||||
Sbjct: 487 ttcctggc 480



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 103 ttggaactcaaattccgtaacgaaa 127
           |||||||||||||||||||| ||||
Sbjct: 921 ttggaactcaaattccgtaatgaaa 897



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>dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A03, full
           insert sequence
          Length = 472

 Score =  151 bits (76), Expect = 3e-33
 Identities = 143/167 (85%)
 Strand = Plus / Minus

                                                                       
Query: 244 cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303
           ||||||||||| || || ||||||||||||||||| ||||| || |||| | ||||||||
Sbjct: 175 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcctgggctcc 116

                                                                       
Query: 304 cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363
           ||  | | |||||||||||||||||| ||||| |||||||| || ||||| |||||||||
Sbjct: 115 caccccaaaacctcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 56

                                                          
Query: 364 gtgttctnagtcatcgtcactgtcacctntgggttgatnaactcctt 410
           ||||||| |||||| || || || |||| ||||||||| ||||||||
Sbjct: 55  gtgttctcagtcattgtgacggtaacctctgggttgatcaactcctt 9



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 7e-31
 Identities = 139/163 (85%)
 Strand = Plus / Minus

                                                                           
Query: 244     cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303
               ||||||||||| || || ||||||||||||||||| ||||| || |||| ||||||||||
Sbjct: 9412260 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 9412201

                                                                           
Query: 304     cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363
               ||  | | ||| |||||||||||||| ||||| |||||||| || ||||| |||||||||
Sbjct: 9412200 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 9412141

                                                          
Query: 364     gtgttctnagtcatcgtcactgtcacctntgggttgatnaact 406
               ||||||| |||||| || || || |||| ||||||||| ||||
Sbjct: 9412140 gtgttctcagtcattgtgacggtaacctctgggttgatcaact 9412098



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                             
Query: 508     accatatcagcaacgtagcanaagctcctagtctgtgttcctggct 553
               ||||| |||||||| ||||| ||||||||||| |||||||||||||
Sbjct: 9411692 accatgtcagcaacatagcagaagctcctagtttgtgttcctggct 9411647



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 405     ctccttnacgttntcagcaagttccagcatggngaattcacct 447
               |||||| || || ||||||||||||||||||| ||||||||||
Sbjct: 9412015 ctccttcacattctcagcaagttccagcatggtgaattcacct 9411973



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                              
Query: 460     ttaatgggtccagngttgtctccattcatnagcttcataagaccatt 506
               ||||| ||||||| |||||| || ||||| ||||| |||||||||||
Sbjct: 9411835 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 9411789



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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score =  143 bits (72), Expect = 7e-31
 Identities = 139/163 (85%)
 Strand = Plus / Minus

                                                                          
Query: 244    cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303
              ||||||||||| || || ||||||||||||||||| ||||| || |||| ||||||||||
Sbjct: 109660 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 109601

                                                                          
Query: 304    cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363
              ||  | | ||| |||||||||||||| ||||| |||||||| || ||||| |||||||||
Sbjct: 109600 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 109541

                                                         
Query: 364    gtgttctnagtcatcgtcactgtcacctntgggttgatnaact 406
              ||||||| |||||| || || || |||| ||||||||| ||||
Sbjct: 109540 gtgttctcagtcattgtgacggtaacctctgggttgatcaact 109498



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                            
Query: 508    accatatcagcaacgtagcanaagctcctagtctgtgttcctggct 553
              ||||| |||||||| ||||| ||||||||||| |||||||||||||
Sbjct: 109092 accatgtcagcaacatagcagaagctcctagtttgtgttcctggct 109047



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 405    ctccttnacgttntcagcaagttccagcatggngaattcacct 447
              |||||| || || ||||||||||||||||||| ||||||||||
Sbjct: 109415 ctccttcacattctcagcaagttccagcatggtgaattcacct 109373



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 460    ttaatgggtccagngttgtctccattcatnagcttcataagaccatt 506
              ||||| ||||||| |||||| || ||||| ||||| |||||||||||
Sbjct: 109235 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 109189



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 7e-31
 Identities = 139/163 (85%)
 Strand = Plus / Minus

                                                                           
Query: 244     cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303
               ||||||||||| || || ||||||||||||||||| ||||| || |||| ||||||||||
Sbjct: 9410381 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 9410322

                                                                           
Query: 304     cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363
               ||  | | ||| |||||||||||||| ||||| |||||||| || ||||| |||||||||
Sbjct: 9410321 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 9410262

                                                          
Query: 364     gtgttctnagtcatcgtcactgtcacctntgggttgatnaact 406
               ||||||| |||||| || || || |||| ||||||||| ||||
Sbjct: 9410261 gtgttctcagtcattgtgacggtaacctctgggttgatcaact 9410219



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                             
Query: 508     accatatcagcaacgtagcanaagctcctagtctgtgttcctggct 553
               ||||| |||||||| ||||| ||||||||||| |||||||||||||
Sbjct: 9409813 accatgtcagcaacatagcagaagctcctagtttgtgttcctggct 9409768



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 405     ctccttnacgttntcagcaagttccagcatggngaattcacct 447
               |||||| || || ||||||||||||||||||| ||||||||||
Sbjct: 9410136 ctccttcacattctcagcaagttccagcatggtgaattcacct 9410094



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                              
Query: 460     ttaatgggtccagngttgtctccattcatnagcttcataagaccatt 506
               ||||| ||||||| |||||| || ||||| ||||| |||||||||||
Sbjct: 9409956 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 9409910



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>gb|U82433.1|PAU82433 Prunus armeniaca thymidine diphospho-glucose 4-6-dehydratase
           homolog mRNA, partial cds
          Length = 1012

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 316 tcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcaggagtgttct 370
           ||||| || |||||||||||||||||||| |||||||| ||||| || |||||||
Sbjct: 702 tccttcgcttttgtgatgtcaggcttcctctggcgaggatcatccggcgtgttct 648



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 439 aattcacctgggttcccaatgttaatgggtccagngttgtctcc 482
           ||||||||||| || |||||||| || ||||||| |||||||||
Sbjct: 579 aattcacctggatttccaatgttgatcggtccagtgttgtctcc 536



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>gb|AY922315.1| Populus tomentosa UDP-glucuronic acid decarboxylase 3 (UXS3) mRNA,
           complete cds
          Length = 1129

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 317 cctttgcctttgtgatgtcaggcttcctntggcgagggtcatcaggagtgttct 370
           ||||||||||||| |||||||| ||||| || || || ||||||||||| ||||
Sbjct: 981 cctttgcctttgtaatgtcaggtttcctctgtcgtggatcatcaggagtattct 928



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>gb|AY619950.1| Nicotiana tabacum UDP-glucuronate decarboxylase 1 mRNA, complete
           cds
          Length = 1279

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                       
Query: 397 ttgatnaactccttnacgttntcagcaagttccagcatggngaattcacctgggttccca 456
           ||||| | |||||| || || || || ||||| | ||| | |||||||||||| || |||
Sbjct: 886 ttgatgagctccttcacattctccgcgagttcaatcatcgtgaattcacctggatttcca 827

                                     
Query: 457 atgttaatgggtccagngttgtctcc 482
           |||||||| ||||||| ||| |||||
Sbjct: 826 atgttaattggtccagtgttatctcc 801



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 319 tttgcctttgtgatgtcaggcttcctntggcgagggtcatcaggagtgtt 368
           ||||||||||||||||| || || || || ||||| ||||| ||||||||
Sbjct: 964 tttgcctttgtgatgtccggttttctctgccgaggatcatctggagtgtt 915



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>emb|AJ275318.1|CAR275318 Cicer arietinum mRNA for dTDP-glucose 4-6-dehydratase
          Length = 1356

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 418 tcagcaagttccagcatggngaattcacctgggttcccaa 457
           ||||||||||| ||||| | ||||||||||||||| ||||
Sbjct: 900 tcagcaagttcaagcattgtgaattcacctgggtttccaa 861



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>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence
          Length = 255062

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 322    gcctttgtgatgtcaggcttc 342
              |||||||||||||||||||||
Sbjct: 163613 gcctttgtgatgtcaggcttc 163593



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>dbj|AB059568.1| Pisum sativum uxs1 mRNA for UDP-D-glucuronate carboxy-lyase,
           complete cds
          Length = 1406

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 418 tcagcaagttccagcatggngaattcacctgggttcccaa 457
           ||||||||||| ||||| | ||||||||| ||||| ||||
Sbjct: 960 tcagcaagttcaagcatagtgaattcacccgggtttccaa 921



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>ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G62840 mRNA, complete cds
          Length = 1063

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 gcctttgtgatgtcaggctt 341
           ||||||||||||||||||||
Sbjct: 966 gcctttgtgatgtcaggctt 985



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>ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2);
            catalytic/ dTDP-glucose 4,6-dehydratase AT3G62830 (UXS2)
            mRNA, complete cds
          Length = 1338

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  gcctttgtgatgtcaggctt 341
            ||||||||||||||||||||
Sbjct: 1193 gcctttgtgatgtcaggctt 1174



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>gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, complete cds
          Length = 1338

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  gcctttgtgatgtcaggctt 341
            ||||||||||||||||||||
Sbjct: 1193 gcctttgtgatgtcaggctt 1174



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>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9
          Length = 110257

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   gcctttgtgatgtcaggctt 341
             ||||||||||||||||||||
Sbjct: 88182 gcctttgtgatgtcaggctt 88163



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>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 490    agcttcataagaccattgac 509
              ||||||||||||||||||||
Sbjct: 166392 agcttcataagaccattgac 166411



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>gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
          Length = 1663

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  gcctttgtgatgtcaggctt 341
            ||||||||||||||||||||
Sbjct: 1346 gcctttgtgatgtcaggctt 1327



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>gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, complete sequence
          Length = 169944

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 490   agcttcataagaccattgac 509
             ||||||||||||||||||||
Sbjct: 68254 agcttcataagaccattgac 68273



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>gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
          Length = 1701

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  gcctttgtgatgtcaggctt 341
            ||||||||||||||||||||
Sbjct: 1346 gcctttgtgatgtcaggctt 1327



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>emb|BX822583.1|CNS0A63N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB50ZB02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 451

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 gcctttgtgatgtcaggctt 341
           ||||||||||||||||||||
Sbjct: 92  gcctttgtgatgtcaggctt 73



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>emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL65ZB07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 923

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 gcctttgtgatgtcaggctt 341
           ||||||||||||||||||||
Sbjct: 564 gcctttgtgatgtcaggctt 545



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>gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS2) mRNA,
            complete cds
          Length = 1338

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  gcctttgtgatgtcaggctt 341
            ||||||||||||||||||||
Sbjct: 1193 gcctttgtgatgtcaggctt 1174



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>emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4-6-dehydratases
          Length = 1660

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  gcctttgtgatgtcaggctt 341
            ||||||||||||||||||||
Sbjct: 1332 gcctttgtgatgtcaggctt 1313


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,050,346
Number of Sequences: 3902068
Number of extensions: 2050346
Number of successful extensions: 29796
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29720
Number of HSP's gapped (non-prelim): 75
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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