| Clone Name | rbags37p12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA, complete cds Length = 1433 Score = 906 bits (457), Expect = 0.0 Identities = 520/551 (94%) Strand = Plus / Minus Query: 3 gttccgcaaaaggngggngtaatacaaacagccnggccttgtntataangtttntaataa 62 ||||||||||| | ||| ||||||||||||||| |||||||| ||||| |||| |||||| Sbjct: 1335 gttccgcaaaaagcgggagtaatacaaacagccaggccttgtatataaagtttctaataa 1276 Query: 63 tacaatctttcangngaacgacaaaggngtaatnggtttattggaactcaaattccgtaa 122 |||||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 1275 tacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccgtaa 1216 Query: 123 cgaaacacagcancgaatnttgacgaacccacccaactntgagtatgctntggcaaatng 182 |||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||||| | Sbjct: 1215 cgaaacacagcaacgaatattgacgaacccacccaactatgagtatgctctggcaaattg 1156 Query: 183 gngatgtacgccaaacncagggaagnggccttaggccttggccttnttgggcactgccaa 242 | |||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| Sbjct: 1155 gtgatgtacgccaaacgcagggaagtggccttaggccttggccttcttgggcactgccaa 1096 Query: 243 acgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1095 acgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctc 1036 Query: 303 ccagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagg 362 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1035 ccagtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgagggtcatcagg 976 Query: 363 agtgttctnagtcatcgtcactgtcacctntgggttgatnaactccttnacgttntcagc 422 |||||||| |||||||||||||||||||| ||||||||| |||||||| ||||| ||||| Sbjct: 975 agtgttctcagtcatcgtcactgtcacctctgggttgatcaactccttcacgttctcagc 916 Query: 423 aagttccagcatggngaattcacctgggttcccaatgttaatgggtccagngttgtctcc 482 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 915 aagttccagcatggtgaattcacctgggttcccaatgttaatgggtccagtgttgtctcc 856 Query: 483 attcatnagcttcataagaccattgaccatatcagcaacgtagcanaagctcctagtctg 542 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 855 attcatcagcttcataagaccattgaccatatcagcaacgtagcagaagctcctagtctg 796 Query: 543 tgttcctggct 553 ||||||||||| Sbjct: 795 tgttcctggct 785
>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene) Length = 1562 Score = 351 bits (177), Expect = 2e-93 Identities = 297/341 (87%) Strand = Plus / Minus Query: 213 ttaggccttggccttnttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 272 ||||||||| | || |||||||| |||| |||||||||||||| |||||||||||||| Sbjct: 1291 ttaggccttagtctccttgggcacagccaggcgctcccggaagtcatcctccatgagcac 1232 Query: 273 caagccgtcacgtaggacgaccttgggctcccagtcaanaacctcctttgcctttgtgat 332 |||||||||||| || |||||||| |||||||| | | ||| ||||| ||||||||||| Sbjct: 1231 caagccgtcacgcagaacgaccttaggctcccaccccagaacttccttcgcctttgtgat 1172 Query: 333 gtcaggcttcctntggcgagggtcatcaggagtgttctnagtcatcgtcactgtcacctn 392 ||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||| Sbjct: 1171 gtctggcttcctctggcgaggatcatcaggagtgttctcggtcatcgtcactgtcacctc 1112 Query: 393 tgggttgatnaactccttnacgttntcagcaagttccagcatggngaattcacctgggtt 452 ||||||||| ||||| || || || ||||||||||||||||||| |||||||||||||| Sbjct: 1111 tgggttgatcaactctttcactttctcagcaagttccagcatggtaaattcacctgggtt 1052 Query: 453 cccaatgttaatgggtccagngttgtctccattcatnagcttcataagaccattgaccat 512 || | ||||| ||||||| ||||| ||||||||| ||||| |||||||||| ||||| Sbjct: 1051 gcccaaattaatcggtccagtgttgtttccattcatcagcttaataagaccatcaaccat 992 Query: 513 atcagcaacgtagcanaagctcctagtctgtgttcctggct 553 ||| || |||||||| ||||||||||||||||||||||||| Sbjct: 991 atcggcgacgtagcagaagctcctagtctgtgttcctggct 951 Score = 63.9 bits (32), Expect = 5e-07 Identities = 58/68 (85%) Strand = Plus / Minus Query: 60 taatacaatctttcangngaacgacaaaggngtaatnggtttattggaactcaaattccg 119 ||||||||||||||| ||||||||| | ||| | |||||||||||||||||||||| Sbjct: 1419 taatacaatctttcaattgaacgacaacgatgtattcagtttattggaactcaaattccg 1360 Query: 120 taacgaaa 127 ||| |||| Sbjct: 1359 taatgaaa 1352
>gb|AY104952.1| Zea mays PCO092342 mRNA sequence Length = 1825 Score = 303 bits (153), Expect = 3e-79 Identities = 291/341 (85%) Strand = Plus / Minus Query: 213 ttaggccttggccttnttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 272 ||||||||||| || |||||||| |||| ||||||||||| || |||||||||||||| Sbjct: 1535 ttaggccttggttttcttgggcacggccaggcgctcccggaaatcatcctccatgagcac 1476 Query: 273 caagccgtcacgtaggacgaccttgggctcccagtcaanaacctcctttgcctttgtgat 332 ||||||||| ||||||| |||||||||||| | | ||| ||||||||||| ||||| Sbjct: 1475 caagccgtccttcaggacgatcttgggctcccaccctagaacttcctttgccttggtgat 1416 Query: 333 gtcaggcttcctntggcgagggtcatcaggagtgttctnagtcatcgtcactgtcacctn 392 ||| |||||||| ||||| || |||||||||||||||| |||||||||||||| | | Sbjct: 1415 gtccggcttcctctggcggggatcatcaggagtgttctcggtcatcgtcactgttatatc 1356 Query: 393 tgggttgatnaactccttnacgttntcagcaagttccagcatggngaattcacctgggtt 452 |||||| || |||||||| || || ||||||||||||||||||| ||||||||||||||| Sbjct: 1355 tgggttaatcaactccttcacattctcagcaagttccagcatggtgaattcacctgggtt 1296 Query: 453 cccaatgttaatgggtccagngttgtctccattcatnagcttcataagaccattgaccat 512 ||| | |||||| ||||||| ||||| ||| ||||| ||| | |||||||||| ||||| Sbjct: 1295 ccccaagttaatcggtccagtgttgtttccgttcatcagcctaataagaccatcaaccat 1236 Query: 513 atcagcaacgtagcanaagctcctagtctgtgttcctggct 553 ||| || || ||||| ||||||||||||||||||||||||| Sbjct: 1235 atcggcgacatagcagaagctcctagtctgtgttcctggct 1195 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 98 gtttattggaactcaaattccgtaacgaaa 127 ||||||||||||||||||||||||| |||| Sbjct: 1639 gtttattggaactcaaattccgtaatgaaa 1610
>dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRNA for UDP-glucuronic acid decarboxylase, complete cds Length = 1053 Score = 295 bits (149), Expect = 8e-77 Identities = 267/310 (86%) Strand = Plus / Minus Query: 244 cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303 ||||||||||| || || ||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 1022 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 963 Query: 304 cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363 || | | ||| |||||||||||||| ||||| |||||||| || ||||| ||||||||| Sbjct: 962 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 903 Query: 364 gtgttctnagtcatcgtcactgtcacctntgggttgatnaactccttnacgttntcagca 423 ||||||| |||||| || || || |||| ||||||||| |||||||| || || |||||| Sbjct: 902 gtgttctcagtcattgtgacggtaacctctgggttgatcaactccttcacattctcagca 843 Query: 424 agttccagcatggngaattcacctgggttcccaatgttaatgggtccagngttgtctcca 483 ||||||||||||| ||||||||||||||| || | ||||| ||||||| |||||| || Sbjct: 842 agttccagcatggtgaattcacctgggtttcccaaattaattggtccagtgttgtccccg 783 Query: 484 ttcatnagcttcataagaccattgaccatatcagcaacgtagcanaagctcctagtctgt 543 ||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||| Sbjct: 782 ttcatcagcttaataagaccattaaccatgtcagcaacatagcagaagctcctagtttgt 723 Query: 544 gttcctggct 553 |||||||||| Sbjct: 722 gttcctggct 713
>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full insert sequence Length = 1811 Score = 295 bits (149), Expect = 8e-77 Identities = 267/310 (86%) Strand = Plus / Minus Query: 244 cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303 ||||||||||| || || ||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 1510 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 1451 Query: 304 cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363 || | | ||| |||||||||||||| ||||| |||||||| || ||||| ||||||||| Sbjct: 1450 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 1391 Query: 364 gtgttctnagtcatcgtcactgtcacctntgggttgatnaactccttnacgttntcagca 423 ||||||| |||||| || || || |||| ||||||||| |||||||| || || |||||| Sbjct: 1390 gtgttctcagtcattgtgacggtaacctctgggttgatcaactccttcacattctcagca 1331 Query: 424 agttccagcatggngaattcacctgggttcccaatgttaatgggtccagngttgtctcca 483 ||||||||||||| ||||||||||||||| || | ||||| ||||||| |||||| || Sbjct: 1330 agttccagcatggtgaattcacctgggtttcccaaattaattggtccagtgttgtccccg 1271 Query: 484 ttcatnagcttcataagaccattgaccatatcagcaacgtagcanaagctcctagtctgt 543 ||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||| Sbjct: 1270 ttcatcagcttaataagaccattaaccatgtcagcaacatagcagaagctcctagtttgt 1211 Query: 544 gttcctggct 553 |||||||||| Sbjct: 1210 gttcctggct 1201
>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full insert sequence Length = 1411 Score = 295 bits (149), Expect = 8e-77 Identities = 267/310 (86%) Strand = Plus / Minus Query: 244 cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303 ||||||||||| || || ||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 1121 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 1062 Query: 304 cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363 || | | ||| |||||||||||||| ||||| |||||||| || ||||| ||||||||| Sbjct: 1061 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 1002 Query: 364 gtgttctnagtcatcgtcactgtcacctntgggttgatnaactccttnacgttntcagca 423 ||||||| |||||| || || || |||| ||||||||| |||||||| || || |||||| Sbjct: 1001 gtgttctcagtcattgtgacggtaacctctgggttgatcaactccttcacattctcagca 942 Query: 424 agttccagcatggngaattcacctgggttcccaatgttaatgggtccagngttgtctcca 483 ||||||||||||| ||||||||||||||| || | ||||| ||||||| |||||| || Sbjct: 941 agttccagcatggtgaattcacctgggtttcccaaattaattggtccagtgttgtccccg 882 Query: 484 ttcatnagcttcataagaccattgaccatatcagcaacgtagcanaagctcctagtctgt 543 ||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||| Sbjct: 881 ttcatcagcttaataagaccattaaccatgtcagcaacatagcagaagctcctagtttgt 822 Query: 544 gttcctggct 553 |||||||||| Sbjct: 821 gttcctggct 812
>gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence Length = 958 Score = 283 bits (143), Expect = 3e-73 Identities = 264/308 (85%) Strand = Plus / Minus Query: 245 gctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctccc 304 |||||||||| || ||||||||||||||||||||||| | |||| || |||||||||| Sbjct: 787 gctcccggaaatcatcctccatgagcaccaagccgtcccccaggaagattttgggctccc 728 Query: 305 agtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcaggag 364 | | | ||| ||||| |||||||||| || |||||||| || || ||||||||||||| Sbjct: 727 atcccaaaacttccttcccctttgtgatatccggcttcctctgacgggggtcatcaggag 668 Query: 365 tgttctnagtcatcgtcactgtcacctntgggttgatnaactccttnacgttntcagcaa 424 |||||| ||||| ||||||||||| | ||||||||| |||||||| || || ||||||| Sbjct: 667 tgttctcggtcattgtcactgtcacatctgggttgatcaactccttcacattctcagcaa 608 Query: 425 gttccagcatggngaattcacctgggttcccaatgttaatgggtccagngttgtctccat 484 |||||||||||| |||||||||||||||||| | |||||| ||||||| |||| ||||| Sbjct: 607 gttccagcatggtgaattcacctgggttccccaagttaatcggtccagtcttgtttccat 548 Query: 485 tcatnagcttcataagaccattgaccatatcagcaacgtagcanaagctcctagtctgtg 544 |||| ||||| |||||||||| |||||||| ||||| ||||| || ||||||||||||| Sbjct: 547 tcatcagcttaataagaccatcaaccatatcggcaacatagcagaaactcctagtctgtg 488 Query: 545 ttcctggc 552 |||||||| Sbjct: 487 ttcctggc 480 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 ttggaactcaaattccgtaacgaaa 127 |||||||||||||||||||| |||| Sbjct: 921 ttggaactcaaattccgtaatgaaa 897
>dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A03, full insert sequence Length = 472 Score = 151 bits (76), Expect = 3e-33 Identities = 143/167 (85%) Strand = Plus / Minus Query: 244 cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303 ||||||||||| || || ||||||||||||||||| ||||| || |||| | |||||||| Sbjct: 175 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcctgggctcc 116 Query: 304 cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363 || | | |||||||||||||||||| ||||| |||||||| || ||||| ||||||||| Sbjct: 115 caccccaaaacctcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 56 Query: 364 gtgttctnagtcatcgtcactgtcacctntgggttgatnaactcctt 410 ||||||| |||||| || || || |||| ||||||||| |||||||| Sbjct: 55 gtgttctcagtcattgtgacggtaacctctgggttgatcaactcctt 9
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 143 bits (72), Expect = 7e-31 Identities = 139/163 (85%) Strand = Plus / Minus Query: 244 cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303 ||||||||||| || || ||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 9412260 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 9412201 Query: 304 cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363 || | | ||| |||||||||||||| ||||| |||||||| || ||||| ||||||||| Sbjct: 9412200 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 9412141 Query: 364 gtgttctnagtcatcgtcactgtcacctntgggttgatnaact 406 ||||||| |||||| || || || |||| ||||||||| |||| Sbjct: 9412140 gtgttctcagtcattgtgacggtaacctctgggttgatcaact 9412098 Score = 61.9 bits (31), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 508 accatatcagcaacgtagcanaagctcctagtctgtgttcctggct 553 ||||| |||||||| ||||| ||||||||||| ||||||||||||| Sbjct: 9411692 accatgtcagcaacatagcagaagctcctagtttgtgttcctggct 9411647 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/43 (90%) Strand = Plus / Minus Query: 405 ctccttnacgttntcagcaagttccagcatggngaattcacct 447 |||||| || || ||||||||||||||||||| |||||||||| Sbjct: 9412015 ctccttcacattctcagcaagttccagcatggtgaattcacct 9411973 Score = 50.1 bits (25), Expect = 0.008 Identities = 41/47 (87%) Strand = Plus / Minus Query: 460 ttaatgggtccagngttgtctccattcatnagcttcataagaccatt 506 ||||| ||||||| |||||| || ||||| ||||| ||||||||||| Sbjct: 9411835 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 9411789
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 143 bits (72), Expect = 7e-31 Identities = 139/163 (85%) Strand = Plus / Minus Query: 244 cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303 ||||||||||| || || ||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 109660 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 109601 Query: 304 cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363 || | | ||| |||||||||||||| ||||| |||||||| || ||||| ||||||||| Sbjct: 109600 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 109541 Query: 364 gtgttctnagtcatcgtcactgtcacctntgggttgatnaact 406 ||||||| |||||| || || || |||| ||||||||| |||| Sbjct: 109540 gtgttctcagtcattgtgacggtaacctctgggttgatcaact 109498 Score = 61.9 bits (31), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 508 accatatcagcaacgtagcanaagctcctagtctgtgttcctggct 553 ||||| |||||||| ||||| ||||||||||| ||||||||||||| Sbjct: 109092 accatgtcagcaacatagcagaagctcctagtttgtgttcctggct 109047 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/43 (90%) Strand = Plus / Minus Query: 405 ctccttnacgttntcagcaagttccagcatggngaattcacct 447 |||||| || || ||||||||||||||||||| |||||||||| Sbjct: 109415 ctccttcacattctcagcaagttccagcatggtgaattcacct 109373 Score = 50.1 bits (25), Expect = 0.008 Identities = 41/47 (87%) Strand = Plus / Minus Query: 460 ttaatgggtccagngttgtctccattcatnagcttcataagaccatt 506 ||||| ||||||| |||||| || ||||| ||||| ||||||||||| Sbjct: 109235 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 109189
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 143 bits (72), Expect = 7e-31 Identities = 139/163 (85%) Strand = Plus / Minus Query: 244 cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 303 ||||||||||| || || ||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 9410381 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 9410322 Query: 304 cagtcaanaacctcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcagga 363 || | | ||| |||||||||||||| ||||| |||||||| || ||||| ||||||||| Sbjct: 9410321 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 9410262 Query: 364 gtgttctnagtcatcgtcactgtcacctntgggttgatnaact 406 ||||||| |||||| || || || |||| ||||||||| |||| Sbjct: 9410261 gtgttctcagtcattgtgacggtaacctctgggttgatcaact 9410219 Score = 61.9 bits (31), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 508 accatatcagcaacgtagcanaagctcctagtctgtgttcctggct 553 ||||| |||||||| ||||| ||||||||||| ||||||||||||| Sbjct: 9409813 accatgtcagcaacatagcagaagctcctagtttgtgttcctggct 9409768 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/43 (90%) Strand = Plus / Minus Query: 405 ctccttnacgttntcagcaagttccagcatggngaattcacct 447 |||||| || || ||||||||||||||||||| |||||||||| Sbjct: 9410136 ctccttcacattctcagcaagttccagcatggtgaattcacct 9410094 Score = 50.1 bits (25), Expect = 0.008 Identities = 41/47 (87%) Strand = Plus / Minus Query: 460 ttaatgggtccagngttgtctccattcatnagcttcataagaccatt 506 ||||| ||||||| |||||| || ||||| ||||| ||||||||||| Sbjct: 9409956 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 9409910
>gb|U82433.1|PAU82433 Prunus armeniaca thymidine diphospho-glucose 4-6-dehydratase homolog mRNA, partial cds Length = 1012 Score = 63.9 bits (32), Expect = 5e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 316 tcctttgcctttgtgatgtcaggcttcctntggcgagggtcatcaggagtgttct 370 ||||| || |||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct: 702 tccttcgcttttgtgatgtcaggcttcctctggcgaggatcatccggcgtgttct 648 Score = 50.1 bits (25), Expect = 0.008 Identities = 39/44 (88%) Strand = Plus / Minus Query: 439 aattcacctgggttcccaatgttaatgggtccagngttgtctcc 482 ||||||||||| || |||||||| || ||||||| ||||||||| Sbjct: 579 aattcacctggatttccaatgttgatcggtccagtgttgtctcc 536
>gb|AY922315.1| Populus tomentosa UDP-glucuronic acid decarboxylase 3 (UXS3) mRNA, complete cds Length = 1129 Score = 54.0 bits (27), Expect = 5e-04 Identities = 47/54 (87%) Strand = Plus / Minus Query: 317 cctttgcctttgtgatgtcaggcttcctntggcgagggtcatcaggagtgttct 370 ||||||||||||| |||||||| ||||| || || || ||||||||||| |||| Sbjct: 981 cctttgcctttgtaatgtcaggtttcctctgtcgtggatcatcaggagtattct 928
>gb|AY619950.1| Nicotiana tabacum UDP-glucuronate decarboxylase 1 mRNA, complete cds Length = 1279 Score = 54.0 bits (27), Expect = 5e-04 Identities = 70/86 (81%) Strand = Plus / Minus Query: 397 ttgatnaactccttnacgttntcagcaagttccagcatggngaattcacctgggttccca 456 ||||| | |||||| || || || || ||||| | ||| | |||||||||||| || ||| Sbjct: 886 ttgatgagctccttcacattctccgcgagttcaatcatcgtgaattcacctggatttcca 827 Query: 457 atgttaatgggtccagngttgtctcc 482 |||||||| ||||||| ||| ||||| Sbjct: 826 atgttaattggtccagtgttatctcc 801 Score = 46.1 bits (23), Expect = 0.12 Identities = 43/50 (86%) Strand = Plus / Minus Query: 319 tttgcctttgtgatgtcaggcttcctntggcgagggtcatcaggagtgtt 368 ||||||||||||||||| || || || || ||||| ||||| |||||||| Sbjct: 964 tttgcctttgtgatgtccggttttctctgccgaggatcatctggagtgtt 915
>emb|AJ275318.1|CAR275318 Cicer arietinum mRNA for dTDP-glucose 4-6-dehydratase Length = 1356 Score = 50.1 bits (25), Expect = 0.008 Identities = 36/40 (90%) Strand = Plus / Minus Query: 418 tcagcaagttccagcatggngaattcacctgggttcccaa 457 ||||||||||| ||||| | ||||||||||||||| |||| Sbjct: 900 tcagcaagttcaagcattgtgaattcacctgggtttccaa 861
>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence Length = 255062 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gcctttgtgatgtcaggcttc 342 ||||||||||||||||||||| Sbjct: 163613 gcctttgtgatgtcaggcttc 163593
>dbj|AB059568.1| Pisum sativum uxs1 mRNA for UDP-D-glucuronate carboxy-lyase, complete cds Length = 1406 Score = 42.1 bits (21), Expect = 1.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 418 tcagcaagttccagcatggngaattcacctgggttcccaa 457 ||||||||||| ||||| | ||||||||| ||||| |||| Sbjct: 960 tcagcaagttcaagcatagtgaattcacccgggtttccaa 921
>ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G62840 mRNA, complete cds Length = 1063 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gcctttgtgatgtcaggctt 341 |||||||||||||||||||| Sbjct: 966 gcctttgtgatgtcaggctt 985
>ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2); catalytic/ dTDP-glucose 4,6-dehydratase AT3G62830 (UXS2) mRNA, complete cds Length = 1338 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gcctttgtgatgtcaggctt 341 |||||||||||||||||||| Sbjct: 1193 gcctttgtgatgtcaggctt 1174
>gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, complete cds Length = 1338 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gcctttgtgatgtcaggctt 341 |||||||||||||||||||| Sbjct: 1193 gcctttgtgatgtcaggctt 1174
>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9 Length = 110257 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gcctttgtgatgtcaggctt 341 |||||||||||||||||||| Sbjct: 88182 gcctttgtgatgtcaggctt 88163
>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence Length = 167258 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 agcttcataagaccattgac 509 |||||||||||||||||||| Sbjct: 166392 agcttcataagaccattgac 166411
>gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds Length = 1663 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gcctttgtgatgtcaggctt 341 |||||||||||||||||||| Sbjct: 1346 gcctttgtgatgtcaggctt 1327
>gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, complete sequence Length = 169944 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 agcttcataagaccattgac 509 |||||||||||||||||||| Sbjct: 68254 agcttcataagaccattgac 68273
>gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds Length = 1701 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gcctttgtgatgtcaggctt 341 |||||||||||||||||||| Sbjct: 1346 gcctttgtgatgtcaggctt 1327
>emb|BX822583.1|CNS0A63N Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB50ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 451 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gcctttgtgatgtcaggctt 341 |||||||||||||||||||| Sbjct: 92 gcctttgtgatgtcaggctt 73
>emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL65ZB07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 923 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gcctttgtgatgtcaggctt 341 |||||||||||||||||||| Sbjct: 564 gcctttgtgatgtcaggctt 545
>gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS2) mRNA, complete cds Length = 1338 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gcctttgtgatgtcaggctt 341 |||||||||||||||||||| Sbjct: 1193 gcctttgtgatgtcaggctt 1174
>emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4-6-dehydratases Length = 1660 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gcctttgtgatgtcaggctt 341 |||||||||||||||||||| Sbjct: 1332 gcctttgtgatgtcaggctt 1313 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,050,346 Number of Sequences: 3902068 Number of extensions: 2050346 Number of successful extensions: 29796 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29720 Number of HSP's gapped (non-prelim): 75 length of query: 553 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 530 effective length of database: 17,143,297,704 effective search space: 9085947783120 effective search space used: 9085947783120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)