>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
complete sequence
Length = 147381
Score = 97.6 bits (49), Expect = 5e-17
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 363 tcaaacatgactggtcctaacgatggttccaccacaatgtctatgacaatcacctttcct 422
|||||||| |||||||||| || ||| | |||| || ||||||| || ||||| |||
Sbjct: 123007 tcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgaccttccct 122948
Query: 423 ccctcctcacgtgagggaatggcattcttacactgggttaggatcttcacacaatcatca 482
|||||||| ||||| |||||||| || | ||||| || | ||||||||| |||||||||
Sbjct: 122947 ccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgcaatcatca 122888
Query: 483 tcgctccagtggtgcaacacaagct 507
||||||||||||||||| |||||||
Sbjct: 122887 tcgctccagtggtgcaatacaagct 122863
Score = 89.7 bits (45), Expect = 1e-14
Identities = 148/181 (81%), Gaps = 1/181 (0%)
Strand = Plus / Minus
Query: 506 cttgagcatcaccgcctgagcctttgggacggtgtggaacaggtcaccgccgacatagtt 565
|||||||||||| || |||||| ||| ||||||||||||| |||||| | ||||||||
Sbjct: 119697 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 119638
Query: 566 gactataccgtcagctgaagttttgtcgatcaccttggggagatccagcacggtgcactt 625
|| | ||| ||| | | ||||||||||||||||| || |||||||| ||||||||
Sbjct: 119637 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 119578
Query: 626 gatgtgcgggtgggcccttggtgatggccctcgccgtggttccatcgccaccgcagcagt 685
|| || |||| || |||||| ||||||||||||||| || || ||||| ||||||||||
Sbjct: 119577 gacatgagggtagg-ccttggcgatggccctcgccgtcgtgccgtcgccgccgcagcagt 119519
Query: 686 c 686
|
Sbjct: 119518 c 119518
Score = 67.9 bits (34), Expect = 5e-08
Identities = 141/174 (81%), Gaps = 2/174 (1%)
Strand = Plus / Minus
Query: 335 catgagtatgtccatca-gagtctgcgcctcaaacatgactggtcctaacgatggttcca 393
|||||| |||||||||| ||| |||||| || ||||| || || || || |||||||| |
Sbjct: 64349 catgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttcaa 64291
Query: 394 ccacaatgtctatgacaatcacctttcctccctcctcacgtgagggaatggcattcttac 453
||| || ||||||||||||| ||| || ||||||| ||||| ||||| || || || |
Sbjct: 64290 ccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagcctttttgc 64231
Query: 454 actgggttaggatcttcacacaatcatcatcgctccagtggtgcaacacaagct 507
|||| | |||||||||||| || ||||| |||||| |||| |||| |||||||
Sbjct: 64230 actgagctaggatcttcacgcagtcatcgtcgctcaagtgatgcagaacaagct 64177
Score = 56.0 bits (28), Expect = 2e-04
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 609 tccagcacggtgcacttgatgtgcgggtgggcccttggtgatggccctcgccgtgg 664
|||||||| ||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 63895 tccagcaccgtgcacttgatgtgcgggtacg-ccttgacgatggccctcgccgtgg 63841
Score = 44.1 bits (22), Expect = 0.65
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 462 aggatcttcacacaatcatcatcgctccagtggtgcaacaca 503
||||| |||||||| || ||||||||||||||| |||||||
Sbjct: 128530 aggattttcacacagtcgtcatcgctccagtggctcaacaca 128571
Score = 42.1 bits (21), Expect = 2.6
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 592 cgatcaccttggggagatccagcacggtgcacttgat 628
||||||||| || || ||||||||||||||||||||
Sbjct: 130810 cgatcacctgaggaaggtccagcacggtgcacttgat 130846
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
Length = 128418
Score = 97.6 bits (49), Expect = 5e-17
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 363 tcaaacatgactggtcctaacgatggttccaccacaatgtctatgacaatcacctttcct 422
|||||||| |||||||||| || ||| | |||| || ||||||| || ||||| |||
Sbjct: 8756 tcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgaccttccct 8697
Query: 423 ccctcctcacgtgagggaatggcattcttacactgggttaggatcttcacacaatcatca 482
|||||||| ||||| |||||||| || | ||||| || | ||||||||| |||||||||
Sbjct: 8696 ccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgcaatcatca 8637
Query: 483 tcgctccagtggtgcaacacaagct 507
||||||||||||||||| |||||||
Sbjct: 8636 tcgctccagtggtgcaatacaagct 8612
Score = 89.7 bits (45), Expect = 1e-14
Identities = 148/181 (81%), Gaps = 1/181 (0%)
Strand = Plus / Minus
Query: 506 cttgagcatcaccgcctgagcctttgggacggtgtggaacaggtcaccgccgacatagtt 565
|||||||||||| || |||||| ||| ||||||||||||| |||||| | ||||||||
Sbjct: 5446 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 5387
Query: 566 gactataccgtcagctgaagttttgtcgatcaccttggggagatccagcacggtgcactt 625
|| | ||| ||| | | ||||||||||||||||| || |||||||| ||||||||
Sbjct: 5386 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 5327
Query: 626 gatgtgcgggtgggcccttggtgatggccctcgccgtggttccatcgccaccgcagcagt 685
|| || |||| || |||||| ||||||||||||||| || || ||||| ||||||||||
Sbjct: 5326 gacatgagggtagg-ccttggcgatggccctcgccgtcgtgccgtcgccgccgcagcagt 5268
Query: 686 c 686
|
Sbjct: 5267 c 5267
Score = 44.1 bits (22), Expect = 0.65
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 462 aggatcttcacacaatcatcatcgctccagtggtgcaacaca 503
||||| |||||||| || ||||||||||||||| |||||||
Sbjct: 14279 aggattttcacacagtcgtcatcgctccagtggctcaacaca 14320
Score = 42.1 bits (21), Expect = 2.6
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 592 cgatcaccttggggagatccagcacggtgcacttgat 628
||||||||| || || ||||||||||||||||||||
Sbjct: 16559 cgatcacctgaggaaggtccagcacggtgcacttgat 16595
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 97.6 bits (49), Expect = 5e-17
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 363 tcaaacatgactggtcctaacgatggttccaccacaatgtctatgacaatcacctttcct 422
|||||||| |||||||||| || ||| | |||| || ||||||| || ||||| |||
Sbjct: 11490781 tcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgaccttccct 11490840
Query: 423 ccctcctcacgtgagggaatggcattcttacactgggttaggatcttcacacaatcatca 482
|||||||| ||||| |||||||| || | ||||| || | ||||||||| |||||||||
Sbjct: 11490841 ccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgcaatcatca 11490900
Query: 483 tcgctccagtggtgcaacacaagct 507
||||||||||||||||| |||||||
Sbjct: 11490901 tcgctccagtggtgcaatacaagct 11490925
Score = 89.7 bits (45), Expect = 1e-14
Identities = 148/181 (81%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 506 cttgagcatcaccgcctgagcctttgggacggtgtggaacaggtcaccgccgacatagtt 565
|||||||||||| || |||||| ||| ||||||||||||| |||||| | ||||||||
Sbjct: 11494091 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 11494150
Query: 566 gactataccgtcagctgaagttttgtcgatcaccttggggagatccagcacggtgcactt 625
|| | ||| ||| | | ||||||||||||||||| || |||||||| ||||||||
Sbjct: 11494151 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 11494210
Query: 626 gatgtgcgggtgggcccttggtgatggccctcgccgtggttccatcgccaccgcagcagt 685
|| || |||| || |||||| ||||||||||||||| || || ||||| ||||||||||
Sbjct: 11494211 gacatgagggtagg-ccttggcgatggccctcgccgtcgtgccgtcgccgccgcagcagt 11494269
Query: 686 c 686
|
Sbjct: 11494270 c 11494270
Score = 79.8 bits (40), Expect = 1e-11
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 399 atgtctatgacaatcacctttcctccctcctcacgtgagggaatggcattcttacactgg 458
||||||||||| |||||||| |||||||||| ||||| || ||||| ||||| ||||||
Sbjct: 7137718 atgtctatgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgg 7137777
Query: 459 gttaggatcttcacacaatcatcatcgctcca 490
| ||||||||||| || || |||||||||||
Sbjct: 7137778 gacaggatcttcacgcagtcgtcatcgctcca 7137809
Score = 71.9 bits (36), Expect = 3e-09
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 588 ttgtcgatcaccttggggagatccagcacggtgcacttgatgtgcggg 635
|||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 7138292 ttgtcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcggg 7138339
Score = 67.9 bits (34), Expect = 5e-08
Identities = 141/174 (81%), Gaps = 2/174 (1%)
Strand = Plus / Plus
Query: 335 catgagtatgtccatca-gagtctgcgcctcaaacatgactggtcctaacgatggttcca 393
|||||| |||||||||| ||| |||||| || ||||| || || || || |||||||| |
Sbjct: 11549439 catgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttcaa 11549497
Query: 394 ccacaatgtctatgacaatcacctttcctccctcctcacgtgagggaatggcattcttac 453
||| || ||||||||||||| ||| || ||||||| ||||| ||||| || || || |
Sbjct: 11549498 ccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagcctttttgc 11549557
Query: 454 actgggttaggatcttcacacaatcatcatcgctccagtggtgcaacacaagct 507
|||| | |||||||||||| || ||||| |||||| |||| |||| |||||||
Sbjct: 11549558 actgagctaggatcttcacgcagtcatcgtcgctcaagtgatgcagaacaagct 11549611
Score = 56.0 bits (28), Expect = 2e-04
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 609 tccagcacggtgcacttgatgtgcgggtgggcccttggtgatggccctcgccgtgg 664
|||||||| ||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 11549893 tccagcaccgtgcacttgatgtgcgggtacg-ccttgacgatggccctcgccgtgg 11549947
Score = 52.0 bits (26), Expect = 0.003
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 438 ggaatggcattcttacactgggttaggatcttcacacaatcatcatcgctccagtggtgc 497
||||| || |||||||| || ||||| || ||||||||||| || || |||||||||||
Sbjct: 11329823 ggaatagctttcttacattgagttagtattttcacacaatcctcgtcactccagtggtga 11329882
Query: 498 aacacaagct 507
| ||||||||
Sbjct: 11329883 agcacaagct 11329892
Score = 46.1 bits (23), Expect = 0.17
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 461 taggatcttcacacaatcatcatcgctccagtggtgcaacacaagct 507
|||||||||||||||||| || || |||||||||| | ||||||||
Sbjct: 11354137 taggatcttcacacaatcctcgtcattccagtggtgaagcacaagct 11354183
Score = 44.1 bits (22), Expect = 0.65
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 602 ggggagatccagcacggtgcacttgatgtgcggg 635
|||||| |||| ||||||||||||||||| ||||
Sbjct: 19030478 ggggaggtccatcacggtgcacttgatgtccggg 19030511
Score = 44.1 bits (22), Expect = 0.65
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 462 aggatcttcacacaatcatcatcgctccagtggtgcaacaca 503
||||| |||||||| || ||||||||||||||| |||||||
Sbjct: 11485258 aggattttcacacagtcgtcatcgctccagtggctcaacaca 11485217
Score = 42.1 bits (21), Expect = 2.6
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 592 cgatcaccttggggagatccagcacggtgcacttgat 628
||||||||| || || ||||||||||||||||||||
Sbjct: 11482978 cgatcacctgaggaaggtccagcacggtgcacttgat 11482942
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 97.6 bits (49), Expect = 5e-17
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 363 tcaaacatgactggtcctaacgatggttccaccacaatgtctatgacaatcacctttcct 422
|||||||| |||||||||| || ||| | |||| || ||||||| || ||||| |||
Sbjct: 11569970 tcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgaccttccct 11570029
Query: 423 ccctcctcacgtgagggaatggcattcttacactgggttaggatcttcacacaatcatca 482
|||||||| ||||| |||||||| || | ||||| || | ||||||||| |||||||||
Sbjct: 11570030 ccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgcaatcatca 11570089
Query: 483 tcgctccagtggtgcaacacaagct 507
||||||||||||||||| |||||||
Sbjct: 11570090 tcgctccagtggtgcaatacaagct 11570114
Score = 89.7 bits (45), Expect = 1e-14
Identities = 148/181 (81%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 506 cttgagcatcaccgcctgagcctttgggacggtgtggaacaggtcaccgccgacatagtt 565
|||||||||||| || |||||| ||| ||||||||||||| |||||| | ||||||||
Sbjct: 11573280 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 11573339
Query: 566 gactataccgtcagctgaagttttgtcgatcaccttggggagatccagcacggtgcactt 625
|| | ||| ||| | | ||||||||||||||||| || |||||||| ||||||||
Sbjct: 11573340 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 11573399
Query: 626 gatgtgcgggtgggcccttggtgatggccctcgccgtggttccatcgccaccgcagcagt 685
|| || |||| || |||||| ||||||||||||||| || || ||||| ||||||||||
Sbjct: 11573400 gacatgagggtagg-ccttggcgatggccctcgccgtcgtgccgtcgccgccgcagcagt 11573458
Query: 686 c 686
|
Sbjct: 11573459 c 11573459
Score = 79.8 bits (40), Expect = 1e-11
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 399 atgtctatgacaatcacctttcctccctcctcacgtgagggaatggcattcttacactgg 458
||||||||||| |||||||| |||||||||| ||||| || ||||| ||||| ||||||
Sbjct: 7203689 atgtctatgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgg 7203748
Query: 459 gttaggatcttcacacaatcatcatcgctcca 490
| ||||||||||| || || |||||||||||
Sbjct: 7203749 gacaggatcttcacgcagtcgtcatcgctcca 7203780
Score = 71.9 bits (36), Expect = 3e-09
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 588 ttgtcgatcaccttggggagatccagcacggtgcacttgatgtgcggg 635
|||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 7204263 ttgtcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcggg 7204310
Score = 67.9 bits (34), Expect = 5e-08
Identities = 141/174 (81%), Gaps = 2/174 (1%)
Strand = Plus / Plus
Query: 335 catgagtatgtccatca-gagtctgcgcctcaaacatgactggtcctaacgatggttcca 393
|||||| |||||||||| ||| |||||| || ||||| || || || || |||||||| |
Sbjct: 11628628 catgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttcaa 11628686
Query: 394 ccacaatgtctatgacaatcacctttcctccctcctcacgtgagggaatggcattcttac 453
||| || ||||||||||||| ||| || ||||||| ||||| ||||| || || || |
Sbjct: 11628687 ccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagcctttttgc 11628746
Query: 454 actgggttaggatcttcacacaatcatcatcgctccagtggtgcaacacaagct 507
|||| | |||||||||||| || ||||| |||||| |||| |||| |||||||
Sbjct: 11628747 actgagctaggatcttcacgcagtcatcgtcgctcaagtgatgcagaacaagct 11628800
Score = 56.0 bits (28), Expect = 2e-04
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 609 tccagcacggtgcacttgatgtgcgggtgggcccttggtgatggccctcgccgtgg 664
|||||||| ||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 11629082 tccagcaccgtgcacttgatgtgcgggtacg-ccttgacgatggccctcgccgtgg 11629136
Score = 52.0 bits (26), Expect = 0.003
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 438 ggaatggcattcttacactgggttaggatcttcacacaatcatcatcgctccagtggtgc 497
||||| || |||||||| || ||||| || ||||||||||| || || |||||||||||
Sbjct: 11409012 ggaatagctttcttacattgagttagtattttcacacaatcctcgtcactccagtggtga 11409071
Query: 498 aacacaagct 507
| ||||||||
Sbjct: 11409072 agcacaagct 11409081
Score = 46.1 bits (23), Expect = 0.17
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 461 taggatcttcacacaatcatcatcgctccagtggtgcaacacaagct 507
|||||||||||||||||| || || |||||||||| | ||||||||
Sbjct: 11433326 taggatcttcacacaatcctcgtcattccagtggtgaagcacaagct 11433372
Score = 44.1 bits (22), Expect = 0.65
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 602 ggggagatccagcacggtgcacttgatgtgcggg 635
|||||| |||| ||||||||||||||||| ||||
Sbjct: 19189127 ggggaggtccatcacggtgcacttgatgtccggg 19189160
Score = 44.1 bits (22), Expect = 0.65
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 462 aggatcttcacacaatcatcatcgctccagtggtgcaacaca 503
||||| |||||||| || ||||||||||||||| |||||||
Sbjct: 11564447 aggattttcacacagtcgtcatcgctccagtggctcaacaca 11564406
Score = 42.1 bits (21), Expect = 2.6
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 592 cgatcaccttggggagatccagcacggtgcacttgat 628
||||||||| || || ||||||||||||||||||||
Sbjct: 11562167 cgatcacctgaggaaggtccagcacggtgcacttgat 11562131
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 42.1 bits (21), Expect = 2.6
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 606 agatccagcacggtgcacttgatgt 630
||||||||||| |||||||||||||
Sbjct: 1142758 agatccagcacagtgcacttgatgt 1142782
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,914,621
Number of Sequences: 3902068
Number of extensions: 5914621
Number of successful extensions: 107108
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106587
Number of HSP's gapped (non-prelim): 508
length of query: 744
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 721
effective length of database: 17,143,297,704
effective search space: 12360317644584
effective search space used: 12360317644584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)