| Clone Name | rbags37p10 |
|---|---|
| Clone Library Name | barley_pub |
>RL14_PEA (P55844) Probable 60 ribosomal protein L14 (Hydroxyproline-rich| glycoprotein HRGP1) Length = 133 Score = 146 bits (368), Expect(2) = 2e-43 Identities = 77/112 (68%), Positives = 85/112 (75%) Frame = -1 Query: 464 GRLVVIVDVVDQNRALVDAPDMIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAMEEADVK 285 GRLVVIVDV+DQ RALVDAPDM R +NFKRLSLT K LIKA+E ADVK Sbjct: 22 GRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVK 81 Query: 284 TKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKEVA 129 KW SSWG+KLIV+K RA+LNDFDRFK+MLAKIKR +RQELAKLKK A Sbjct: 82 NKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133 Score = 49.3 bits (116), Expect(2) = 2e-43 Identities = 21/22 (95%), Positives = 22/22 (100%) Frame = -3 Query: 528 MPFKRFVEIGRVALVNYGKDYG 463 MPFKRFVEIGRVAL+NYGKDYG Sbjct: 1 MPFKRFVEIGRVALINYGKDYG 22
>RL14_LUMRU (O46160) 60S ribosomal protein L14| Length = 152 Score = 90.5 bits (223), Expect(2) = 7e-22 Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 2/111 (1%) Frame = -1 Query: 464 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAMEEAD 291 G+LV IVDV+DQNRALVD P + R MNFK L LT + KA E+ + Sbjct: 22 GKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDE 81 Query: 290 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKK 138 + KWE S KK+ +++R +L DF+RFK+M AK R I+ E KL+K Sbjct: 82 ISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132 Score = 32.7 bits (73), Expect(2) = 7e-22 Identities = 15/22 (68%), Positives = 16/22 (72%) Frame = -3 Query: 528 MPFKRFVEIGRVALVNYGKDYG 463 M F+RFVEIGRVA YG D G Sbjct: 1 MSFRRFVEIGRVARAVYGPDQG 22
>RL14_RAT (Q63507) 60S ribosomal protein L14| Length = 213 Score = 90.9 bits (224), Expect(2) = 6e-21 Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 2/111 (1%) Frame = -1 Query: 464 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAMEEAD 291 G+LV IVDV+DQNRALVD P + R M FK + LT + + KA E+AD Sbjct: 21 GKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKAD 80 Query: 290 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKK 138 + TKW + W KK+ ++R+A + DFDRFKVM AK R I+ E+ KL++ Sbjct: 81 INTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 131 Score = 29.3 bits (64), Expect(2) = 6e-21 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = -3 Query: 522 FKRFVEIGRVALVNYGKDYG 463 F+RFVE+GRVA +++G G Sbjct: 2 FRRFVEVGRVAYISFGPHAG 21
>RL14_HUMAN (P50914) 60S ribosomal protein L14 (CAG-ISL 7)| Length = 212 Score = 90.5 bits (223), Expect(2) = 6e-21 Identities = 49/111 (44%), Positives = 68/111 (61%), Gaps = 2/111 (1%) Frame = -1 Query: 464 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAMEEAD 291 G+LV IVDV+DQNRALVD P + R M FK + LT + + +A ++AD Sbjct: 21 GKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKAD 80 Query: 290 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKK 138 + TKW + W KK+ ++R+A + DFDRFKVM AK R I+ E+ KL+K Sbjct: 81 INTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 131 Score = 29.6 bits (65), Expect(2) = 6e-21 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -3 Query: 522 FKRFVEIGRVALVNYGKDYG 463 F+RFVE+GRVA V++G G Sbjct: 2 FRRFVEVGRVAYVSFGPHAG 21
>RL14_MOUSE (Q9CR57) 60S ribosomal protein L14| Length = 216 Score = 90.9 bits (224), Expect(2) = 1e-20 Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 2/111 (1%) Frame = -1 Query: 464 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAMEEAD 291 G+LV IVDV+DQNRALVD P + R M FK + LT + + KA E+AD Sbjct: 21 GKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKAD 80 Query: 290 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKK 138 + TKW + W KK+ ++R+A + DFDRFKVM AK R I+ E+ KL++ Sbjct: 81 INTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 131 Score = 28.1 bits (61), Expect(2) = 1e-20 Identities = 10/20 (50%), Positives = 16/20 (80%) Frame = -3 Query: 522 FKRFVEIGRVALVNYGKDYG 463 F+R+VE+GRVA +++G G Sbjct: 2 FRRYVEVGRVAYISFGPHAG 21
>RL14_GRIJA (Q7XYA7) 60S ribosomal protein L14| Length = 133 Score = 84.0 bits (206), Expect(2) = 1e-19 Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 3/110 (2%) Frame = -1 Query: 461 RLVVIVDVVDQNRALVDAPD--MIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAM-EEAD 291 +LVVIVD++DQNR LVD+P + R +N KR++LT +K+ A Sbjct: 23 KLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVDDIARGAPVAEVKSKYTAAK 82 Query: 290 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLK 141 V + S WGKKL +++RA+L+DF RFKVM+A++K+ AI ELAKLK Sbjct: 83 VDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132 Score = 31.6 bits (70), Expect(2) = 1e-19 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = -3 Query: 528 MPFKRFVEIGRVALVNYGK 472 M F RFVE GRVALV+YG+ Sbjct: 1 MTFTRFVEAGRVALVSYGE 19
>RL14_SCHPO (O94238) 60S ribosomal protein L14| Length = 134 Score = 75.1 bits (183), Expect(2) = 8e-16 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Frame = -1 Query: 482 TTARTTGRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXKATLIK 309 T TG+L VIVD+VD RAL+D+P + R + + + LT + K Sbjct: 17 TKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAK 76 Query: 308 AMEEADVKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKK 138 + DV KW +S+W KKL +K R+ LNDFDRF VM K +R + +AK K Sbjct: 77 KWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133 Score = 27.7 bits (60), Expect(2) = 8e-16 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -3 Query: 522 FKRFVEIGRVALVNYGKDYG 463 FKR+VE+GRV LV G+ G Sbjct: 4 FKRYVEVGRVVLVTKGEYTG 23
>RL14_DROME (P55841) 60S ribosomal protein L14| Length = 166 Score = 74.7 bits (182), Expect(2) = 3e-15 Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Frame = -1 Query: 464 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAMEEAD 291 GRLV IVDV+DQNR LVD P + R + L LT + KA E+D Sbjct: 22 GRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWTESD 81 Query: 290 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKEVAA*NT 117 +K +W+ S W K +R+SLNDFDRFK+ AK +R + LKK A T Sbjct: 82 LKAQWKVSPWSVKAQNICKRSSLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKADGT 139 Score = 26.2 bits (56), Expect(2) = 3e-15 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -3 Query: 528 MPFKRFVEIGRVALVNYG 475 MPF+RFV+ GR+A + G Sbjct: 1 MPFERFVQTGRIAKASAG 18
>RL14_DROVI (Q95ZE8) 60S ribosomal protein L14| Length = 160 Score = 70.5 bits (171), Expect(2) = 5e-14 Identities = 44/118 (37%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Frame = -1 Query: 464 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAMEEAD 291 GRLV IVDV+DQNR LVD P + R + L LT + KA ++D Sbjct: 22 GRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWVDSD 81 Query: 290 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKEVAA*NT 117 +K +W+ S W K +R+ LNDFDRFK+ AK +R + LKK + T Sbjct: 82 LKAQWKVSPWSVKAQNICKRSQLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKSDGT 139 Score = 26.2 bits (56), Expect(2) = 5e-14 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -3 Query: 528 MPFKRFVEIGRVALVNYG 475 MPF+RFV+ GR+A + G Sbjct: 1 MPFERFVQTGRIAKASAG 18
>RL14B_YEAST (P38754) 60S ribosomal protein L14-B| Length = 138 Score = 72.4 bits (176), Expect(2) = 1e-13 Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 2/111 (1%) Frame = -1 Query: 473 RTTGRLVVIVDVVDQNRALVDAPD--MIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAME 300 ++ G+L IV+++DQ + L+D P + R +N ++ LT AT+ K Sbjct: 27 QSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWA 86 Query: 299 EADVKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAK 147 A V KW SSW KK+ ++RRA+L DF+RF+VM+ + ++ +++ LAK Sbjct: 87 AAGVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137 Score = 23.1 bits (48), Expect(2) = 1e-13 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -3 Query: 516 RFVEIGRVALVNYGKDYG 463 R VE+GRV L+ G+ G Sbjct: 13 RLVEVGRVVLIKKGQSAG 30
>RL14A_YEAST (P36105) 60S ribosomal protein L14-A| Length = 138 Score = 72.0 bits (175), Expect(2) = 1e-13 Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 2/111 (1%) Frame = -1 Query: 473 RTTGRLVVIVDVVDQNRALVDAPD--MIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAME 300 ++ G+L IV+++DQ + L+D P + R +N ++ LT AT+ K Sbjct: 27 QSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWA 86 Query: 299 EADVKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAK 147 A V KW SSW KK+ ++RRA+L DF+RF+VM+ + ++ +++ LAK Sbjct: 87 AAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137 Score = 23.1 bits (48), Expect(2) = 1e-13 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -3 Query: 516 RFVEIGRVALVNYGKDYG 463 R VE+GRV L+ G+ G Sbjct: 13 RLVEVGRVVLIKKGQSAG 30
>RL14_TRYCO (P55843) Probable 60S ribosomal protein L14 (23 kDa cell surface| protein homolog) Length = 184 Score = 41.2 bits (95), Expect = 0.002 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Frame = -1 Query: 461 RLVVIVDVVDQNRALVDAPD---MIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAMEEAD 291 R+ VIVD+VD NR LV+ P M R + K + L +AM A Sbjct: 23 RVGVIVDIVDANRVLVENPSDVKMWRHVQSLKNVEPLRLCVPISRNCSSKVLKEAMATAK 82 Query: 290 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKR 177 K+ N+ ++ +K A DF+R+++ +AK R Sbjct: 83 TLEKYANTKSAIRIAAKKAFAESTDFERYQLRVAKRSR 120
>RL14_TRYBB (P55842) Probable 60S ribosomal protein L14 (23 kDa cell surface| protein homolog) Length = 189 Score = 38.9 bits (89), Expect = 0.010 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%) Frame = -1 Query: 461 RLVVIVDVVDQNRALVDAP---DMIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAMEEAD 291 R+ VIVD+VD NR LV+ P M R N K + L +A+E Sbjct: 23 RVGVIVDIVDANRVLVENPCEQKMWRHVQNLKNVEPLKFCVSISRNCSTKALKEALESKK 82 Query: 290 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKR 177 V K+ + + +K A DF+R+++ +AK R Sbjct: 83 VLEKYAATKVRRPHRAKKAFAESTDFERYQLRVAKRSR 120
>RL14_LEIDO (Q25278) Probable 60S ribosomal protein L14 (23 kDa cell surface| protein) (LDP 23) Length = 175 Score = 38.5 bits (88), Expect = 0.013 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Frame = -1 Query: 461 RLVVIVDVVDQNRALVDAPD---MIRCQMNFKRLSLTXXXXXXXXXXXKATLIKAMEEAD 291 R+ VIVD+VD NR LV+ P+ M R N K + L A+ + Sbjct: 23 RVGVIVDIVDANRVLVENPEDAKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSK 82 Query: 290 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKR 177 K+ + ++ +K A+ DF+R+++ +A+ R Sbjct: 83 ALEKYAKTRTAARVEAKKACAASTDFERYQLRVARRSR 120
>RL14E_AERPE (Q9YDD7) 50S ribosomal protein L14e| Length = 100 Score = 34.7 bits (78), Expect = 0.19 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = -1 Query: 482 TTARTTGRLVVIVDVVDQNRALVDAPDMI----RCQMNFKRLSLTXXXXXXXXXXXKATL 315 T R GR VIVD++D+N LV P + R ++N + + + Sbjct: 14 TRGREAGRKCVIVDIIDENFVLVTGPKSLTGVRRRRVNIDHIEILDKKVDIQKGASDEEV 73 Query: 314 IKAMEEA 294 +KA+EEA Sbjct: 74 LKALEEA 80
>RL14E_METKA (Q8TX43) 50S ribosomal protein L14e| Length = 94 Score = 31.6 bits (70), Expect = 1.6 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = -1 Query: 482 TTARTTGRLVVIVDVVDQNRALVDAPDMI----RCQMNFKRLSLTXXXXXXXXXXXKATL 315 T R G+ V+VD+VD+N ++ P + R + N K L T + Sbjct: 14 TAGREAGKYCVVVDIVDENFVIITGPKDVTGVKRRRCNIKHLEPTPEKVDIDRGASDEEV 73 Query: 314 IKAMEEA 294 +A+EEA Sbjct: 74 KEALEEA 80
>JHD3B_DROME (Q9V6L0) Probable JmjC domain-containing histone demethylation| protein 3B (EC 1.14.11.-) Length = 452 Score = 29.6 bits (65), Expect = 6.1 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +3 Query: 174 TPLNLSQHDLEPVKVIQRCSSLLNNKLLAPGAVLPFGFHISFLHGLD 314 +P L QHD+ K+ Q ++ PFG+H F HG + Sbjct: 244 SPQILKQHDVPVSKITQEAGEIM--------ITFPFGYHAGFNHGFN 282
>RL14E_SULTO (Q975L7) 50S ribosomal protein L14e| Length = 96 Score = 29.6 bits (65), Expect = 6.1 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Frame = -1 Query: 482 TTARTTGRLVVIVDVVDQNRALVDAPDMI----RCQMNFKRLSLTXXXXXXXXXXXKATL 315 T R G+ VIVD++D+N LV P + R ++N L T + Sbjct: 13 TRGREAGKKCVIVDIIDENFVLVTGPKDVNKVKRRRVNILHLEPTDKKIDINKGASDDEV 72 Query: 314 IKAMEEA 294 K +EEA Sbjct: 73 KKKLEEA 79
>LNK_HUMAN (Q9UQQ2) Lymphocyte-specific adapter protein Lnk (Signal| transduction protein Lnk) (Lymphocyte adapter protein) Length = 575 Score = 29.6 bits (65), Expect = 6.1 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +2 Query: 260 PRSCSPIWFSHQLPPWP*SKLPFWG 334 P SC+ + F LP W LP WG Sbjct: 469 PGSCNTVLFPFSLPHWDSESLPHWG 493
>C71C1_MAIZE (Q43250) Cytochrome P450 71C1 (EC 1.14.-.-) (Benzoxazineless 4)| Length = 535 Score = 29.6 bits (65), Expect = 6.1 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +2 Query: 272 SPIWFSHQLPPWP*SKLPFWGY 337 SP W H+LPP P KLP G+ Sbjct: 47 SPKWKQHRLPPTPPGKLPIIGH 68
>RL14E_PYRAE (Q8ZYB4) 50S ribosomal protein L14e| Length = 103 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Frame = -1 Query: 473 RTTGRLVVIVDVVDQNRALVDAPDMI----RCQMNFKRLSLTXXXXXXXXXXXKATLIKA 306 R GR V+VD+VD+N ++ P I R ++N + T + KA Sbjct: 17 REAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDIKRGASDDEVAKA 76 Query: 305 MEEA 294 +E A Sbjct: 77 IEAA 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,179,163 Number of Sequences: 219361 Number of extensions: 1133220 Number of successful extensions: 3230 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3217 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)