ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37p07 |
|---|---|
| Clone Library Name | barley_pub |
>VPS29_MOUSE (Q9QZ88) Vacuolar protein sorting 29 (Vesicle protein sorting 29)| Length = 182 Score = 185 bits (470), Expect = 8e-47 Identities = 82/135 (60%), Positives = 111/135 (82%) Frame = -1 Query: 565 YLKSLCPDLHITRGEYDEDARYPETKTVTIGQFKLGLCHGHQVVPWGDLDSLAMLQRQLD 386 YLK+L D+HI RG++DE+ YPE K VT+GQFK+GL HGHQV+PWGD+ SLA+LQRQ D Sbjct: 48 YLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFD 107 Query: 385 VDILVTGHTHQFKAYKHEGGVVINPGSATGAHSSITYDVNPSFVLMDIDGLRVVVYVYEL 206 VDIL++GHTH+F+A++HE INPGSATGA++++ ++ PSFVLMDI VV YVY+L Sbjct: 108 VDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQL 167 Query: 205 IDGEVKVDKIDFKKT 161 I +VKV++I++KK+ Sbjct: 168 IGDDVKVERIEYKKS 182
>VPS29_HUMAN (Q9UBQ0) Vacuolar protein sorting 29 (Vesicle protein sorting 29)| (hVPS29) (PEP11) Length = 182 Score = 185 bits (469), Expect = 1e-46 Identities = 82/134 (61%), Positives = 110/134 (82%) Frame = -1 Query: 565 YLKSLCPDLHITRGEYDEDARYPETKTVTIGQFKLGLCHGHQVVPWGDLDSLAMLQRQLD 386 YLK+L D+HI RG++DE+ YPE K VT+GQFK+GL HGHQV+PWGD+ SLA+LQRQ D Sbjct: 48 YLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFD 107 Query: 385 VDILVTGHTHQFKAYKHEGGVVINPGSATGAHSSITYDVNPSFVLMDIDGLRVVVYVYEL 206 VDIL++GHTH+F+A++HE INPGSATGA++++ ++ PSFVLMDI VV YVY+L Sbjct: 108 VDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQL 167 Query: 205 IDGEVKVDKIDFKK 164 I +VKV++I++KK Sbjct: 168 IGDDVKVERIEYKK 181
>PEP11_YEAST (P38759) Protein PEP11| Length = 282 Score = 74.3 bits (181), Expect = 2e-13 Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 21/132 (15%) Frame = -1 Query: 592 TSASRKFTTYLKSLCPDLHITRGEYDEDARYPETKT------------------VTIGQF 467 ++ S F ++ + ++ I RGE+D + P TK + G Sbjct: 41 STKSYDFLKFVNQISNNITIVRGEFD-NGHLPSTKKDKASDNSRPMEEIPMNSIIRQGAL 99 Query: 466 KLGLCHGHQVVPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAHS 287 K+G C G+ VVP D SL L RQLDVDIL+ G TH +AY EG +NPGS TGA + Sbjct: 100 KIGCCSGYTVVPKNDPLSLLALARQLDVDILLWGGTHNVEAYTLEGKFFVNPGSCTGAFN 159 Query: 286 S---ITYDVNPS 260 + I +DV S Sbjct: 160 TDWPIVFDVEDS 171 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/42 (45%), Positives = 28/42 (66%) Frame = -1 Query: 289 SSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 164 S I +PSF L+DI G +Y+Y ++GEVKVDK+ ++K Sbjct: 240 SDINGSNSPSFCLLDIQGNTCTLYIYLYVNGEVKVDKVVYEK 281
>Y1774_METTH (O27802) Putative metallophosphoesterase MTH1774 (EC 3.1.4.-)| Length = 172 Score = 59.3 bits (142), Expect = 8e-09 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Frame = -1 Query: 601 HRETSASRKFTTYLKSLCPDLHITRGEYDED--ARYPETKTVTIGQFKLGLCHGHQVVPW 428 H S T L++L P + +G D P ++ I F++GL HG +V P Sbjct: 34 HAGDLTSPDILTELETLAP-VECVQGNMDRHYGIETPRSRLFEIESFRVGLIHG-EVYPR 91 Query: 427 GDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAHSSITYDVNPSFVLM 248 GD L L +L D+L++GHTHQ + E V++NPGS T + +PS +++ Sbjct: 92 GDTQQLRYLGLELGADVLISGHTHQPFIRELEDMVLLNPGSPT-----VPRLTDPSVMVL 146 Query: 247 DIDG 236 IDG Sbjct: 147 RIDG 150
>Y623_METJA (Q58040) Putative metallophosphoesterase MJ0623 (EC 3.1.4.-)| Length = 192 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/67 (35%), Positives = 38/67 (56%) Frame = -1 Query: 499 PETKTVTIGQFKLGLCHGHQVVPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVV 320 P + + I K+G+ HG V P GD L +L +++ VD+L++GHTH ++ Sbjct: 99 PRKEILEINDIKIGVIHGDVVYPRGDRLKLRLLGKEMGVDVLISGHTHTPFIDDCRDILL 158 Query: 319 INPGSAT 299 +NPGS T Sbjct: 159 LNPGSPT 165
>Y207_MYCGE (P47449) Putative metallophosphoesterase MG207 (EC 3.1.4.-)| Length = 163 Score = 34.7 bits (78), Expect = 0.22 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 11/88 (12%) Frame = -1 Query: 496 ETKTVTIGQFKLGLCHGHQ-----VVPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHE 332 E + +GQ L HGHQ + W L L + +Q D+L+ GH+H K Sbjct: 60 EIEIFQLGQINFVLMHGHQAPRDNLKKWYQL--LVLKAQQYPCDVLIFGHSHIEYTNKIN 117 Query: 331 GGVVINPGS------ATGAHSSITYDVN 266 +INPGS T S T+ VN Sbjct: 118 MIQLINPGSLQLPRNQTNTPSYCTFIVN 145
>YSNB_BACSU (P94559) Putative metallophosphoesterase ysnB (EC 3.1.4.-)| Length = 171 Score = 33.9 bits (76), Expect = 0.37 Identities = 20/77 (25%), Positives = 36/77 (46%) Frame = -1 Query: 535 ITRGEYDEDARYPETKTVTIGQFKLGLCHGHQVVPWGDLDSLAMLQRQLDVDILVTGHTH 356 + +G D + + +T G K+ + HGH L ++ +L D++ GH+H Sbjct: 52 VVKGNCDFAGDFKDELLLTAGSRKILVTHGHLHGIKQTLLNVYYRAEELGADVICFGHSH 111 Query: 355 QFKAYKHEGGVVINPGS 305 + G ++INPGS Sbjct: 112 IAGSEVLRGKLMINPGS 128
>YFCE_ECOLI (P67095) Phosphodiesterase yfcE (EC 3.1.4.-)| Length = 184 Score = 33.1 bits (74), Expect = 0.63 Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 9/147 (6%) Frame = -1 Query: 595 ETSASRKFTTYLKSLCPDLHITRGEYDEDA-----RYPET---KTVTIGQFKLGLCHGHQ 440 E A K L + + RG D + +P T + V + + +L L HGH Sbjct: 49 EGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHL 108 Query: 439 VVPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAHSSITYDVNP- 263 P ++L L + D+LV GHTH A + NPGS SI NP Sbjct: 109 FGP----ENLPALNQN---DVLVYGHTHLPVAEQRGEIFHFNPGSV-----SIPKGGNPA 156 Query: 262 SFVLMDIDGLRVVVYVYELIDGEVKVD 182 S+ ++D D L V+ + I +V ++ Sbjct: 157 SYGMLDNDVLSVIALNDQSIIAQVAIN 183
>YFCE_ECOL6 (P67096) Phosphodiesterase yfcE (EC 3.1.4.-)| Length = 184 Score = 33.1 bits (74), Expect = 0.63 Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 9/147 (6%) Frame = -1 Query: 595 ETSASRKFTTYLKSLCPDLHITRGEYDEDA-----RYPET---KTVTIGQFKLGLCHGHQ 440 E A K L + + RG D + +P T + V + + +L L HGH Sbjct: 49 EGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHL 108 Query: 439 VVPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAHSSITYDVNP- 263 P ++L L + D+LV GHTH A + NPGS SI NP Sbjct: 109 FGP----ENLPALNQN---DVLVYGHTHLPVAEQRGEIFHFNPGSV-----SIPKGGNPA 156 Query: 262 SFVLMDIDGLRVVVYVYELIDGEVKVD 182 S+ ++D D L V+ + I +V ++ Sbjct: 157 SYGMLDNDVLSVIALNDQSIIAQVAIN 183
>YFCE_ECO57 (P67097) Phosphodiesterase yfcE (EC 3.1.4.-)| Length = 184 Score = 33.1 bits (74), Expect = 0.63 Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 9/147 (6%) Frame = -1 Query: 595 ETSASRKFTTYLKSLCPDLHITRGEYDEDA-----RYPET---KTVTIGQFKLGLCHGHQ 440 E A K L + + RG D + +P T + V + + +L L HGH Sbjct: 49 EGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHL 108 Query: 439 VVPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAHSSITYDVNP- 263 P ++L L + D+LV GHTH A + NPGS SI NP Sbjct: 109 FGP----ENLPALNQN---DVLVYGHTHLPVAEQRGEIFHFNPGSV-----SIPKGGNPA 156 Query: 262 SFVLMDIDGLRVVVYVYELIDGEVKVD 182 S+ ++D D L V+ + I +V ++ Sbjct: 157 SYGMLDNDVLSVIALNDQSIIAQVAIN 183
>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2| precursor Length = 503 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/51 (39%), Positives = 25/51 (49%) Frame = -2 Query: 381 TSSSPGTPISSRPTSTRGVSSSTLAQPRAPTAASHMTSTRASCSWTLMASV 229 TSSSP T SS S+ +SST A + T+ S TST S S+ Sbjct: 208 TSSSPSTTSSSTSASSSSETSSTQATSSSTTSTSSSTSTATVTSTPSSTSI 258
>PCP_MYCTU (P0A5R4) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 222 Score = 31.6 bits (70), Expect = 1.8 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Frame = -3 Query: 485 SYYWPVQARAMPWPSGCSMGRPGLPSDASAAAG---CGHPRHRA--HPSVQGLQARGGCR 321 +Y+ V RAM +M + G+P+D S AAG C H + H + +GL R G Sbjct: 114 AYHATVPVRAMV----LAMRKAGVPADVSDAAGTFVCNHLMYGVLHHLAQKGLPVRAGWI 169 Query: 320 HQPWLSHGRPQQHHI 276 H P L H++ Sbjct: 170 HLPCLPSVAALDHNL 184
>PCP_MYCBO (P0A5R5) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 222 Score = 31.6 bits (70), Expect = 1.8 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Frame = -3 Query: 485 SYYWPVQARAMPWPSGCSMGRPGLPSDASAAAG---CGHPRHRA--HPSVQGLQARGGCR 321 +Y+ V RAM +M + G+P+D S AAG C H + H + +GL R G Sbjct: 114 AYHATVPVRAMV----LAMRKAGVPADVSDAAGTFVCNHLMYGVLHHLAQKGLPVRAGWI 169 Query: 320 HQPWLSHGRPQQHHI 276 H P L H++ Sbjct: 170 HLPCLPSVAALDHNL 184
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 31.2 bits (69), Expect = 2.4 Identities = 19/54 (35%), Positives = 21/54 (38%) Frame = -3 Query: 473 PVQARAMPWPSGCSMGRPGLPSDASAAAGCGHPRHRAHPSVQGLQARGGCRHQP 312 P AR P G S G PG P A AA G+P P +G G P Sbjct: 346 PQGARGSEGPQG-SRGEPGPPGPAGAAGPAGNPGADGQPGAKGATGAPGIAGAP 398
>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit 10| (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 940 Score = 31.2 bits (69), Expect = 2.4 Identities = 24/71 (33%), Positives = 24/71 (33%) Frame = -3 Query: 443 SGCSMGRPGLPSDASAAAGCGHPRHRAHPSVQGLQARGGCRHQPWLSHGRPQQHHI*RQP 264 SG S RP AG GH H G GG R HG P H P Sbjct: 808 SGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG--GSGGHRPHEGPGHGGPHGHRPHDVP 865 Query: 263 ELRAHGH*WPP 231 R H H PP Sbjct: 866 GHRGHDHRGPP 876
>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit 10| (MHC class I region proline-rich protein CAT53) Length = 940 Score = 31.2 bits (69), Expect = 2.4 Identities = 24/71 (33%), Positives = 24/71 (33%) Frame = -3 Query: 443 SGCSMGRPGLPSDASAAAGCGHPRHRAHPSVQGLQARGGCRHQPWLSHGRPQQHHI*RQP 264 SG S RP AG GH H G GG R HG P H P Sbjct: 809 SGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG--GSGGHRPHEGPGHGGPHGHRPHDVP 866 Query: 263 ELRAHGH*WPP 231 R H H PP Sbjct: 867 GHRGHDHRGPP 877
>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit 10| (Phosphatase 1 nuclear targeting subunit) (MHC class I region proline-rich protein CAT53) (FB19 protein) (PP1-binding protein of 114 kDa) (p99) Length = 940 Score = 31.2 bits (69), Expect = 2.4 Identities = 24/71 (33%), Positives = 24/71 (33%) Frame = -3 Query: 443 SGCSMGRPGLPSDASAAAGCGHPRHRAHPSVQGLQARGGCRHQPWLSHGRPQQHHI*RQP 264 SG S RP AG GH H G GG R HG P H P Sbjct: 808 SGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG--GSGGHRPHEGPGHGGPHGHRPHDVP 865 Query: 263 ELRAHGH*WPP 231 R H H PP Sbjct: 866 GHRGHDHRGPP 876
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 31.2 bits (69), Expect = 2.4 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = -2 Query: 381 TSSSPGTPISSRPTSTRGVSSSTLAQPRAPTAASHMTSTRASCSWTLMAS 232 ++SS T SS TST SSST P + + +S +TST +S + T +S Sbjct: 204 STSSSSTSTSSSSTSTS--SSSTSTSPSSTSTSSSLTSTSSSSTSTSQSS 251
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit 10| (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Frame = -3 Query: 440 GCSMGRPGLPSDASAAAGCGHPRHRAHPSVQG-LQARGGCRHQPWLSHGRPQQHHI*RQP 264 G MG P + G HR H G + A GG R HG P H P Sbjct: 791 GGGMGGGHRPHEGPGGGMGGGSGHRPHEGPGGGMGAGGGHRPHEGPGHGGPHGHRPHDVP 850 Query: 263 ELRAHGH*WPP 231 R H H PP Sbjct: 851 GHRGHDHRGPP 861
>NTDO_CAEEL (Q03614) Sodium-dependent dopamine transporter (DA transporter)| (DAT) Length = 615 Score = 31.2 bits (69), Expect = 2.4 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = -3 Query: 95 CAPTFQSSFVLFPVLVVPSCSIGKP 21 CA +F S FV+F VL SC GKP Sbjct: 347 CATSFLSGFVIFSVLGYMSCKSGKP 371
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Frame = -3 Query: 452 PWPSGCS--MGRPGLPSDASAAAGCGHPRHRAHPSVQGLQARGG 327 P P G S G PGLP + G GHP P +G + G Sbjct: 1130 PGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDG 1173
>P936_METJA (Q58346) Phosphodiesterase MJ0936 (EC 3.1.4.-)| Length = 166 Score = 30.8 bits (68), Expect = 3.1 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = -1 Query: 487 TVTIGQFKLGLCHGHQVVPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPG 308 +V I K + HGH L M + D+++ GHTH+ + + +VINPG Sbjct: 85 SVEIDDLKFFITHGHHQ------SVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPG 138 Query: 307 SATG 296 G Sbjct: 139 ECCG 142
>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein| pam/highwire/rpm-1) Length = 5233 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/64 (32%), Positives = 27/64 (42%) Frame = -3 Query: 422 PGLPSDASAAAGCGHPRHRAHPSVQGLQARGGCRHQPWLSHGRPQQHHI*RQPELRAHGH 243 PG + AS G HR++ QG + H P H QQHH +Q L+ H Sbjct: 3874 PGTTAAASVGGGNLSKFHRSYSMGQGWASLAQHNHPP--PHHPQQQHHQQQQMNLQLQQH 3931 Query: 242 *WPP 231 PP Sbjct: 3932 QAPP 3935
>RECF_SYNPX (Q7U4L8) DNA replication and repair protein recF| Length = 365 Score = 30.4 bits (67), Expect = 4.1 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 92 RKNKNKQDRISVMWKAPSAMHRGGLLEVDLVNLHL 196 R ++ QDR + W+AP A+ R GL + D + L L Sbjct: 43 RSHRCSQDRDLIQWEAPRALLRAGLDDGDQLELEL 77
>MDFI_MOUSE (P70331) MyoD family inhibitor (Myogenic repressor I-mf)| Length = 251 Score = 30.4 bits (67), Expect = 4.1 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 9/86 (10%) Frame = -3 Query: 446 PSGCS---MGRPGLPSDASAAAGCGHPRHR---AHPSV---QGLQARGGCRHQPWLSHGR 294 P+G S + PG A A G HR HPS+ G ++RG R + Sbjct: 100 PNGSSHDHLSEPGSAGHAGNGALGGSKAHRKLQTHPSLGSQAGRKSRGSARSASQV---- 155 Query: 293 PQQHHI*RQPELRAHGH*WPPCCCLR 216 P Q + P +R H P CCLR Sbjct: 156 PLQAQEGKAPAVRIHRQTASPTCCLR 181
>EXP24_ARATH (Q9FL76) Alpha-expansin 24 precursor (AtEXPA24) (At-EXP24) (AtEx24)| (Ath-ExpAlpha-1.19) Length = 312 Score = 30.4 bits (67), Expect = 4.1 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = -3 Query: 413 PSDASAAAGCGHPRHRAHPSVQGLQARGG-CRHQPWLSHGR 294 PS + + HP H AHPS L + GG H W HGR Sbjct: 55 PSHGAHPSHGAHPSHGAHPSHGALPSHGGQVPHSGW-GHGR 94
>AKR1_USTMA (Q4P6L3) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein AKR1) Length = 844 Score = 30.4 bits (67), Expect = 4.1 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -2 Query: 375 SSPGTPISSRPTSTRGVSSSTLAQPRAPTAASHMTSTRASCSW 247 ++PGTP+SS ++T+ +S ST+ P P +S SW Sbjct: 2 AAPGTPLSS--SATQAISVSTVDAPSDPLLSSQSAQLDGHSSW 42
>HXD13_MOUSE (P70217) Homeobox protein Hox-D13 (Hox-4.8)| Length = 339 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = -3 Query: 473 PVQARAMPWPSGCSMGRPGLPS--DASAAAGCGHPRHRAHPSVQGLQA---RGGCRHQPW 309 P +A+ + + G + +P D + G G PRH A+ S++G Q+ G Q + Sbjct: 180 PARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNSQVY 239 Query: 308 LSHGRPQQHH 279 + +PQ H Sbjct: 240 CAKDQPQGSH 249
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -2 Query: 381 TSSSPGTPI-SSRPTSTRGVSSSTLA-QPRAPTAASHMTSTRASCS 250 TSSSP T +S P+ST SSST A AP+ AS TS S S Sbjct: 60 TSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTSTS 105
>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)| Length = 1758 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = -3 Query: 428 GRPGLPSDASAAAGCGHPRHRAHPSVQGLQARGG 327 G+PG+P G G P P + GL+ GG Sbjct: 1346 GQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGG 1379
>SYV_TREPA (O83998) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 956 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 91 PPPSRALLFCFPY*LYPPAR*ENQSCVYI 5 P + ALL C PY +Y P+R + ++C +I Sbjct: 751 PSGAHALLMCAPYPVYVPSRVDARACAHI 779
>HXD13_HUMAN (P35453) Homeobox protein Hox-D13 (Hox-4I)| Length = 335 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = -3 Query: 473 PVQARAMPWPSGCSMGRPGLPS--DASAAAGCGHPRHRAHPSVQGLQA---RGGCRHQPW 309 P +A+ + + G + +P D + G G PRH A+ S++G Q+ G Q + Sbjct: 176 PARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNSQVY 235 Query: 308 LSHGRPQQHH 279 + +PQ H Sbjct: 236 CTKDQPQGSH 245
>HXD13_CARPS (Q5EU41) Homeobox protein Hox-D13| Length = 333 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = -3 Query: 473 PVQARAMPWPSGCSMGRPGLPS--DASAAAGCGHPRHRAHPSVQGLQA---RGGCRHQPW 309 P +A+ + + G + +P D + G G PRH A+ S++G Q+ G Q + Sbjct: 174 PARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNSQVY 233 Query: 308 LSHGRPQQHH 279 + +PQ H Sbjct: 234 CAKDQPQGSH 243
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -2 Query: 381 TSSSPGTPI-SSRPTSTRGVSSSTLA-QPRAPTAASHMTSTRASCS 250 TSSSP T +S P+ST SSST A AP+ AS TS S S Sbjct: 60 TSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTSTS 105
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.0 bits (66), Expect = 5.3 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Frame = -2 Query: 471 SSS*GYAMAIRLFHGATWTP*RCF---SGSWMWTSSSPGTPISSR--PTSTRGVSSSTLA 307 SSS G A+ ++ T TP SGS + SS PGT ++R T+T V++ ++A Sbjct: 4547 SSSPGTALTPPVWISTTTTPTTTTPTTSGSTVTPSSIPGTTHTARVLTTTTTTVATGSMA 4606 Query: 306 QPRAPTAASHMTSTRASCSWTLMAS 232 P + T S + + + T+ A+ Sbjct: 4607 TPSSSTQTSGTPPSLTTTATTITAT 4631
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/54 (33%), Positives = 20/54 (37%) Frame = -3 Query: 473 PVQARAMPWPSGCSMGRPGLPSDASAAAGCGHPRHRAHPSVQGLQARGGCRHQP 312 P AR P G G PG P A AA G+P P +G G P Sbjct: 346 PQGARGSEGPQGVR-GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP 398
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/54 (33%), Positives = 20/54 (37%) Frame = -3 Query: 473 PVQARAMPWPSGCSMGRPGLPSDASAAAGCGHPRHRAHPSVQGLQARGGCRHQP 312 P AR P G G PG P A AA G+P P +G G P Sbjct: 346 PQGARGSEGPQGVR-GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP 398
>SYN2_RAT (Q63537) Synapsin-2 (Synapsin II)| Length = 586 Score = 29.6 bits (65), Expect = 6.9 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Frame = -2 Query: 441 RLFHGATWTP*RCFSGSWMWTSSSPGTPISSRPTSTR---GVSSSTLAQPRAPTAA 283 RL G + P S S +SS+P P PTST+ SS++LA+P+AP AA Sbjct: 477 RLPSGPSLPPSSSSSSSSSSSSSAPQRP--GGPTSTQVNASSSSNSLAEPQAPQAA 530
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = -2 Query: 381 TSSSPGTPISSRPTSTRGVSSSTLAQPRAPTAASHMTSTRAS 256 TSS+P TP S+ TST SST + T+A T+ + S Sbjct: 673 TSSTPSTPSSTLSTSTVTEPSSTRSSDSTTTSAGSTTTLQES 714
>Y126_MYCPN (P75349) Putative metallophosphoesterase MG207 homolog (EC 3.1.4.-)| (C09_orf159) Length = 159 Score = 29.6 bits (65), Expect = 6.9 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = -1 Query: 457 LCHGHQVVPWGDLDS----LAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGS 305 L HGHQ P DL L + D+L+ GH+H +G VINPGS Sbjct: 73 LMHGHQA-PRHDLKQWYKMLVDQAKSYLCDVLIVGHSHIEHYETIDGIQVINPGS 126
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/54 (33%), Positives = 20/54 (37%) Frame = -3 Query: 473 PVQARAMPWPSGCSMGRPGLPSDASAAAGCGHPRHRAHPSVQGLQARGGCRHQP 312 P AR P G G PG P A AA G+P P +G G P Sbjct: 353 PQGARGSEGPQGVR-GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP 405
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -3 Query: 455 MPWPSGCSMGRPGLPSDASAAAGCGHPRHRAHPSVQGLQARGGCRHQP 312 MP P G S G G+ ++ GH R P QGL + G +P Sbjct: 963 MPGPRG-SPGPQGIKGESGKPGASGHNGERGPPGPQGLPGQPGTAGEP 1009
>MUC1_XENLA (Q05049) Integumentary mucin C.1 (FIM-C.1) (Fragment)| Length = 662 Score = 29.3 bits (64), Expect = 9.1 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = -2 Query: 378 SSSPGTPISSRPTSTRGVSSSTLAQPRAPTAASHMTSTRASCSWTLMAS 232 +++P T + PT+ G + +T A P TAAS +T A+ + + A+ Sbjct: 88 ATAPTTAAAGAPTTATGKAPATAAAPVPTTAASKAPTTAAAATHSTAAA 136
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -3 Query: 455 MPWPSGCSMGRPGLPSDASAAAGCGHPRHRAHPSVQGLQARGGCRHQP 312 MP P G S G G+ ++ GH R P QGL + G +P Sbjct: 963 MPGPRG-SPGPQGIKGESGKPGASGHNGERGPPGPQGLPGQPGTAGEP 1009
>COL8_CAEEL (P18833) Cuticle collagen 8 precursor| Length = 282 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 6/57 (10%) Frame = -3 Query: 476 WPVQARAMPWPSGCSMGRPGLPSDASAAAGCGHPRHRAHPSVQGL------QARGGC 324 +P Q P GC G PG P + + GH P G+ GGC Sbjct: 79 YPEQCNCGPKSEGCPAGPPGPPGEGGQSGEPGHDGDDGKPGAPGVIVAITHDIPGGC 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,880,344 Number of Sequences: 219361 Number of extensions: 2005039 Number of successful extensions: 7303 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 6319 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7228 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
