Clone Information

BLAST Search Result

Clone Name	rbags38e13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK104588.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	337	3e-89
2	dbj\|AK104732.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	337	3e-89
3	dbj\|AK101795.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	337	3e-89
4	dbj\|AK071912.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	337	3e-89
5	ref\|XM_472247.1\| Oryza sativa (japonica cultivar-group), predic...	333	4e-88
6	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	285	8e-74
7	emb\|AL662977.3\|OSJN00176 Oryza sativa genomic DNA, chromosome 4,...	285	8e-74
8	gb\|AY105248.1\| Zea mays PCO134665 mRNA sequence	240	5e-60
9	gb\|AY971683.1\| Cirsium arvense microsatellite CarvC128 sequence	46	0.14
10	ref\|XM_457300.1\| Debaryomyces hansenii CBS767 hypothetical prote...	42	2.1
11	emb\|CR382134.1\| Debaryomyces hansenii chromosome B of strain CBS...	42	2.1
12	emb\|AL669844.20\| Mouse DNA sequence from clone RP23-395O6 on chr...	42	2.1
13	emb\|AL669951.18\| Mouse DNA sequence from clone RP23-94F11 on chr...	42	2.1
14	dbj\|AP003707.4\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
15	gb\|AC011387.5\| Homo sapiens chromosome 5 clone CTB-168B7, comple...	42	2.1
16	dbj\|AK010033.1\| Mus musculus adult male tongue cDNA, RIKEN full-...	42	2.1
17	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
18	dbj\|AP006843.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
19	dbj\|AP006165.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
20	dbj\|AK105517.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
21	gb\|AC167241.2\| Mus musculus BAC clone RP24-560M14 from chromosom...	40	8.4
22	gb\|AC105958.11\| Mus musculus chromosome 9, clone RP24-325P4, com...	40	8.4
23	gb\|AE014306.1\| Homo sapiens chromosome 13q34 schizophrenia regio...	40	8.4
24	emb\|CR626886.6\| Zebrafish DNA sequence from clone CH211-255I3 in...	40	8.4
25	ref\|XM_763655.1\| Giardia lamblia ATCC 50803 hypothetical protein...	40	8.4
26	emb\|AL590240.5\| Human DNA sequence from clone RP11-266I3 on chro...	40	8.4
27	emb\|AL445226.9\| Human DNA sequence from clone RP11-261F2 on chro...	40	8.4
28	emb\|AL138701.16\| Human DNA sequence from clone RP11-406G20 on ch...	40	8.4
29	emb\|AL031286.2\|HS681J21 Human DNA sequence from clone RP4-681J21...	40	8.4
30	gb\|AF322012.1\|AF322012S1 Bradyrhizobium japonicum symbiotic gene...	40	8.4
31	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	8.4
32	gb\|AY785435.1\| Uncultured bacterium clone HZ04 genomic sequence	40	8.4
33	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	40	8.4
34	gb\|AY111046.1\| Zea mays CL31773_1 mRNA sequence	40	8.4
35	gb\|AC130537.4\| Mus musculus BAC clone RP23-412D3 from 8, complet...	40	8.4
36	gb\|AC073435.26\| Mus musculus strain C57BL/6J chromosome 9 clone ...	40	8.4
37	dbj\|AP005329.3\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	40	8.4
38	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	40	8.4
39	gb\|AC170884.3\| Mus musculus BAC clone RP24-111L17 from chromosom...	40	8.4

>dbj|AK104588.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G07, full
            insert sequence
          Length = 1239

 Score =  337 bits (170), Expect = 3e-89
 Identities = 319/369 (86%)
 Strand = Plus / Minus

                                                                        
Query: 251  tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 310
            |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 1034 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 975

                                                                        
Query: 311  tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 370
            || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 974  tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 915

                                                                        
Query: 371  tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 430
            | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 914  ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 855

                                                                        
Query: 431  atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 490
            || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 854  atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 795

                                                                        
Query: 491  tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 550
            |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 794  tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 735

                                                                        
Query: 551  ctgtattgnttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatg 610
            ||||| |  |||||||| ||||||||| | ||||||||||| |||||||||||||| || 
Sbjct: 734  ctgtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgata 675

                     
Query: 611  ttaccaatt 619
            || ||||||
Sbjct: 674  ttgccaatt 666

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>dbj|AK104732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C08, full
            insert sequence
          Length = 1239

 Score =  337 bits (170), Expect = 3e-89
 Identities = 319/369 (86%)
 Strand = Plus / Minus

                                                                        
Query: 251  tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 310
            |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 1034 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 975

                                                                        
Query: 311  tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 370
            || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 974  tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 915

                                                                        
Query: 371  tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 430
            | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 914  ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 855

                                                                        
Query: 431  atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 490
            || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 854  atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 795

                                                                        
Query: 491  tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 550
            |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 794  tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 735

                                                                        
Query: 551  ctgtattgnttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatg 610
            ||||| |  |||||||| ||||||||| | ||||||||||| |||||||||||||| || 
Sbjct: 734  ctgtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgata 675

                     
Query: 611  ttaccaatt 619
            || ||||||
Sbjct: 674  ttgccaatt 666

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>dbj|AK101795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066B14, full
            insert sequence
          Length = 1692

 Score =  337 bits (170), Expect = 3e-89
 Identities = 319/369 (86%)
 Strand = Plus / Minus

                                                                        
Query: 251  tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 310
            |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 1481 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 1422

                                                                        
Query: 311  tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 370
            || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1421 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 1362

                                                                        
Query: 371  tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 430
            | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 1361 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 1302

                                                                        
Query: 431  atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 490
            || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 1301 atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 1242

                                                                        
Query: 491  tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 550
            |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 1241 tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 1182

                                                                        
Query: 551  ctgtattgnttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatg 610
            ||||| |  |||||||| ||||||||| | ||||||||||| |||||||||||||| || 
Sbjct: 1181 ctgtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgata 1122

                     
Query: 611  ttaccaatt 619
            || ||||||
Sbjct: 1121 ttgccaatt 1113

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>dbj|AK071912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063J16, full
            insert sequence
          Length = 1487

 Score =  337 bits (170), Expect = 3e-89
 Identities = 319/369 (86%)
 Strand = Plus / Minus

                                                                        
Query: 251  tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 310
            |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 1365 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 1306

                                                                        
Query: 311  tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 370
            || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1305 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 1246

                                                                        
Query: 371  tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 430
            | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 1245 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 1186

                                                                        
Query: 431  atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 490
            || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 1185 atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 1126

                                                                        
Query: 491  tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 550
            |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 1125 tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 1066

                                                                        
Query: 551  ctgtattgnttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatg 610
            ||||| |  |||||||| ||||||||| | ||||||||||| |||||||||||||| || 
Sbjct: 1065 ctgtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgata 1006

                     
Query: 611  ttaccaatt 619
            || ||||||
Sbjct: 1005 ttgccaatt 997

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>ref|XM_472247.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1278

 Score =  333 bits (168), Expect = 4e-88
 Identities = 317/367 (86%)
 Strand = Plus / Minus

                                                                        
Query: 253  tcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaatg 312
            |||||| || |||||||  || |||||||| || || |||||||||||||||||||||||
Sbjct: 1278 tcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaatg 1219

                                                                        
Query: 313  ccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtgtc 372
             |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| 
Sbjct: 1218 gcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtgtt 1159

                                                                        
Query: 373  ccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatgat 432
            ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 1158 ccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatgat 1099

                                                                        
Query: 433  atccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgcttc 492
             |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || ||
Sbjct: 1098 gtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcctc 1039

                                                                        
Query: 493  gtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtcct 552
            |||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||||
Sbjct: 1038 gtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtcct 979

                                                                        
Query: 553  gtattgnttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatgtt 612
            ||| |  |||||||| ||||||||| | ||||||||||| |||||||||||||| || ||
Sbjct: 978  gtaatctttgtatatgttgggggcagttagaagatattggacatctctgatgctgatatt 919

                   
Query: 613  accaatt 619
             ||||||
Sbjct: 918  gccaatt 912

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  285 bits (144), Expect = 8e-74
 Identities = 264/304 (86%)
 Strand = Plus / Plus

                                                                            
Query: 251      tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 310
                |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 18758009 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 18758068

                                                                            
Query: 311      tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 370
                || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 18758069 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 18758128

                                                                            
Query: 371      tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 430
                | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 18758129 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 18758188

                                                                            
Query: 431      atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 490
                || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 18758189 atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 18758248

                                                                            
Query: 491      tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 550
                |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 18758249 tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 18758308

                    
Query: 551      ctgt 554
                ||||
Sbjct: 18758309 ctgt 18758312



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 560      ttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatgttaccaatt 619
                |||||||| ||||||||| | ||||||||||| |||||||||||||| || || ||||||
Sbjct: 18758494 ttgtatatgttgggggcagttagaagatattggacatctctgatgctgatattgccaatt 18758553

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>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
              complete sequence
          Length = 160456

 Score =  285 bits (144), Expect = 8e-74
 Identities = 264/304 (86%)
 Strand = Plus / Plus

                                                                          
Query: 251    tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 310
              |||||||| || |||||||  || |||||||| || || |||||||||||||||||||||
Sbjct: 107172 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 107231

                                                                          
Query: 311    tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 370
              || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 107232 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 107291

                                                                          
Query: 371    tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 430
              | ||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||
Sbjct: 107292 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 107351

                                                                          
Query: 431    atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 490
              || |||||||   | || || ||| |||||||||| |||  |   |||| |||||| || 
Sbjct: 107352 atgtccttgacttcatcatcccttctgcatgtgatgacggagccgagcaacggcgaggcc 107411

                                                                          
Query: 491    tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 550
              |||||||||||||| || || ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 107412 tcgtgttgctcctgaaggtgttgccggaccgcggtaaggaaatccttggccgtgattgtc 107471

                  
Query: 551    ctgt 554
              ||||
Sbjct: 107472 ctgt 107475



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                          
Query: 560    ttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatgttaccaatt 619
              |||||||| ||||||||| | ||||||||||| |||||||||||||| || || ||||||
Sbjct: 107657 ttgtatatgttgggggcagttagaagatattggacatctctgatgctgatattgccaatt 107716

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>gb|AY105248.1| Zea mays PCO134665 mRNA sequence
          Length = 1817

 Score =  240 bits (121), Expect = 5e-60
 Identities = 306/368 (83%)
 Strand = Plus / Minus

                                                                        
Query: 251  tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 310
            ||||||||||| |||||||| || |||||||| || || || ||||||||||||||||||
Sbjct: 1530 tgtcatacggtgctgtttgcaggcaggggaacaacaccatcaaagaaatccccaaagtaa 1471

                                                                        
Query: 311  tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 370
            || |||||||| ||||||||||||||||||||||||||||  ||||| || |||||||||
Sbjct: 1470 tggcgtggctcatgcaccagcttggagattatgtccctcaaggtgatgactccctcggtg 1411

                                                                        
Query: 371  tcccccttgtcgtcgaccacgtagatcctgtggatcttggtcgagtccagcttcagtatg 430
            | ||| ||||| || || ||||||||||||||||||||    ||||||||||||||||||
Sbjct: 1410 ttccctttgtcatccacaacgtagatcctgtggatcttctcagagtccagcttcagtatg 1351

                                                                        
Query: 431  atatccttgatcacgtcgtctcttttgcatgtgatcacgtcgtgcagcagcggcgacgct 490
            || ||||||||    || ||  ||||||| ||||| || || ||||||| ||| || || 
Sbjct: 1350 atgtccttgattgtatcatcctttttgcaagtgatgacatcatgcagcaacggtgaggcc 1291

                                                                        
Query: 491  tcgtgttgctcctggagatggtgccggaccgcagtaaggaaatccttggctgagattgtc 550
            ||  | ||||||||||| ||||| || || ||| ||||||||||||| |  | ||||| |
Sbjct: 1290 tcacgctgctcctggaggtggtgtcgaacagcactaaggaaatcctttgtcgtgattgac 1231

                                                                        
Query: 551  ctgtattgnttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatg 610
            ||||  |  |||||||||||||| ||| | | |||||| || ||||||||||||||||| 
Sbjct: 1230 ctgtgctctttgtatatcttgggagcagttaaaagatactggacatctctgatgctaata 1171

                    
Query: 611  ttaccaat 618
            ||||||||
Sbjct: 1170 ttaccaat 1163

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>gb|AY971683.1| Cirsium arvense microsatellite CarvC128 sequence
          Length = 721

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 560 ttgtatatcttgggggcactcagaagatattgtacatctctgatgctaatgttaccaat 618
           ||||| |||| ||||||| | || ||| |||| | |||||||||||| |||||||||||
Sbjct: 267 ttgtaaatctcgggggcaattaggagaaattgaatatctctgatgcttatgttaccaat 209

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>ref|XM_457300.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B07920g)
           partial mRNA
          Length = 642

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 73  gcagaaaccgtcaacaagaaa 93
           |||||||||||||||||||||
Sbjct: 322 gcagaaaccgtcaacaagaaa 342

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>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces
              hansenii
          Length = 1349926

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 73     gcagaaaccgtcaacaagaaa 93
              |||||||||||||||||||||
Sbjct: 622023 gcagaaaccgtcaacaagaaa 622043

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>emb|AL669844.20| Mouse DNA sequence from clone RP23-395O6 on chromosome 11 Contains the 3'
              end of a novel gene, a novel gene, the Stk10 gene for
              serine/threonine kinase 10, the 5' end of the Fbxw1b gene
              for F-box and WD-40 domain protein 1B and two CpG islands,
              complete sequence
          Length = 221145

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 84     caacaagaaagaagagaggca 104
              |||||||||||||||||||||
Sbjct: 220557 caacaagaaagaagagaggca 220537

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>emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chromosome 11 Contains
            three novel genes, a ribosomal protein L9 (Rpl9)
            pseudogene, a transcription elongation factor A (SII) 3
            (Tcea3) pseudogene and the 3' end of the Fbxw1b gene for
            F-box and WD-40 domain protein 1B, complete sequence
          Length = 251085

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 84   caacaagaaagaagagaggca 104
            |||||||||||||||||||||
Sbjct: 1041 caacaagaaagaagagaggca 1021

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>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1485_B09
          Length = 66599

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 317   ggctcgtgcaccagcttggagattatgtc 345
             ||||||| ||||||||||| |||||||||
Sbjct: 31118 ggctcgtacaccagcttggcgattatgtc 31146

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>gb|AC011387.5| Homo sapiens chromosome 5 clone CTB-168B7, complete sequence
          Length = 164055

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     caacaagaaagaagagaggca 104
              |||||||||||||||||||||
Sbjct: 134711 caacaagaaagaagagaggca 134731

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>dbj|AK010033.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310065A07 product:unclassifiable, full
           insert sequence
          Length = 701

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 84  caacaagaaagaagagaggca 104
           |||||||||||||||||||||
Sbjct: 193 caacaagaaagaagagaggca 173

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 317      ggctcgtgcaccagcttggagattatgtc 345
                ||||||| ||||||||||| |||||||||
Sbjct: 40232166 ggctcgtacaccagcttggcgattatgtc 40232194

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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1793G04
          Length = 156714

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 317   ggctcgtgcaccagcttggagattatgtc 345
             ||||||| ||||||||||| |||||||||
Sbjct: 97944 ggctcgtacaccagcttggcgattatgtc 97972

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>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1425D05, complete sequence
          Length = 66450

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 317   ggctcgtgcaccagcttggagattatgtc 345
             ||||||| ||||||||||| |||||||||
Sbjct: 23516 ggctcgtacaccagcttggcgattatgtc 23544

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>dbj|AK105517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F06, full
            insert sequence
          Length = 1473

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 317  ggctcgtgcaccagcttggagattatgtc 345
            ||||||| ||||||||||| |||||||||
Sbjct: 1255 ggctcgtacaccagcttggcgattatgtc 1227

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>gb|AC167241.2| Mus musculus BAC clone RP24-560M14 from chromosome 17, complete sequence
          Length = 184079

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 524    gtaaggaaatccttggctgagatt 547
              ||||||||||||| ||||||||||
Sbjct: 110200 gtaaggaaatcctgggctgagatt 110177

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>gb|AC105958.11| Mus musculus chromosome 9, clone RP24-325P4, complete sequence
          Length = 195129

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     acaccttgaacgttagtctg 44
              ||||||||||||||||||||
Sbjct: 105106 acaccttgaacgttagtctg 105125

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>gb|AE014306.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 3 of
              11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    aatgtacattttcttacaga 239
              ||||||||||||||||||||
Sbjct: 196414 aatgtacattttcttacaga 196395

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>emb|CR626886.6| Zebrafish DNA sequence from clone CH211-255I3 in linkage group 16,
              complete sequence
          Length = 165396

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     aatgataaatgatggcagaa 78
              ||||||||||||||||||||
Sbjct: 132897 aatgataaatgatggcagaa 132878

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>ref|XM_763655.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_155_30673_36963)
            partial mRNA
          Length = 6291

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 226  cattttcttacagagtacagcgtt 249
            ||||||||| ||||||||||||||
Sbjct: 5448 cattttcttgcagagtacagcgtt 5471

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>emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chromosome X Contains a
              likely ortholog of mouse hepatoma-derived growth factor
              related protein 3 pseudogene (HDGFRP3), a novel protein
              similar to PAGE-5 protein (LOC203569), a novel protein
              similar to PAGE-5 protein (LOC139795), gene FLJ20434, a
              cytochrome c oxidase I (MTCO1) pseudogene, a G antigen,
              family D pseudogene and a CpG island, complete sequence
          Length = 130005

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    ataatgtacattttcttaca 237
              ||||||||||||||||||||
Sbjct: 124731 ataatgtacattttcttaca 124712

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>emb|AL445226.9| Human DNA sequence from clone RP11-261F2 on chromosome 13, complete
             sequence
          Length = 56239

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   aatgtacattttcttacaga 239
             ||||||||||||||||||||
Sbjct: 53298 aatgtacattttcttacaga 53279

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>emb|AL138701.16| Human DNA sequence from clone RP11-406G20 on chromosome 13, complete
              sequence
          Length = 173496

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     aacaatgataaatgatggcagaaa 79
              |||||||||||||| |||||||||
Sbjct: 151550 aacaatgataaatggtggcagaaa 151573

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>emb|AL031286.2|HS681J21 Human DNA sequence from clone RP4-681J21 on chromosome 1q23.2-24.3
             Contains the 5' end of a novel gene, the 5' end of the
             gene for expressed in hematopoietic cells (heart, liver)
             (HLL) and a CpG island, complete sequence
          Length = 68770

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   agataatgtacattttctta 235
             ||||||||||||||||||||
Sbjct: 18244 agataatgtacattttctta 18225

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>gb|AF322012.1|AF322012S1 Bradyrhizobium japonicum symbiotic gene region, part 1 of 2
          Length = 180000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 500    tcctggagatggtgccggaccgca 523
              |||||||||||||| |||||||||
Sbjct: 174068 tcctggagatggtggcggaccgca 174091

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 500     tcctggagatggtgccggaccgca 523
               |||||||||||||| |||||||||
Sbjct: 2052553 tcctggagatggtggcggaccgca 2052576

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>gb|AY785435.1| Uncultured bacterium clone HZ04 genomic sequence
          Length = 1433

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 470 tcgtgcagcagcggcgacgc 489
           ||||||||||||||||||||
Sbjct: 238 tcgtgcagcagcggcgacgc 257

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 463     gatcacgtcgtgcagcagcg 482
               ||||||||||||||||||||
Sbjct: 2337289 gatcacgtcgtgcagcagcg 2337308

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>gb|AY111046.1| Zea mays CL31773_1 mRNA sequence
          Length = 549

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 acgacgccgtcgaagaaatc 300
           ||||||||||||||||||||
Sbjct: 498 acgacgccgtcgaagaaatc 479

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>gb|AC130537.4| Mus musculus BAC clone RP23-412D3 from 8, complete sequence
          Length = 194088

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 593   acatctctgatgctaatgtt 612
             ||||||||||||||||||||
Sbjct: 83277 acatctctgatgctaatgtt 83258

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>gb|AC073435.26| Mus musculus strain C57BL/6J chromosome 9 clone rp23-383h20, complete
              sequence
          Length = 221953

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     acaccttgaacgttagtctg 44
              ||||||||||||||||||||
Sbjct: 212909 acaccttgaacgttagtctg 212890

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>dbj|AP005329.3| Homo sapiens genomic DNA, chromosome 18 clone:RP13-270P17, complete
             sequence
          Length = 178812

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   atgtccctcagtgtgatcac 360
             ||||||||||||||||||||
Sbjct: 56361 atgtccctcagtgtgatcac 56380

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 370     gtcccccttgtcgtcgacca 389
               ||||||||||||||||||||
Sbjct: 1956409 gtcccccttgtcgtcgacca 1956428

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>gb|AC170884.3| Mus musculus BAC clone RP24-111L17 from chromosome 17, complete
             sequence
          Length = 180189

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 524   gtaaggaaatccttggctgagatt 547
             ||||||||||||| ||||||||||
Sbjct: 43333 gtaaggaaatcctgggctgagatt 43310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,230,962
Number of Sequences: 3902068
Number of extensions: 5230962
Number of successful extensions: 98869
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98618
Number of HSP's gapped (non-prelim): 249
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result