ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags38d23 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 125 bits (314), Expect = 1e-28 Identities = 62/134 (46%), Positives = 78/134 (58%) Frame = -1 Query: 699 LPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWW 520 LPFSAI +ELYYIFA+VWG Y +ALTYFQL+ ED+ WW Sbjct: 473 LPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWW 532 Query: 519 WRSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAA 340 WRS L GSTG F+ RS+MSG +QT FFGY Y FFLMLG + F ++ Sbjct: 533 WRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSS 592 Query: 339 LFFVRHIYKSIKCE 298 L F+R+IY ++K + Sbjct: 593 LKFIRYIYVNLKMD 606
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 125 bits (314), Expect = 1e-28 Identities = 62/134 (46%), Positives = 78/134 (58%) Frame = -1 Query: 699 LPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWW 520 LPFSAI +ELYYIFA+VWG Y +ALTYFQL+ ED+ WW Sbjct: 473 LPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWW 532 Query: 519 WRSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAA 340 WRS L GSTG F+ RS+MSG +QT FFGY Y FFLMLG + F ++ Sbjct: 533 WRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSS 592 Query: 339 LFFVRHIYKSIKCE 298 L F+R+IY ++K + Sbjct: 593 LKFIRYIYVNLKMD 606
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 125 bits (314), Expect = 1e-28 Identities = 62/134 (46%), Positives = 78/134 (58%) Frame = -1 Query: 699 LPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWW 520 LPFSAI +ELYYIFA+VWG Y +ALTYFQL+ ED+ WW Sbjct: 473 LPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWW 532 Query: 519 WRSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAA 340 WRS L GSTG F+ RS+MSG +QT FFGY Y FFLMLG + F ++ Sbjct: 533 WRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSS 592 Query: 339 LFFVRHIYKSIKCE 298 L F+R+IY ++K + Sbjct: 593 LKFIRYIYVNLKMD 606
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 117 bits (293), Expect = 3e-26 Identities = 58/130 (44%), Positives = 74/130 (56%) Frame = -1 Query: 687 AIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWWRSF 508 AI +ELYYIFA+VWG Y +ALTYFQL+ ED+ WWWRS Sbjct: 460 AISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSV 519 Query: 507 LCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFV 328 L GSTG F+ RS+MSG +QT FFGY Y FFLMLG + F ++L F+ Sbjct: 520 LSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFI 579 Query: 327 RHIYKSIKCE 298 R+IY ++K + Sbjct: 580 RYIYVNLKMD 589
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 104 bits (259), Expect = 3e-22 Identities = 46/134 (34%), Positives = 74/134 (55%) Frame = -1 Query: 699 LPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWW 520 LPF A++IEL++IF+++W ++ Y + + YFQL AED+ WW Sbjct: 492 LPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWW 551 Query: 519 WRSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAA 340 WR+FL G + F+V + D+ F+ + +FGY A + +F+L+ G +GF AA Sbjct: 552 WRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAA 611 Query: 339 LFFVRHIYKSIKCE 298 FVR IY ++K + Sbjct: 612 YMFVRKIYAAVKID 625
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 99.4 bits (246), Expect = 9e-21 Identities = 49/134 (36%), Positives = 68/134 (50%) Frame = -1 Query: 699 LPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWW 520 LPF +I+IE+Y+IF S W ++IY + TYF L AED+ W Sbjct: 454 LPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQ 513 Query: 519 WRSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAA 340 W SFL ST +V + ++ M G QTSF+FGYMA A +M G +G+ Sbjct: 514 WTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGT 573 Query: 339 LFFVRHIYKSIKCE 298 FVR IY ++K + Sbjct: 574 SAFVRKIYTNVKID 587
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 99.4 bits (246), Expect = 9e-21 Identities = 49/134 (36%), Positives = 68/134 (50%) Frame = -1 Query: 699 LPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWW 520 LPF +I+IE+Y+IF S W ++IY + TYF L AED+ W Sbjct: 456 LPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQ 515 Query: 519 WRSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAA 340 W SFL ST +V + ++ M G QTSF+FGYMA A +M G +G+ Sbjct: 516 WTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGT 575 Query: 339 LFFVRHIYKSIKCE 298 FVR IY ++K + Sbjct: 576 SAFVRKIYTNVKID 589
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 90.5 bits (223), Expect = 4e-18 Identities = 43/134 (32%), Positives = 64/134 (47%) Frame = -1 Query: 699 LPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWW 520 LPF I+I+L++I S+W H++Y + L YF L AED+ W Sbjct: 530 LPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQ 589 Query: 519 WRSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAA 340 WRSFL G T + +++ ++G T +FGY + FFL G +GF A Sbjct: 590 WRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFAC 649 Query: 339 LFFVRHIYKSIKCE 298 +FV IY +K + Sbjct: 650 FWFVTKIYSVVKVD 663
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 90.5 bits (223), Expect = 4e-18 Identities = 43/134 (32%), Positives = 64/134 (47%) Frame = -1 Query: 699 LPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWW 520 LPF I+I+L++I S+W H++Y + L YF L AED+ W Sbjct: 530 LPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQ 589 Query: 519 WRSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAA 340 WRSFL G T + +++ ++G T +FGY + FFL G +GF A Sbjct: 590 WRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFAC 649 Query: 339 LFFVRHIYKSIKCE 298 +FV IY +K + Sbjct: 650 FWFVTKIYSVVKVD 663
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 90.5 bits (223), Expect = 4e-18 Identities = 43/134 (32%), Positives = 64/134 (47%) Frame = -1 Query: 699 LPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWW 520 LPF I+I+L++I S+W H++Y + L YF L AED+ W Sbjct: 530 LPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQ 589 Query: 519 WRSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAA 340 WRSFL G T + +++ ++G T +FGY + FFL G +GF A Sbjct: 590 WRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFAC 649 Query: 339 LFFVRHIYKSIKCE 298 +FV IY +K + Sbjct: 650 FWFVTKIYSVVKVD 663
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 90.5 bits (223), Expect = 4e-18 Identities = 43/134 (32%), Positives = 64/134 (47%) Frame = -1 Query: 699 LPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWW 520 LPF I+I+L++I S+W H++Y + L YF L AED+ W Sbjct: 529 LPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQ 588 Query: 519 WRSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAA 340 WRSFL G T + +++ ++G T +FGY + FFL G +GF A Sbjct: 589 WRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFAC 648 Query: 339 LFFVRHIYKSIKCE 298 +FV IY +K + Sbjct: 649 FWFVTKIYSVVKVD 662
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 75.1 bits (183), Expect = 2e-13 Identities = 38/133 (28%), Positives = 64/133 (48%) Frame = -1 Query: 696 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 517 PF +I +ELY+I+ S+W ++I+ + +TY L E+ +W W Sbjct: 536 PFGSIAVELYFIYTSLWFNKIFYMFGFLFFSFLLLTLTSSLVTILITYHSLCLENWKWQW 595 Query: 516 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 337 R F+ GG+ G + + + + GF + GY + I L+ G +GF +++ Sbjct: 596 RGFIIGGA-GCALYVFIHSILFTKFKLGGFTTIVLYVGYSSVISLLCCLVTGSIGFISSM 654 Query: 336 FFVRHIYKSIKCE 298 FVR IY SIK + Sbjct: 655 LFVRKIYSSIKVD 667
>CAC1D_CHICK (O73700) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (CHCACHA1D) Length = 2190 Score = 31.2 bits (69), Expect = 3.2 Identities = 20/73 (27%), Positives = 30/73 (41%) Frame = +3 Query: 312 TCICAEQRTRRHGSPPYPASGRMHSRCTPCTQRRKMSA*SQTYPIVHSSSTDSSHRRKIQ 491 TC ++ RR PP PAS R S C +R+ P H + H + Q Sbjct: 1927 TCYDTKRSPRRRLLPPTPASNRRSSFNFECLRRQSSQDDIPLSPNFHHRTALPLHLMQQQ 1986 Query: 492 LILRTGMTSTTTH 530 ++ G+ S+ H Sbjct: 1987 VMAVAGLDSSKAH 1999
>PDR2_NICPL (Q2PCF1) Pleiotropic drug resistance protein 2 (NpPDR2)| Length = 1461 Score = 25.4 bits (54), Expect(2) = 8.1 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = -1 Query: 438 MSGFMQTS---FFFGYMACICYAFFLMLGMV 355 M G+ T+ F+F Y +C+ +F M GM+ Sbjct: 1308 MIGYQWTAVKFFYFYYFIFMCFTYFSMYGMM 1338 Score = 22.7 bits (47), Expect(2) = 8.1 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = -2 Query: 365 WVWWASVPPCSLFGTYTSR--SSVSKVLLEDEEQQAELYSFL 246 W +WAS +++G + S+ ++ L E ++ ++ FL Sbjct: 1379 WYYWASPVAWTIYGIFASQVGDRTDELELTGETEKIQVNEFL 1420
>NU4M_MARPO (P26848) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 495 Score = 29.6 bits (65), Expect = 9.2 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 156 GLISNMPISSSCFLLHARANLFYTGTS 236 GL+S MPI S+ FL AN+ GTS Sbjct: 369 GLVSTMPIFSTIFLFFTLANMSLPGTS 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,129,199 Number of Sequences: 219361 Number of extensions: 1839366 Number of successful extensions: 4513 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4358 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4500 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
