ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37o20 |
|---|---|
| Clone Library Name | barley_pub |
>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)| (Ataxin-2-related protein) Length = 1075 Score = 36.6 bits (83), Expect = 0.068 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Frame = -3 Query: 416 HGAIQQNQHTSQFPTIHPCAS---SSHLSDNPQQHQSYLSPHLSSMQAGHS--HPGGRLN 252 H A Q + H Q P P S S H + +P QHQ+ +PHL S Q + HPG Sbjct: 863 HHATQLHAHQPQ-PATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTG 921 Query: 251 ILPSRP 234 PS P Sbjct: 922 TPPSLP 927
>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein| Length = 1049 Score = 36.2 bits (82), Expect = 0.088 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Frame = -3 Query: 416 HGAIQQNQHTSQFPTIHPCAS---SSHLSDNPQQHQSYLSPHLSSMQAGHS--HPGGRLN 252 H A Q + H Q P P S S H + +P QHQ+ +PHL S Q + HPG Sbjct: 867 HHATQLHGHQPQ-PATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTG 925 Query: 251 ILPSRP 234 PS P Sbjct: 926 TPPSLP 931
>SUR2_CAEEL (Q10669) Protein sur-2| Length = 1587 Score = 35.0 bits (79), Expect = 0.20 Identities = 30/104 (28%), Positives = 42/104 (40%) Frame = -3 Query: 587 FDIPGTSVLSEDETSPLVCSSEFRPPFEMQNQHELSSKRHIEQIESQPYLHFLDQGEHGA 408 F + + +E ET P E P E + + E K H + +ES P + L Q +H Sbjct: 1371 FYVSQSEPTAEQETPP---EKEKSPEKEKEQEQEQHVKAH-QPLESTPSVSSLPQMQH-- 1424 Query: 407 IQQNQHTSQFPTIHPCASSSHLSDNPQQHQSYLSPHLSSMQAGH 276 H Q P + S + PQQH S L HL + H Sbjct: 1425 -----HLQQAPLL----PSHQMMPPPQQHSSSLQHHLQHHTSTH 1459
>Y6451_RHILO (Q989F2) UPF0243 zinc-binding protein msl6451| Length = 65 Score = 32.7 bits (73), Expect = 0.98 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -3 Query: 251 ILPSRPAKFCDECGSPYLRATSKFCS 174 I P RP + C ECG P R T FCS Sbjct: 7 ITPLRPKRPCPECGKPSARDTFPFCS 32
>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox| protein NK-1) Length = 659 Score = 32.7 bits (73), Expect = 0.98 Identities = 26/90 (28%), Positives = 35/90 (38%) Frame = -3 Query: 536 VCSSEFRPPFEMQNQHELSSKRHIEQIESQPYLHFLDQGEHGAIQQNQHTSQFPTIHPCA 357 V S F P + + EL++ RH+ + E + H +QQ+ H Q P A Sbjct: 145 VGSVSFSSPAQQRKLLELNAVRHLARPEPLQHPHA------ALLQQHPHLLQNPQFLAAA 198 Query: 356 SSSHLSDNPQQHQSYLSPHLSSMQAGHSHP 267 Q HQ PH S Q H HP Sbjct: 199 QQHMHHHQHQHHQHPAHPH--SHQHPHPHP 226
>PO4F2_MOUSE (Q63934) POU domain, class 4, transcription factor 2| (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2) Length = 411 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = -1 Query: 514 HHSRCKTNMSYHRSDTLNR*KVNLTCTFSIKESMAPFSKTNILLSSLPSIHAHRHH 347 HHS K + +YH +T+ CT + S P S + L + H H HH Sbjct: 134 HHSPFKPDATYHTMNTI-------PCTSAASSSSVPISHPSALAGTHHHHHHHHHH 182
>EXP20_ARATH (Q9SZM1) Alpha-expansin 20 precursor (AtEXPA20) (At-EXP20) (AtEx20)| (Ath-ExpAlpha-1.23) Length = 256 Score = 32.3 bits (72), Expect = 1.3 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = +1 Query: 232 AGLLGRIFKRPPGWLCPACMEDRCGDK*DWCCCG 333 AGL G++F R G C AC+E RC + WC G Sbjct: 66 AGLSGKLFNR--GSSCGACLEVRCVNHIRWCLQG 97
>ANTP_DROSU (Q24645) Homeotic protein antennapedia| Length = 394 Score = 31.6 bits (70), Expect = 2.2 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 2/78 (2%) Frame = -3 Query: 467 IEQIESQPYLHFLDQGEHGAIQQNQHTSQFPTIH--PCASSSHLSDNPQQHQSYLSPHLS 294 + +++Q H+ H Q N +FP P + + QQHQ Y P Sbjct: 34 VTDLDAQQMHHYSQNPNH---QGNMPYPRFPPYDRMPYYNGQGMDQQQQQHQGYSRPDSP 90 Query: 293 SMQAGHSHPGGRLNILPS 240 S Q G P + N LP+ Sbjct: 91 SSQVGGVMPQAQTNGLPT 108
>Y1260_BRAJA (Q89UZ9) UPF0243 zinc-binding protein bsr1260| Length = 60 Score = 31.6 bits (70), Expect = 2.2 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -3 Query: 248 LPSRPAKFCDECGSPYLRATSKFCS 174 +P+ P K C CG P ++AT FCS Sbjct: 7 MPTGPLKTCPICGKPAVQATHPFCS 31
>CYA1_DROME (P32870) Ca(2+)/calmodulin-responsive adenylate cyclase (EC 4.6.1.1)| (ATP pyrophosphate-lyase) (Protein rutabaga) Length = 2248 Score = 31.2 bits (69), Expect = 2.8 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 14/97 (14%) Frame = -3 Query: 515 PPFEMQNQHELSSKRHIEQI---------ESQPYLHFLDQGEHGAIQQNQHT-----SQF 378 PP + + L+ +H ES+P LH I QH ++ Sbjct: 1431 PPHHLHSNLNLNQSQHPPSFTSLGYGQCRESEPLLHASSVAPVAKIMPMQHAPKYEPPRY 1490 Query: 377 PTIHPCASSSHLSDNPQQHQSYLSPHLSSMQAGHSHP 267 + H S H QQHQ + P S Q +HP Sbjct: 1491 TSPHTMLSQQHQQQQQQQHQ-HQQPQSQSAQDQQTHP 1526
>Y616_RHIME (Q92S21) UPF0243 zinc-binding protein R00616| Length = 70 Score = 30.8 bits (68), Expect = 3.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -3 Query: 254 NILPSRPAKFCDECGSPYLRATSKFCSE 171 N+ P R + C ECG P +R FCSE Sbjct: 11 NVEPLRATRPCAECGRPSVREHYPFCSE 38
>SYI_VIBVY (Q7MNM8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 948 Score = 30.8 bits (68), Expect = 3.7 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Frame = +2 Query: 140 LIRSLASWCHTLSRTWMSPLDTANHIR----HKTSQACLEEYSSVLQGGCVQLAWKIDA 304 +I WC + RTW P+ H H + +E+ + V++ +Q W IDA Sbjct: 460 MIEGRPEWCISRQRTWGVPIALFVHKETAELHPNTSELIEKVAQVVEQKGIQAWWDIDA 518
>SYI_VIBVU (Q8DES7) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 948 Score = 30.8 bits (68), Expect = 3.7 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Frame = +2 Query: 140 LIRSLASWCHTLSRTWMSPLDTANHIR----HKTSQACLEEYSSVLQGGCVQLAWKIDA 304 +I WC + RTW P+ H H + +E+ + V++ +Q W IDA Sbjct: 460 MIEGRPEWCISRQRTWGVPIALFVHKETAELHPNTSELIEKVAQVVEQKGIQAWWDIDA 518
>PO4F2_HUMAN (Q12837) POU domain, class 4, transcription factor 2| (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) Length = 410 Score = 30.8 bits (68), Expect = 3.7 Identities = 17/56 (30%), Positives = 23/56 (41%) Frame = -1 Query: 514 HHSRCKTNMSYHRSDTLNR*KVNLTCTFSIKESMAPFSKTNILLSSLPSIHAHRHH 347 HHS K + +YH +T+ CT + S P S L + H H HH Sbjct: 133 HHSPFKPDATYHTMNTI-------PCTSAASSSSVPISHPCALAGTHHHHHHHHHH 181
>MADS1_ORYSA (Q40700) MADS-box transcription factor 1 (OsMADS1) (Protein LEAFY| HULL STERILE1) (Protein SEPALLATA-like) Length = 257 Score = 30.8 bits (68), Expect = 3.7 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = -3 Query: 356 SSSHLSDNPQQHQSYLSPHLS----SMQAGHSHP 267 SS+ L+D P HQ L PH S+Q G+ HP Sbjct: 191 SSTVLADQPHHHQGLLHPHPDQGDHSLQIGYHHP 224
>EXP13_ARATH (Q9M9P0) Alpha-expansin 13 precursor (AtEXPA13) (At-EXP13) (AtEx13)| (Ath-ExpAlpha-1.22) Length = 266 Score = 30.8 bits (68), Expect = 3.7 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +1 Query: 235 GLLGRIFKRPPGWLCPACMEDRCGDK*DWCCCGLS 339 GL +F+R G +C AC E RC D WC G S Sbjct: 77 GLSETLFER--GQICGACFELRCVDDLRWCIPGTS 109
>Y247_BRUSU (P67480) UPF0243 zinc-binding protein BR0247| Length = 57 Score = 30.4 bits (67), Expect = 4.9 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -3 Query: 245 PSRPAKFCDECGSPYLRATSKFCS 174 P RP + C ECG P R FCS Sbjct: 3 PLRPTRPCPECGKPSTREAYPFCS 26
>Y1673_BRUME (P67479) UPF0243 zinc-binding protein BMEI1673| Length = 57 Score = 30.4 bits (67), Expect = 4.9 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -3 Query: 245 PSRPAKFCDECGSPYLRATSKFCS 174 P RP + C ECG P R FCS Sbjct: 3 PLRPTRPCPECGKPSTREAYPFCS 26
>PALF_NEUCR (Q7SGZ5) pH-response regulator protein palF/rim-8| Length = 927 Score = 30.4 bits (67), Expect = 4.9 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Frame = -3 Query: 602 TPQPVFDIPGTSVLSE-DETSPLVCSSEFRPPFEMQNQHELSSKRHIEQIESQP 444 TP P D+P L E D P+ PP +++ EL +R + + + P Sbjct: 724 TPTPAEDLPSAPTLEELDRPPPISRGPSHHPPSTTEDKQELERRRLLAEASAPP 777
>RPOC2_CHLRE (Q7PCJ6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 3120 Score = 30.4 bits (67), Expect = 4.9 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Frame = -3 Query: 641 DYKFYSAR---HKYRRTPQPVFDIPGTSVLSEDETSP-----LVCSSEFRPPFEMQNQHE 486 D+KF S++ K +R Q V + G S E+S L+CSS+++ +QN Sbjct: 1206 DFKFTSSKLVCPKRKRNLQIVCTLRGEEQTSVRESSVTHVNNLICSSKYKRSIRLQNDSH 1265 Query: 485 LSSKRHIEQIESQPYLHFLDQGEHGAIQQNQHTSQFPTIHPCASSS 348 L + ++ P+ + D + G + Q +SQ + P SS Sbjct: 1266 LFTTTKKAKV---PFTGYSDSHQAGKVLQ---SSQISSTKPKTQSS 1305
>HEM6_SYNPX (Q7U4M7) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)| (Coproporphyrinogen III oxidase, aerobic) (Coproporphyrinogenase) (Coprogen oxidase) Length = 363 Score = 30.0 bits (66), Expect = 6.3 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 190 VALRYGEPHSSQNFAGLLGRIFKRPPGWLCPACMEDRC 303 V YG + + LL +F +P WL A +EDRC Sbjct: 319 VRWEYGYKAEAGSREALLTELFTKPQDWLGDASLEDRC 356
>SAV_DROME (Q9VCR6) Scaffold protein salvador (Shar-pei)| Length = 608 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = -3 Query: 416 HGAIQQNQHTSQFPTIHPCASSSHLSDNPQQHQSYLSPHLSSMQAGHSHPGGRLNILPSR 237 HG +NQ+T Q HPC +S ++ + + P +S+ A +H L +P+ Sbjct: 472 HGTYYENQYTGQSQRQHPCLTSYYVYTTSAEPPKAIRPE-ASLYAPPTHTHNAL--VPAN 528 Query: 236 P 234 P Sbjct: 529 P 529
>FER2_CLOPA (P07324) Ferredoxin, 2Fe-2S (2FeCpFd)| Length = 102 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +1 Query: 457 ICSMCRFDDNSCWFCISNGGRNSEEQTNGEVSSSDKTDVPGMSNTGC 597 +C+ CR + FC S E E+ S D + ++NTGC Sbjct: 10 VCTSCRLNGKQQGFCYSKNSVEIVETFMEELDSRDLSSEVMVNNTGC 56
>GBF_DICDI (P36417) G-box-binding factor (GBF)| Length = 708 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 7/85 (8%) Frame = -3 Query: 500 QNQHELSSKRHIEQIESQPYLH-------FLDQGEHGAIQQNQHTSQFPTIHPCASSSHL 342 Q+ ++ ++H +Q++ Q H Q +H +QQ+QH Q H Sbjct: 148 QHHQQMQQQQHHQQMQQQQQHHQQMQQQQHHQQMQHHQLQQHQHQHQQQQQQQQHQQQHH 207 Query: 341 SDNPQQHQSYLSPHLSSMQAGHSHP 267 QQ Q + H HS P Sbjct: 208 QQQQQQQQQH---HQQQQHHQHSQP 229
>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)| (3-dehydrosphinganine reductase) (KDS reductase) Length = 969 Score = 29.6 bits (65), Expect = 8.3 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 2/101 (1%) Frame = -3 Query: 506 EMQNQHELSSKRHIEQIESQPYLHFLDQGEHGAIQQNQHTSQFPTIHPCASSSHLSDNPQ 327 + Q QH+ ++H +Q + L L Q + +QH Q P + P + +P Sbjct: 665 QQQQQHQ-QQQQHQQQQQQADMLQGLGQPQ---AHPHQHQHQ-PPVAPMGQPQQMQPSPH 719 Query: 326 QHQSYLSPHLSSMQAGHSHPG--GRLNILPSRPAKFCDECG 210 QH + P LS +H G+LN+ + + E G Sbjct: 720 QHP--MDPQLSKSTEDMAHESGYGQLNVESALAKRLAREPG 758
>ZNF24_MOUSE (Q91VN1) Zinc finger protein 24 (Zinc finger protein 191) (Zfp-191)| (Zinc finger protein ZF-12) Length = 368 Score = 29.6 bits (65), Expect = 8.3 Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 10/111 (9%) Frame = -3 Query: 467 IEQIESQPYLHFLDQGEHGAIQQNQHTSQFPTIHPCASSSHLSDNPQQHQSYLSPHLSSM 288 +E+I SQ L E A++ + + +H S H D+ L+P Sbjct: 152 VEEITSQEDAQGLPSSELDAVENQLKWASWE-LH---SLRHCDDDATTENGALAPKQEMA 207 Query: 287 QAGHSHPG-GRLNILPSRPAKFCDEC---------GSPYLRATSKFCSECG 165 AG SH G G LNI + K+ + C +P R C ECG Sbjct: 208 SAGESHEGPGTLNIGVPQLFKYGETCFPKGRFERKRNP-SRKKQHICDECG 257
>NPT2A_RABIT (Q28620) Sodium-dependent phosphate transport protein 2A| (Sodium/phosphate cotransporter 2A) (Na(+)/Pi cotransporter 2A) (Sodium-phosphate transport protein 2A) (Na(+)-dependent phosphate cotransporter 2A) (NaPi-2a) (Solute carrier family 34 Length = 642 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3 Query: 629 YSARHKYRRTPQPVFDIPGTSVLSEDETSPLVCSSEFRPPFEMQNQHE-LSSKRHIEQIE 453 + A Y +PQ + IPGTS + SP+ + P E + +HE L +K +E+ E Sbjct: 28 HGATFAYVPSPQALHRIPGTSAYAFPSLSPVALTEHGCPYGEARERHEPLPAKLALEE-E 86 Query: 452 SQP 444 +P Sbjct: 87 QKP 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,086,817 Number of Sequences: 219361 Number of extensions: 2012239 Number of successful extensions: 6564 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 6189 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6549 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
