>TPR_HUMAN (P12270) Nucleoprotein TPR|
          Length = 2349

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 18/76 (23%), Positives = 37/76 (48%)
 Frame = -3

Query: 646  NEMLQMEKDNLQQKMMEMDETIELLELEGSNRARMGDSHGQRSAGSEFSRRLAQSDMLVS 467
            N+ML+ EK+ L+Q + +M   +  LEL+            ++S   +  ++L + D+   
Sbjct: 1276 NKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDV--- 1332

Query: 466  HARHERSRNNHATSSR 419
              +  ++RN H  S +
Sbjct: 1333 --KRWKARNQHLVSQQ 1346

>CP135_MOUSE (Q6P5D4) Centrosomal protein of 135 kDa (Cep135 protein)|
           (Centrosomal protein 4)
          Length = 1140

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 646 NEMLQMEKDNLQQKMMEMDETIELLELEGSNRAR-----MGDSHGQRS 518
           N  L+ EK  LQ KM+ M ET+E LE +   +A+      GDS  Q++
Sbjct: 617 NHQLENEKYELQSKMLMMKETVESLENKSKLQAQKLSHVTGDSSHQKT 664

>CLPB_CAMJE (Q9PI02) Chaperone clpB|
          Length = 857

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 20/82 (24%), Positives = 37/82 (45%)
 Frame = -3

Query: 649 QNEMLQMEKDNLQQKMMEMDETIELLELEGSNRARMGDSHGQRSAGSEFSRRLAQSDMLV 470
           +NE L+ME D   QK ++ +   EL  L+    A       ++S     S +  + D+L 
Sbjct: 425 ENEALKMENDEKNQKRLD-EIAKELANLKEKQNALNSQFENEKSVFDGISAKKKEIDLLK 483

Query: 469 SHARHERSRNNHATSSRPRHGK 404
           + A   ++R     ++   +GK
Sbjct: 484 NEASLAKARGEFQKAAELEYGK 505

>YB88_YEAST (P38330) Protein YBR238C|
          Length = 731

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 532 HGQRSAGSEFSRRLAQSDMLVSHARHERSRNNHATSSRPRHGKHH*H 392
           H   + G+  +  LAQ++   S+  H  +RN+H  ++R  H  +H H
Sbjct: 75  HFGGNIGANNNNHLAQNNSNNSNNHHNNNRNHHHNNNRNHHQNNHNH 121

>MUSK_RAT (Q62838) Muscle, skeletal receptor tyrosine protein kinase|
           precursor (EC 2.7.10.1) (Muscle-specific kinase
           receptor) (MuSK)
          Length = 868

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 234 CSRRHSDLTCSAREMAPAPPP 296
           CS  HSDL+  AR  +P PPP
Sbjct: 675 CSLSHSDLSTRARVSSPGPPP 695

>MUSK_MOUSE (Q61006) Muscle, skeletal receptor tyrosine protein kinase|
           precursor (EC 2.7.10.1) (Muscle-specific kinase
           receptor) (MuSK)
          Length = 868

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 234 CSRRHSDLTCSAREMAPAPPP 296
           CS  HSDL+  AR  +P PPP
Sbjct: 675 CSLSHSDLSTRARVSSPGPPP 695

>MYSS_CYPCA (Q90339) Myosin heavy chain, fast skeletal muscle|
          Length = 1935

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 643  EMLQMEKDNLQQKMMEMDETIELLELEGSNRARMGDSHGQRSAGSEFSRRLAQSDMLVSH 464
            +M +  +D L +   + DE +  L    + RAR+   +G      EFSR+L + + LVS 
Sbjct: 1248 KMCRTLEDQLSEIKTKSDENVRQLNDMNAQRARLQTENG------EFSRQLEEKEALVSQ 1301

Query: 463  ARHERSRNNHATSSRPRH 410
                +           RH
Sbjct: 1302 LTRGKQAYTQQIEELKRH 1319


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,902,707
Number of Sequences: 219361
Number of extensions: 1473972
Number of successful extensions: 4412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4403
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7876239983
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)