ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38d16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late ... 30 5.6
2CDR3_CANAL (O42690) Opaque-specific ABC transporter CDR3 29 9.6

>ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 201

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 292 RNLNDASPAQRPCDPSSYHESSD 360
           ++LN ASP+  P DPSS H++ D
Sbjct: 147 QSLNGASPSLTPSDPSSLHKNQD 169



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>CDR3_CANAL (O42690) Opaque-specific ABC transporter CDR3|
          Length = 1501

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 615  HRGRATWLILPVVICLSQRLSHACASMNQFEL*NCEWL 502
            HRG   WLI+ ++   S  L+  C S NQ       W+
Sbjct: 1293 HRGVLMWLIMTLMFIYSSTLAQFCISWNQLADYAANWI 1330


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,218,992
Number of Sequences: 219361
Number of extensions: 1841893
Number of successful extensions: 3836
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3836
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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