ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37o12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 4e-33
2gb|AY105298.1| Zea mays PCO084210 mRNA sequence 151 4e-33
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 107 5e-20
4dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic D... 107 5e-20
5dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic D... 107 5e-20
6gb|AY111445.1| Zea mays CL2570_1 mRNA sequence 107 5e-20
7gb|U03632.1|CRU03632 Chlamydomonas reinhardtii NO- glutamate-1-s... 44 0.63
8emb|CR318660.16| Zebrafish DNA sequence from clone CH211-149I8 i... 42 2.5
9gb|AC118590.11| Mus musculus chromosome 15, clone RP24-506N7, co... 42 2.5
10gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosom... 40 9.8
11gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complet... 40 9.8
12gb|AC182351.3| Ateles geoffroyi clone UC1-76C3, complete sequence 40 9.8
13ref|XM_500975.1| Yarrowia lipolytica CLIB122, YALI0B16478g predi... 40 9.8
14gb|AC112205.2| Homo sapiens chromosome 5 clone RP11-80G7, comple... 40 9.8
15gb|AC097634.2| Homo sapiens chromosome 3 clone RP11-154H23, comp... 40 9.8
16dbj|AK042269.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 9.8
17gb|AC011942.6|AC011942 Homo sapiens, clone RP11-16I13, complete ... 40 9.8
18gb|AC008723.8|AC008723 Homo sapiens chromosome 5 clone CTB-95B16... 40 9.8
19gb|AC009686.14| Homo sapiens chromosome 8, clone RP11-92K15, com... 40 9.8
20dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
21gb|AC118589.10| Mus musculus chromosome 1, clone RP23-198G19, co... 40 9.8
22emb|CT574568.2| Pan troglodytes chromosome X clone PTB-081L12 ma... 40 9.8
23gb|AC134329.3| Mus musculus BAC clone RP24-310D17 from 10, compl... 40 9.8
24emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 9.8
25gb|U40455.1|HSU40455 Human chromosome X cosmid, clones 196B12, 9... 40 9.8
26emb|AL773592.5| Mouse DNA sequence from clone RP23-336B11 on chr... 40 9.8 
>dbj|AK100921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N20, full
            insert sequence
          Length = 3158

 Score =  151 bits (76), Expect = 4e-33
 Identities = 169/200 (84%)
 Strand = Plus / Minus

                                                                        
Query: 484  tcgtcgtcagagcagttgccgttctccatcacatcctgcatcgctaggtcgtcgtactcc 543
            |||||||| || ||||  ||||||||||||||||||||||| || || |||||||| |||
Sbjct: 2782 tcgtcgtcggaccagtaaccgttctccatcacatcctgcattgccagatcgtcgtattcc 2723

                                                                        
Query: 544  tcgtcggacttggtggagtgctcgtcgacagagcccgcttcaatctcatgaacatccctt 603
            |||||||||||||||||||| || || |||||||| ||||| ||||| || | ||| |||
Sbjct: 2722 tcgtcggacttggtggagtgttcatcaacagagcctgcttctatctcgtgcatatctctt 2663

                                                                        
Query: 604  tcttcgtcagatagatcctcatcagtttcagcgtcaggtgggtcgtcagcttcttcttca 663
            ||||| |||| ||| || || |||||| |||| ||||| || || ||||| |||||||| 
Sbjct: 2662 tcttcatcagttaggtcttcgtcagttccagcatcaggaggatcatcagcatcttcttcg 2603

                                
Query: 664  ctaccatagactgaataatc 683
            |||||| | |||||||||||
Sbjct: 2602 ctaccaaaaactgaataatc 2583
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>gb|AY105298.1| Zea mays PCO084210 mRNA sequence
          Length = 588

 Score =  151 bits (76), Expect = 4e-33
 Identities = 178/212 (83%)
 Strand = Plus / Minus

                                                                       
Query: 484 tcgtcgtcagagcagttgccgttctccatcacatcctgcatcgctaggtcgtcgtactcc 543
           ||||||||||| ||||  || ||||||||||||||  |||| |||| ||| ||||| |||
Sbjct: 387 tcgtcgtcagaccagtcaccattctccatcacatcacgcatggctaagtcctcgtattcc 328

                                                                       
Query: 544 tcgtcggacttggtggagtgctcgtcgacagagcccgcttcaatctcatgaacatccctt 603
           || || |||||||| ||||||||||| |||||||| || || ||||| || |  || |||
Sbjct: 327 tcatccgacttggttgagtgctcgtctacagagcctgcatctatctcgtgcatgtctctt 268

                                                                       
Query: 604 tcttcgtcagatagatcctcatcagtttcagcgtcaggtgggtcgtcagcttcttcttca 663
           ||||| |||| ||| || |||||||||||||| ||| | ||||||||||||||||| |||
Sbjct: 267 tcttcatcagttaggtcatcatcagtttcagcatcacgagggtcgtcagcttcttcgtca 208

                                           
Query: 664 ctaccatagactgaataatcctccatatgctc 695
           || ||||||||||| || ||||||||| ||||
Sbjct: 207 ctgccatagactgagtagtcctccataagctc 176



 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 376 aggtccaggttgtggtggtacc 397
           ||||||||||||||||||||||
Sbjct: 495 aggtccaggttgtggtggtacc 474
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 5e-20
 Identities = 93/106 (87%)
 Strand = Plus / Plus

                                                                            
Query: 484      tcgtcgtcagagcagttgccgttctccatcacatcctgcatcgctaggtcgtcgtactcc 543
                |||||||| || ||||  ||||||||||||||||||||||| || || |||||||| |||
Sbjct: 35189286 tcgtcgtcggaccagtaaccgttctccatcacatcctgcattgccagatcgtcgtattcc 35189345

                                                              
Query: 544      tcgtcggacttggtggagtgctcgtcgacagagcccgcttcaatct 589
                |||||||||||||||||||| || || |||||||| ||||| ||||
Sbjct: 35189346 tcgtcggacttggtggagtgttcatcaacagagcctgcttctatct 35189391



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                            
Query: 601      ctttcttcgtcagatagatcctcatcagtttcagcgtcaggtgggtcgtcagcttcttct 660
                |||||||| |||| ||| || || |||||| |||| ||||| || || ||||| ||||||
Sbjct: 35189617 ctttcttcatcagttaggtcttcgtcagttccagcatcaggaggatcatcagcatcttct 35189676

                                       
Query: 661      tcactaccatagactgaataatc 683
                || |||||| | |||||||||||
Sbjct: 35189677 tcgctaccaaaaactgaataatc 35189699



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 403    tccagcacggcgtcatctcc 422
              ||||||||||||||||||||
Sbjct: 165683 tccagcacggcgtcatctcc 165664
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>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0474F11
          Length = 139544

 Score =  107 bits (54), Expect = 5e-20
 Identities = 93/106 (87%)
 Strand = Plus / Plus

                                                                        
Query: 484  tcgtcgtcagagcagttgccgttctccatcacatcctgcatcgctaggtcgtcgtactcc 543
            |||||||| || ||||  ||||||||||||||||||||||| || || |||||||| |||
Sbjct: 1336 tcgtcgtcggaccagtaaccgttctccatcacatcctgcattgccagatcgtcgtattcc 1395

                                                          
Query: 544  tcgtcggacttggtggagtgctcgtcgacagagcccgcttcaatct 589
            |||||||||||||||||||| || || |||||||| ||||| ||||
Sbjct: 1396 tcgtcggacttggtggagtgttcatcaacagagcctgcttctatct 1441



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                        
Query: 601  ctttcttcgtcagatagatcctcatcagtttcagcgtcaggtgggtcgtcagcttcttct 660
            |||||||| |||| ||| || || |||||| |||| ||||| || || ||||| ||||||
Sbjct: 1667 ctttcttcatcagttaggtcttcgtcagttccagcatcaggaggatcatcagcatcttct 1726

                                   
Query: 661  tcactaccatagactgaataatc 683
            || |||||| | |||||||||||
Sbjct: 1727 tcgctaccaaaaactgaataatc 1749
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>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1202_E07
          Length = 145014

 Score =  107 bits (54), Expect = 5e-20
 Identities = 93/106 (87%)
 Strand = Plus / Plus

                                                                         
Query: 484   tcgtcgtcagagcagttgccgttctccatcacatcctgcatcgctaggtcgtcgtactcc 543
             |||||||| || ||||  ||||||||||||||||||||||| || || |||||||| |||
Sbjct: 84642 tcgtcgtcggaccagtaaccgttctccatcacatcctgcattgccagatcgtcgtattcc 84701

                                                           
Query: 544   tcgtcggacttggtggagtgctcgtcgacagagcccgcttcaatct 589
             |||||||||||||||||||| || || |||||||| ||||| ||||
Sbjct: 84702 tcgtcggacttggtggagtgttcatcaacagagcctgcttctatct 84747



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                         
Query: 601   ctttcttcgtcagatagatcctcatcagtttcagcgtcaggtgggtcgtcagcttcttct 660
             |||||||| |||| ||| || || |||||| |||| ||||| || || ||||| ||||||
Sbjct: 84973 ctttcttcatcagttaggtcttcgtcagttccagcatcaggaggatcatcagcatcttct 85032

                                    
Query: 661   tcactaccatagactgaataatc 683
             || |||||| | |||||||||||
Sbjct: 85033 tcgctaccaaaaactgaataatc 85055
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>gb|AY111445.1| Zea mays CL2570_1 mRNA sequence
          Length = 878

 Score =  107 bits (54), Expect = 5e-20
 Identities = 111/130 (85%)
 Strand = Plus / Plus

                                                                       
Query: 506 tctccatcacatcctgcatcgctaggtcgtcgtactcctcgtcggacttggtggagtgct 565
           |||||||||||||  |||| |||||||| || ||||||||||| |||||||| |||||||
Sbjct: 656 tctccatcacatcgcgcatggctaggtcctcatactcctcgtctgacttggtcgagtgct 715

                                                                       
Query: 566 cgtcgacagagcccgcttcaatctcatgaacatccctttcttcgtcagatagatcctcat 625
           |||| |||||||| || || ||||| || |  || |||||||| || |||||||| ||||
Sbjct: 716 cgtccacagagcctgcatctatctcgtgcatgtctctttcttcatcggatagatcttcat 775

                     
Query: 626 cagtttcagc 635
           ||||||||||
Sbjct: 776 cagtttcagc 785



 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 376 aggtccaggttgtggtggtacc 397
           ||||||||||||||||||||||
Sbjct: 520 aggtccaggttgtggtggtacc 541
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>gb|U03632.1|CRU03632 Chlamydomonas reinhardtii NO- glutamate-1-semialdehyde
           aminotransferase (gsa) mRNA, complete cds
          Length = 2002

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 240 tgtgcccaagagcaccgcggccgcca 265
           |||||||||||||||||| |||||||
Sbjct: 634 tgtgcccaagagcaccgccgccgcca 659
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>emb|CR318660.16| Zebrafish DNA sequence from clone CH211-149I8 in linkage group 21,
              complete sequence
          Length = 162045

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 649    tcagcttcttcttcactaccatagactga 677
              ||||||||||||||||||| | |||||||
Sbjct: 123313 tcagcttcttcttcactacaacagactga 123341
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>gb|AC118590.11| Mus musculus chromosome 15, clone RP24-506N7, complete sequence
          Length = 155519

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 456   ggtgccataccccgcagcctg 476
             |||||||||||||||||||||
Sbjct: 87426 ggtgccataccccgcagcctg 87406
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>gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosome 1, complete
            sequence
          Length = 183428

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  aatattcctatatatggcca 142
            ||||||||||||||||||||
Sbjct: 1476 aatattcctatatatggcca 1495
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>gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complete sequence
          Length = 214280

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    aatattcctatatatggcca 142
              ||||||||||||||||||||
Sbjct: 125513 aatattcctatatatggcca 125532
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>gb|AC182351.3| Ateles geoffroyi clone UC1-76C3, complete sequence
          Length = 212614

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     ttttcattattcgagttttg 105
              ||||||||||||||||||||
Sbjct: 130117 ttttcattattcgagttttg 130098
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>ref|XM_500975.1| Yarrowia lipolytica CLIB122, YALI0B16478g predicted mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 gttgtggtggtacctgccct 403
           ||||||||||||||||||||
Sbjct: 289 gttgtggtggtacctgccct 308
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>gb|AC112205.2| Homo sapiens chromosome 5 clone RP11-80G7, complete sequence
          Length = 137376

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 662   cactaccatagactgaataatcct 685
             |||||||| |||||||||||||||
Sbjct: 68253 cactaccacagactgaataatcct 68230
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>gb|AC097634.2| Homo sapiens chromosome 3 clone RP11-154H23, complete sequence
          Length = 193553

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 467    ccgcagcctgctcatcatcg 486
              ||||||||||||||||||||
Sbjct: 169167 ccgcagcctgctcatcatcg 169148
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>dbj|AK042269.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630076P03 product:unclassifiable, full
           insert sequence
          Length = 2316

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 gatcctctctaacagtcaca 169
           ||||||||||||||||||||
Sbjct: 63  gatcctctctaacagtcaca 44
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>gb|AC011942.6|AC011942 Homo sapiens, clone RP11-16I13, complete sequence
          Length = 122538

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   ctctaacagtcacaaacaca 175
             ||||||||||||||||||||
Sbjct: 42133 ctctaacagtcacaaacaca 42152
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>gb|AC008723.8|AC008723 Homo sapiens chromosome 5 clone CTB-95B16, complete sequence
          Length = 109616

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 662   cactaccatagactgaataatcct 685
             |||||||| |||||||||||||||
Sbjct: 98754 cactaccacagactgaataatcct 98731
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>gb|AC009686.14| Homo sapiens chromosome 8, clone RP11-92K15, complete sequence
          Length = 191166

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    gccaatatactcttgtgcaa 78
             ||||||||||||||||||||
Sbjct: 54716 gccaatatactcttgtgcaa 54697
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>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1435_F07
          Length = 139041

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 403    tccagcacggcgtcatctcc 422
              ||||||||||||||||||||
Sbjct: 114710 tccagcacggcgtcatctcc 114691
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>gb|AC118589.10| Mus musculus chromosome 1, clone RP23-198G19, complete sequence
          Length = 217156

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  aatattcctatatatggcca 142
            ||||||||||||||||||||
Sbjct: 1253 aatattcctatatatggcca 1234
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>emb|CT574568.2| Pan troglodytes chromosome X clone PTB-081L12 map Xq28, complete sequence
          Length = 199100

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     acttttcattattcgagttt 103
              ||||||||||||||||||||
Sbjct: 125540 acttttcattattcgagttt 125521
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>gb|AC134329.3| Mus musculus BAC clone RP24-310D17 from 10, complete sequence
          Length = 159173

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    gatcctctctaacagtcaca 169
              ||||||||||||||||||||
Sbjct: 107566 gatcctctctaacagtcaca 107547
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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 384     gttgtggtggtacctgccct 403
               ||||||||||||||||||||
Sbjct: 2168802 gttgtggtggtacctgccct 2168783
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>gb|U40455.1|HSU40455 Human chromosome X cosmid, clones 196B12, 9H11 and 43H9, repeat units
             and sequence tagged sites
          Length = 106000

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    acttttcattattcgagttt 103
             ||||||||||||||||||||
Sbjct: 89845 acttttcattattcgagttt 89864
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>emb|AL773592.5| Mouse DNA sequence from clone RP23-336B11 on chromosome 4, complete
              sequence
          Length = 219956

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     caaattgaacttttcattat 95
              ||||||||||||||||||||
Sbjct: 174564 caaattgaacttttcattat 174583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,332,804
Number of Sequences: 3902068
Number of extensions: 5332804
Number of successful extensions: 102052
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101928
Number of HSP's gapped (non-prelim): 124
length of query: 716
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 693
effective length of database: 17,143,297,704
effective search space: 11880305308872
effective search space used: 11880305308872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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