ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38d11 |
|---|---|
| Clone Library Name | barley_pub |
>RL35A_ARATH (P51422) 60S ribosomal protein L35a| Length = 111 Score = 192 bits (488), Expect = 6e-49 Identities = 87/111 (78%), Positives = 102/111 (91%) Frame = -2 Query: 515 VKGRTGQRVRLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAK 336 +KGR G+RVRLYVRGT+LGYKRSKSNQY SLVQIEGVNT+E+V WY GKR+AY+YKAK Sbjct: 1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60 Query: 335 TKSNGTHYRCIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 TK NG+HYRCIWGKV+RPHGN+GVVR+KFTSNLP ++MG +VRVFMYPS+I Sbjct: 61 TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>RL33A_YEAST (P05744) 60S ribosomal protein L33-A (L37A) (YL37) (RP47)| Length = 106 Score = 115 bits (289), Expect = 7e-26 Identities = 55/102 (53%), Positives = 73/102 (71%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKTKSNGTHYR 309 RLYV+G L Y+RSK SL++IEGV T +D +Y GKR+AYVY+A + G+ R Sbjct: 5 RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIR 64 Query: 308 CIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 +WGKV+R HGN+GVVRA F +NLPA+ G VR+F+YPS+I Sbjct: 65 VMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 106
>RL33B_YEAST (P41056) 60S ribosomal protein L33-B (L37B) (YL37) (RP47)| Length = 106 Score = 114 bits (285), Expect = 2e-25 Identities = 54/102 (52%), Positives = 73/102 (71%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKTKSNGTHYR 309 RLYV+G L Y+RSK SL++IEGV T ++ +Y GKR+AYVY+A + G+ R Sbjct: 5 RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIR 64 Query: 308 CIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 +WGKV+R HGN+GVVRA F +NLPA+ G VR+F+YPS+I Sbjct: 65 VMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 106
>RL35A_CAEEL (P49180) 60S ribosomal protein L35a| Length = 123 Score = 112 bits (281), Expect = 6e-25 Identities = 55/108 (50%), Positives = 72/108 (66%), Gaps = 6/108 (5%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKA--KTKSNG-- 321 RLYV+ G+KR Q E SL+++EGV +ED +Y GKR+ Y+YKA KT G Sbjct: 16 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHT 75 Query: 320 --THYRCIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 T R IWGK++RPHGN G VRAKF N+P A+GK++RV +YPS+I Sbjct: 76 VATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 123
>RL35A_XENLA (P02434) 60S ribosomal protein L35a (L32)| Length = 110 Score = 112 bits (281), Expect = 6e-25 Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 7/109 (6%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKT-------K 330 RL+ + T GYKR NQ E +L++IEGV R++ +Y GKR AYVYKAK K Sbjct: 4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGK 63 Query: 329 SNGTHYRCIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 N T R IWGKV+R HGN+G+VRAKF SNLPA+A+G ++RV +YPS I Sbjct: 64 PNRT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>RL35A_RAT (P04646) 60S ribosomal protein L35a| Length = 110 Score = 110 bits (274), Expect = 4e-24 Identities = 58/109 (53%), Positives = 74/109 (67%), Gaps = 7/109 (6%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKT-------K 330 RL+ + GYKR NQ E +L++IEGV R++ +Y GKR AYVYKAK K Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63 Query: 329 SNGTHYRCIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 N T R IWGKV+R HGN+G+VRAKF SNLPA+A+G ++RV +YPS I Sbjct: 64 PNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>RL35A_MOUSE (O55142) 60S ribosomal protein L35a| Length = 110 Score = 110 bits (274), Expect = 4e-24 Identities = 58/109 (53%), Positives = 74/109 (67%), Gaps = 7/109 (6%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKT-------K 330 RL+ + GYKR NQ E +L++IEGV R++ +Y GKR AYVYKAK K Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63 Query: 329 SNGTHYRCIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 N T R IWGKV+R HGN+G+VRAKF SNLPA+A+G ++RV +YPS I Sbjct: 64 PNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>RL35A_ICTPU (Q90YT3) 60S ribosomal protein L35a| Length = 110 Score = 110 bits (274), Expect = 4e-24 Identities = 57/109 (52%), Positives = 75/109 (68%), Gaps = 7/109 (6%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKT-------K 330 RL+ + GYKR NQ E +L+++EGV +R +V +Y GKR AYVYKAK K Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGK 63 Query: 329 SNGTHYRCIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 N T R IWGKV+R HGN+G+VRAKFTSNLP +A+G ++RV +YPS + Sbjct: 64 PNKT--RVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110
>RL35A_PONPY (Q5R8K6) 60S ribosomal protein L35a| Length = 110 Score = 109 bits (273), Expect = 5e-24 Identities = 58/109 (53%), Positives = 74/109 (67%), Gaps = 7/109 (6%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKT-------K 330 RL+ + GYKR NQ E +L++IEGV R++ +Y GKR AYVYKAK K Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63 Query: 329 SNGTHYRCIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 N T R IWGKV+R HGN+G+VRAKF SNLPA+A+G ++RV +YPS I Sbjct: 64 PNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>RL35A_MACFA (P61272) 60S ribosomal protein L35a| Length = 110 Score = 109 bits (273), Expect = 5e-24 Identities = 58/109 (53%), Positives = 74/109 (67%), Gaps = 7/109 (6%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKT-------K 330 RL+ + GYKR NQ E +L++IEGV R++ +Y GKR AYVYKAK K Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63 Query: 329 SNGTHYRCIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 N T R IWGKV+R HGN+G+VRAKF SNLPA+A+G ++RV +YPS I Sbjct: 64 PNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>RL35A_HUMAN (P18077) 60S ribosomal protein L35a| Length = 110 Score = 109 bits (273), Expect = 5e-24 Identities = 58/109 (53%), Positives = 74/109 (67%), Gaps = 7/109 (6%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKT-------K 330 RL+ + GYKR NQ E +L++IEGV R++ +Y GKR AYVYKAK K Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63 Query: 329 SNGTHYRCIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 N T R IWGKV+R HGN+G+VRAKF SNLPA+A+G ++RV +YPS I Sbjct: 64 PNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>RL33A_SCHPO (Q9USX4) 60S ribosomal protein L33-A (L37A)| Length = 108 Score = 107 bits (267), Expect = 2e-23 Identities = 50/102 (49%), Positives = 71/102 (69%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKTKSNGTHYR 309 RLYV+ L ++RSK + SLV+IEG +++E+ +Y GKR+ +VYK+ G+ R Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIR 66 Query: 308 CIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 IWG VSRPHGN+GVVRA+FT NLP + G +RV +YPS++ Sbjct: 67 VIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108
>RL33B_SCHPO (Q9USG6) 60S ribosomal protein L33-B (L37B)| Length = 108 Score = 105 bits (263), Expect = 7e-23 Identities = 48/102 (47%), Positives = 70/102 (68%) Frame = -2 Query: 488 RLYVRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKTKSNGTHYR 309 RLYV+ L ++RSK + S+V+IEG +++E+ +Y GKR+ YVYK+ G+ R Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIR 66 Query: 308 CIWGKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRVFMYPSSI 183 IWG ++RPHGN+G VRA+F NLPA+ G +RV +YPS+I Sbjct: 67 VIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108
>RL35A_PYRWO (P20299) 50S ribosomal protein L35Ae| Length = 87 Score = 57.8 bits (138), Expect = 2e-08 Identities = 30/92 (32%), Positives = 52/92 (56%) Frame = -2 Query: 479 VRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKTKSNGTHYRCIW 300 ++G +L Y+RSK NQ+ +++ VN+RE+ + G+ + + K+ S + + Sbjct: 3 IKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLW----KSPSG----KILK 54 Query: 299 GKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRV 204 GK+ R HG G VRA+F LP +A+G V + Sbjct: 55 GKIVRVHGTKGAVRARFEKGLPGQALGDYVEI 86
>RL35A_PYRFU (Q8TZV6) 50S ribosomal protein L35Ae| Length = 87 Score = 57.8 bits (138), Expect = 2e-08 Identities = 30/92 (32%), Positives = 52/92 (56%) Frame = -2 Query: 479 VRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKTKSNGTHYRCIW 300 ++G +L Y+RSK NQ+ +++ VN+RE+ + G+ + + K+ S + + Sbjct: 3 IKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLW----KSPSG----KILK 54 Query: 299 GKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRV 204 GK+ R HG G VRA+F LP +A+G V + Sbjct: 55 GKIVRVHGTKGAVRARFEKGLPGQALGDYVEI 86
>RL35A_PYRAB (Q9V1P2) 50S ribosomal protein L35Ae| Length = 87 Score = 57.8 bits (138), Expect = 2e-08 Identities = 30/92 (32%), Positives = 52/92 (56%) Frame = -2 Query: 479 VRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKTKSNGTHYRCIW 300 ++G +L Y+RSK NQ+ +++ VN+RE+ + G+ + + K+ S + + Sbjct: 3 IKGVVLSYRRSKENQHTNVMIIKPLNVNSREEASKLIGRLVIW----KSPSG----KLLK 54 Query: 299 GKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRV 204 GK+ R HG G VRA+F LP +A+G V + Sbjct: 55 GKIVRVHGTKGAVRARFEKGLPGQALGDYVEI 86
>RL35A_PYRHO (O74099) 50S ribosomal protein L35Ae| Length = 87 Score = 57.4 bits (137), Expect = 3e-08 Identities = 29/92 (31%), Positives = 52/92 (56%) Frame = -2 Query: 479 VRGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKTKSNGTHYRCIW 300 ++G +L Y+RSK NQ+ +++ +N+RE+ + G+ + + K+ S + + Sbjct: 3 IKGVVLSYRRSKENQHTNVMIIKPLDINSREEASKLIGRLVVW----KSPSG----KVLK 54 Query: 299 GKVSRPHGNTGVVRAKFTSNLPAEAMGKKVRV 204 GK+ R HG G VRA+F LP +A+G V + Sbjct: 55 GKIVRVHGTRGAVRARFEKGLPGQALGDYVEI 86
>RL35A_METKA (Q8TYY6) 50S ribosomal protein L35Ae| Length = 90 Score = 52.8 bits (125), Expect = 7e-07 Identities = 29/89 (32%), Positives = 44/89 (49%) Frame = -2 Query: 476 RGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGGKRMAYVYKAKTKSNGTHYRCIWG 297 RG I+ Y+ + Q +++ EGV +R + A GK + + + K I G Sbjct: 6 RGVIVNYRMGRHTQDPRQCIIEFEGVESRSEAAQLIGKEVIWKHPETGK-------VIRG 58 Query: 296 KVSRPHGNTGVVRAKFTSNLPAEAMGKKV 210 KV HGN G VR +F LP +A+G +V Sbjct: 59 KVVDTHGNNGAVRVRFERGLPGQALGTEV 87
>RL35A_AERPE (Q9Y9G4) 50S ribosomal protein L35Ae| Length = 133 Score = 38.9 bits (89), Expect = 0.010 Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Frame = -2 Query: 476 RGTILGYKRSKSNQYETASLVQIEGVNTREDVAWYGG-----KRMAYVYKAKTKSNGTHY 312 RG +LGY+R + QY +LV++ + R+ + G R VYK Sbjct: 44 RGVVLGYRRGTNTQYPQHALVKLLLDDPRKAGLYVSGIAFYRDRYGNVYK---------- 93 Query: 311 RCIWGKVSRPHGNT-GVVRAKFTSNLPAEAMGKKVRV 204 G+V R HG GVV KF LP +A G V V Sbjct: 94 ----GRVLRLHGRRGGVVVVKFNPPLPGQATGGVVEV 126
>GLND_THIDA (Q3SKP1) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 850 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Frame = -1 Query: 501 RPAREALRPRHHPRIQEVQVEPVRDG------VACADRGG 400 +P R + RHHP V +E R G + CADRGG Sbjct: 754 QPGRLSRHQRHHPYPAAVHLEADRGGDGQVLSITCADRGG 793
>AMGO2_MOUSE (Q80ZD9) Amphoterin-induced protein 2 precursor (AMIGO-2)| (Alivin-1) Length = 519 Score = 29.6 bits (65), Expect = 6.2 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%) Frame = -3 Query: 181 KRLFSSVEDFARPLGFHF-----ESCKMDSVRDSELNCSFRVKNFSFHVI 47 +R FSSV DF S ++ +++S LNCS+ V N SFH + Sbjct: 244 RRHFSSVMDFKNDYTCRLWSDSRHSHQLQLLQESFLNCSYSVINGSFHAL 293 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,706,588 Number of Sequences: 219361 Number of extensions: 983558 Number of successful extensions: 2863 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2819 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2851 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
