ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags37o04 |
|---|---|
| Clone Library Name | barley_pub |
>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein| 5.4) (Ultrahigh sulfur keratin-associated protein 5.4) Length = 288 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/52 (32%), Positives = 21/52 (40%) Frame = -1 Query: 176 KIACCRKDVHISWCGCALTKPKQSYKGVVALNKLTACCYK*CHHPYISQNSC 21 K CC S C + KP S G + +CC C PY Q+SC Sbjct: 203 KPCCCSSGCGSSCCQSSCCKPCCSSSGCGS-----SCCQSSCCKPYCCQSSC 249
>Y2270_DEIRA (Q9RS57) UPF0078 membrane protein DR2270| Length = 195 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 338 LVRLPAYRSVLTPRLSLSACMIATIAA 258 L +P YR+ L PRL L+A AT+ A Sbjct: 132 LALIPLYRATLQPRLRLNAIPFATVVA 158
>KRA43_HUMAN (Q9BYR4) Keratin-associated protein 4-3 (Keratin-associated protein| 4.3) (Ultrahigh sulfur keratin-associated protein 4.3) (Fragment) Length = 98 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/50 (28%), Positives = 18/50 (36%) Frame = -1 Query: 170 ACCRKDVHISWCGCALTKPKQSYKGVVALNKLTACCYK*CHHPYISQNSC 21 +CC +S C C + P T CC C HP +SC Sbjct: 61 SCCHPSCCVSSCRCPFSCP-------------TTCCRTTCFHPICCGSSC 97
>Y1169_SHEON (Q8EHP8) UPF0247 protein SO1169| Length = 156 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -1 Query: 164 CRKDVHISWCGCALTKPKQSYKGVVALNKLTACCYK*CHHPY 39 C++ H SWC ALT P + VVA + A +HPY Sbjct: 113 CKEAAHQSWCLSALTLPHPLVRIVVAESLYRAWSVN-TNHPY 153
>AL3A2_MOUSE (P47740) Fatty aldehyde dehydrogenase (EC 1.2.1.3) (Aldehyde| dehydrogenase, microsomal) (Aldehyde dehydrogenase family 3 member A2) (Aldehyde dehydrogenase 10) Length = 484 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -3 Query: 345 DFFGEIAGISFSPDTEALFVSVHDRNYSSLLQYSRRRFYGYLDSA 211 DF+GE I SPD E + H + SLL+ + F G +D A Sbjct: 267 DFYGE--NIKASPDYERIINLRHFKRLQSLLKGQKIAFGGEMDEA 309
>WDR1_DROME (Q9VU68) Putative actin-interacting protein 1 (AIP1)| Length = 608 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -3 Query: 393 IHIFDVGSGY-DRKQELDFFGEIAGISFSPDTEAL 292 +HI+ + G + K ELD G + +S+SPD + L Sbjct: 470 LHIYTLKGGVLEPKVELDHLGAVTDVSYSPDLKYL 504
>Y2004_CLOPE (Q8XIV9) UPF0135 protein CPE2004| Length = 262 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 Query: 253 EEAAIVAIMHADKESLGVRTERYAGNLTK 339 +E ++ I++ K SLGV+ RYAG+L + Sbjct: 144 KEMTVLEIINLIKSSLGVKNLRYAGDLNE 172
>STRN_SORMA (Q70M86) Striatin Pro11| Length = 845 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -3 Query: 396 FIHIFDVGSGYDRKQELDFFGEIAGISFSPDTEALFVSVHD 274 +I FD SG L G ++ +S SPD L + HD Sbjct: 751 YIRFFDANSGQCTYNMLAHPGSVSSLSLSPDGRELVSAGHD 791
>TIPD_DICDI (O15736) Protein tipD| Length = 612 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Frame = -3 Query: 393 IHIFDVGSGYDRKQELDFFGEIAGISFSPDTEALFVSVHD---RNYSSLLQYSRRRFYGY 223 + ++DV SG + L I +SFSP+ E++ + +D R +++ L SR G+ Sbjct: 348 VKVWDVISGQQKSTLLGASQSIVSVSFSPNDESILGTSNDNSARLWNTELGRSRHTLTGH 407 Query: 222 L 220 + Sbjct: 408 I 408
>AMPN_CAUCR (P37893) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide| hydrolase) Length = 863 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +1 Query: 217 IKVPVEPSTTVLEEAAIVAIMHADKESLGVRTERYAGNLTK 339 + +P EP ++ EAA A +HA ++ L R + G+L + Sbjct: 609 LALPSEPDLALMFEAADPAALHAARDHLRTRIAVHLGDLLR 649
>TGFA_RAT (P01134) Transforming growth factor alpha precursor (TGF-alpha)| (EGF-like TGF) (ETGF) (TGF type 1) Length = 159 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%) Frame = -1 Query: 173 IACCRKDVHISWCG---CALTKPKQSYKGVVALNKLTACCY 60 I CC+ H WC C KP KG TACC+ Sbjct: 120 IHCCQVRKHCEWCRALVCRHEKPSALLKG------RTACCH 154
>TGFA_PIG (Q06922) Transforming growth factor alpha precursor (TGF-alpha)| (EGF-like TGF) (ETGF) (TGF type 1) Length = 160 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%) Frame = -1 Query: 173 IACCRKDVHISWCG---CALTKPKQSYKGVVALNKLTACCY 60 I CC+ H WC C KP KG TACC+ Sbjct: 121 IHCCQVRKHCEWCRALICRHEKPSALLKG------RTACCH 155
>TGFA_MOUSE (P48030) Transforming growth factor alpha precursor (TGF-alpha)| (EGF-like TGF) (ETGF) (TGF type 1) Length = 159 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%) Frame = -1 Query: 173 IACCRKDVHISWCG---CALTKPKQSYKGVVALNKLTACCY 60 I CC+ H WC C KP KG TACC+ Sbjct: 120 IHCCQLRKHCEWCRALVCRHEKPSALLKG------RTACCH 154
>TGFA_HUMAN (P01135) Transforming growth factor alpha precursor (TGF-alpha)| (EGF-like TGF) (ETGF) (TGF type 1) Length = 160 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%) Frame = -1 Query: 173 IACCRKDVHISWCG---CALTKPKQSYKGVVALNKLTACCY 60 I CC+ H WC C KP KG TACC+ Sbjct: 121 IHCCQVRKHCEWCRALICRHEKPSALLKG------RTACCH 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,452,534 Number of Sequences: 219361 Number of extensions: 868627 Number of successful extensions: 2467 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2420 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2465 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
