ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38d03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507073.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0060J21.31 mRNA Length = 1456 Score = 367 bits (185), Expect = 3e-98 Identities = 317/361 (87%) Strand = Plus / Minus Query: 267 accatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggccacag 326 |||||||||||||||| | |||||||||||||| |||| || ||||||||||| || | Sbjct: 1064 accatatcttgttcttcaaccaaaagagcatcaaaactacaccgatcacaatggcaacgg 1005 Query: 327 gggcatacttccgaattaaggcctggcgattgagatcctttgccttgtctgcatacattc 386 |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| Sbjct: 1004 gggcatacttccgaatcaaggcctggcgattgagatccttagccttatctgcatacattc 945 Query: 387 tcgtatcagaggtcaacctactagacatttgactcacctgatctagtttttcacccacac 446 | || ||||| ||||||||| | ||||||| | | ||||| ||||| |||||||| |||| Sbjct: 944 ttgtgtcagaagtcaacctagttgacatttcagtgacctggtctagcttttcaccgacac 885 Query: 447 caagaacttcttgaacattgcgagtcataatctggtgcacctcgtagagctcatcattca 506 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 884 caagaacttcttgaacattgcgagtcataatctgatgcacctcatagagctcatcattca 825 Query: 507 acttggcaaggttcctttgggttctggtatccaaatacagtttcctggttttctgtatga 566 | || ||||| ||||| |||||||| || |||||||| |||||| | || ||||| |||| Sbjct: 824 atttcgcaagattcctctgggttctagtgtccaaataaagtttcttagtcttctgaatga 765 Query: 567 atgtatcaaatttgatgaaagcatatggccttgcagcagtttcaatttggctgccattga 626 |||| ||||| || || || ||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 764 atgtgtcaaacttaataaaggcatatggccttgcagctgtttcgatttgactgccattga 705 Query: 627 c 627 | Sbjct: 704 c 704
>ref|XM_469942.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1228 Score = 367 bits (185), Expect = 3e-98 Identities = 317/361 (87%) Strand = Plus / Minus Query: 267 accatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggccacag 326 |||||||||||||||| | |||||||||||||| |||| || ||||||||||| || | Sbjct: 836 accatatcttgttcttcaaccaaaagagcatcaaaactacaccgatcacaatggcaacgg 777 Query: 327 gggcatacttccgaattaaggcctggcgattgagatcctttgccttgtctgcatacattc 386 |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| Sbjct: 776 gggcatacttccgaatcaaggcctggcgattgagatccttagccttatctgcatacattc 717 Query: 387 tcgtatcagaggtcaacctactagacatttgactcacctgatctagtttttcacccacac 446 | || ||||| ||||||||| | ||||||| | | ||||| ||||| |||||||| |||| Sbjct: 716 ttgtgtcagaagtcaacctagttgacatttcagtgacctggtctagcttttcaccgacac 657 Query: 447 caagaacttcttgaacattgcgagtcataatctggtgcacctcgtagagctcatcattca 506 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 656 caagaacttcttgaacattgcgagtcataatctgatgcacctcatagagctcatcattca 597 Query: 507 acttggcaaggttcctttgggttctggtatccaaatacagtttcctggttttctgtatga 566 | || ||||| ||||| |||||||| || |||||||| |||||| | || ||||| |||| Sbjct: 596 atttcgcaagattcctctgggttctagtgtccaaataaagtttcttagtcttctgaatga 537 Query: 567 atgtatcaaatttgatgaaagcatatggccttgcagcagtttcaatttggctgccattga 626 |||| ||||| || || || ||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 536 atgtgtcaaacttaataaaggcatatggccttgcagctgtttcgatttgactgccattga 477 Query: 627 c 627 | Sbjct: 476 c 476
>dbj|AK064781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B09, full insert sequence Length = 1842 Score = 254 bits (128), Expect = 3e-64 Identities = 230/264 (87%) Strand = Plus / Minus Query: 267 accatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggccacag 326 |||||||||||||||| | |||||||||||||| |||| || ||||||||||| |||| Sbjct: 1464 accatatcttgttcttcaaccaaaagagcatcaaaactacaccgatcacaatggcaacag 1405 Query: 327 gggcatacttccgaattaaggcctggcgattgagatcctttgccttgtctgcatacattc 386 |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||| Sbjct: 1404 gggcatacttccgaatcaaggcctggcgattgagatccttagccttatctgcatagattc 1345 Query: 387 tcgtatcagaggtcaacctactagacatttgactcacctgatctagtttttcacccacac 446 | || ||||| |||| |||| ||||||| | | ||||| ||||| |||||||| |||| Sbjct: 1344 ttgtgtcagaagtcagcctagctgacatttcagtgacctggtctagcttttcaccgacac 1285 Query: 447 caagaacttcttgaacattgcgagtcataatctggtgcacctcgtagagctcatcattca 506 ||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| | Sbjct: 1284 caagaacttcttgaacattacgagtcataatttgatgcacctcatagagctcatcattta 1225 Query: 507 acttggcaaggttcctttgggttc 530 | || ||||| ||||| ||||||| Sbjct: 1224 atttcgcaagattcctctgggttc 1201 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 587 gcatatggccttgcagcagtttcaatttggctgccattgac 627 ||||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct: 1187 gcatacggccttgcagctgtttcgatttgactgccgttgac 1147
>ref|NM_188651.1| Oryza sativa (japonica cultivar-group), Ozsa8254 predicted mRNA Length = 642 Score = 238 bits (120), Expect = 2e-59 Identities = 171/188 (90%) Strand = Plus / Minus Query: 443 acaccaagaacttcttgaacattgcgagtcataatctggtgcacctcgtagagctcatca 502 ||||| ||||||||||||| ||||||||||||||||||||||||||| || ||||||||| Sbjct: 479 acaccgagaacttcttgaaaattgcgagtcataatctggtgcacctcataaagctcatca 420 Query: 503 ttcaacttggcaaggttcctttgggttctggtatccaaatacagtttcctggttttctgt 562 ||||||||||| ||||||||||||||||||||||||||||||| ||| | || |||||| Sbjct: 419 ttcaacttggccaggttcctttgggttctggtatccaaatacaacttcttcgtcttctgt 360 Query: 563 atgaatgtatcaaatttgatgaaagcatatggccttgcagcagtttcaatttggctgcca 622 ||||| || ||||| || || ||||||||||| ||||||||||||||||||||| ||||| Sbjct: 359 atgaaagtgtcaaacttaataaaagcatatggtcttgcagcagtttcaatttggttgcca 300 Query: 623 ttgaccct 630 |||||||| Sbjct: 299 ttgaccct 292 Score = 192 bits (97), Expect = 1e-45 Identities = 145/161 (90%) Strand = Plus / Minus Query: 265 tcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggccac 324 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 642 tcaccatatcttgttcttgacccaaaagagcatcagtactattccaatcacaatggcaac 583 Query: 325 aggggcatacttccgaattaaggcctggcgattgagatcctttgccttgtctgcatacat 384 | |||||||||| ||||| | |||||| |||||||||||||| ||||| || ||||| || Sbjct: 582 aagggcatacttgcgaataagggcctgacgattgagatccttcgccttctccgcataaat 523 Query: 385 tctcgtatcagaggtcaacctactagacatttgactcacct 425 ||| ||||||||| |||||||| | ||||||| |||||||| Sbjct: 522 tctagtatcagagatcaacctattggacatttcactcacct 482
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 196 bits (99), Expect = 6e-47 Identities = 132/143 (92%) Strand = Plus / Plus Query: 425 tgatctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatctggtgc 484 ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| Sbjct: 7439879 tgatctagtttttcaccaacaccgagaacttcttgaaaattgcgagtcataatctggtgc 7439938 Query: 485 acctcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatccaaatac 544 ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 7439939 acctcataaagctcatcattcaacttggccaggttcctttgggttctggtatccaaatac 7439998 Query: 545 agtttcctggttttctgtatgaa 567 | ||| | || ||||||||||| Sbjct: 7439999 aacttcttcgtcttctgtatgaa 7440021 Score = 127 bits (64), Expect = 5e-26 Identities = 82/88 (93%) Strand = Plus / Plus Query: 264 gtcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcca 323 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 7438572 gtcaccatatcttgttcttgacccaaaagagcatcagtactattccaatcacaatggcaa 7438631 Query: 324 caggggcatacttccgaattaaggcctg 351 || |||||||||| ||||| | |||||| Sbjct: 7438632 caagggcatacttgcgaataagggcctg 7438659 Score = 77.8 bits (39), Expect = 4e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 584 aaagcatatggccttgcagcagtttcaatttggctgccattgaccct 630 ||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 7440120 aaagcatatggtcttgcagcagtttcaatttggttgccattgaccct 7440166 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 348 cctggcgattgagatcctttgccttgtctgcatacattctcgtatcagaggtcaacctac 407 |||| |||||||||||||| ||||| || ||||| ||||| ||||||||| |||||||| Sbjct: 7439299 cctgacgattgagatccttcgccttctccgcataaattctagtatcagagatcaacctat 7439358 Query: 408 tagacatttgactcacct 425 | ||||||| |||||||| Sbjct: 7439359 tggacatttcactcacct 7439376 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 171 ctcgcttgaataggcagatgcgggataagctgtagaagcatctgttga 218 ||||||||||| |||||||||||||||||| | ||||||||||||| Sbjct: 7438451 ctcgcttgaatgggcagatgcgggataagccatcaaagcatctgttga 7438498
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0702F03 Length = 141111 Score = 196 bits (99), Expect = 6e-47 Identities = 132/143 (92%) Strand = Plus / Plus Query: 425 tgatctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatctggtgc 484 ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| Sbjct: 100907 tgatctagtttttcaccaacaccgagaacttcttgaaaattgcgagtcataatctggtgc 100966 Query: 485 acctcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatccaaatac 544 ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 100967 acctcataaagctcatcattcaacttggccaggttcctttgggttctggtatccaaatac 101026 Query: 545 agtttcctggttttctgtatgaa 567 | ||| | || ||||||||||| Sbjct: 101027 aacttcttcgtcttctgtatgaa 101049 Score = 127 bits (64), Expect = 5e-26 Identities = 82/88 (93%) Strand = Plus / Plus Query: 264 gtcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcca 323 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 99600 gtcaccatatcttgttcttgacccaaaagagcatcagtactattccaatcacaatggcaa 99659 Query: 324 caggggcatacttccgaattaaggcctg 351 || |||||||||| ||||| | |||||| Sbjct: 99660 caagggcatacttgcgaataagggcctg 99687 Score = 77.8 bits (39), Expect = 4e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 584 aaagcatatggccttgcagcagtttcaatttggctgccattgaccct 630 ||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 101148 aaagcatatggtcttgcagcagtttcaatttggttgccattgaccct 101194 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 348 cctggcgattgagatcctttgccttgtctgcatacattctcgtatcagaggtcaacctac 407 |||| |||||||||||||| ||||| || ||||| ||||| ||||||||| |||||||| Sbjct: 100327 cctgacgattgagatccttcgccttctccgcataaattctagtatcagagatcaacctat 100386 Query: 408 tagacatttgactcacct 425 | ||||||| |||||||| Sbjct: 100387 tggacatttcactcacct 100404 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 171 ctcgcttgaataggcagatgcgggataagctgtagaagcatctgttga 218 ||||||||||| |||||||||||||||||| | ||||||||||||| Sbjct: 99479 ctcgcttgaatgggcagatgcgggataagccatcaaagcatctgttga 99526
>dbj|AK103163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121D12, full insert sequence Length = 1301 Score = 194 bits (98), Expect = 2e-46 Identities = 146/162 (90%) Strand = Plus / Minus Query: 264 gtcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcca 323 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 822 gtcaccatatcttgttcttgacccaaaagagcatcagtactattccaatcacaatggcaa 763 Query: 324 caggggcatacttccgaattaaggcctggcgattgagatcctttgccttgtctgcataca 383 || |||||||||| ||||| | |||||| |||||||||||||| ||||| || ||||| | Sbjct: 762 caagggcatacttgcgaataagggcctgacgattgagatccttcgccttctccgcataaa 703 Query: 384 ttctcgtatcagaggtcaacctactagacatttgactcacct 425 |||| ||||||||| |||||||| | ||||||| |||||||| Sbjct: 702 ttctagtatcagagatcaacctattggacatttcactcacct 661 Score = 168 bits (85), Expect = 1e-38 Identities = 124/137 (90%) Strand = Plus / Minus Query: 494 agctcatcattcaacttggcaaggttcctttgggttctggtatccaaatacagtttcctg 553 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | Sbjct: 653 agctcatcattcaacttggccaggttcctttgggttctggtatccaaatacaacttcttc 594 Query: 554 gttttctgtatgaatgtatcaaatttgatgaaagcatatggccttgcagcagtttcaatt 613 || ||||||||||| || ||||| || || ||||||||||| |||||||||||||||||| Sbjct: 593 gtcttctgtatgaaagtgtcaaacttaataaaagcatatggtcttgcagcagtttcaatt 534 Query: 614 tggctgccattgaccct 630 ||| ||||||||||||| Sbjct: 533 tggttgccattgaccct 517 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 171 ctcgcttgaataggcagatgcgggataagctgtagaagcatctgttga 218 ||||||||||| |||||||||||||||||| | ||||||||||||| Sbjct: 943 ctcgcttgaatgggcagatgcgggataagccatcaaagcatctgttga 896
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 165 bits (83), Expect = 2e-37 Identities = 128/143 (89%) Strand = Plus / Minus Query: 428 tctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatctggtgcacc 487 ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 135084 tctagcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacc 135025 Query: 488 tcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatccaaatacagt 547 || ||||||||||||||||| || ||||| ||||| |||||||| || |||||||| ||| Sbjct: 135024 tcatagagctcatcattcaatttcgcaagattcctctgggttctagtgtccaaataaagt 134965 Query: 548 ttcctggttttctgtatgaatgt 570 ||| | || ||||| |||||||| Sbjct: 134964 ttcttagtcttctgaatgaatgt 134942 Score = 89.7 bits (45), Expect = 1e-14 Identities = 75/85 (88%) Strand = Plus / Minus Query: 267 accatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggccacag 326 |||||||||||||||| | |||||||||||||| |||| || ||||||||||| || | Sbjct: 136236 accatatcttgttcttcaaccaaaagagcatcaaaactacaccgatcacaatggcaacgg 136177 Query: 327 gggcatacttccgaattaaggcctg 351 |||||||||||||||| |||||||| Sbjct: 136176 gggcatacttccgaatcaaggcctg 136152 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 348 cctggcgattgagatcctttgccttgtctgcatacattctcgtatcagaggtcaacctac 407 ||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||||||| Sbjct: 135515 cctggcgattgagatccttagccttatctgcatacattcttgtgtcagaagtcaacctag 135456 Query: 408 tagacattt 416 | ||||||| Sbjct: 135455 ttgacattt 135447 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 587 gcatatggccttgcagcagtttcaatttggctgccattgac 627 ||||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 134842 gcatatggccttgcagctgtttcgatttgactgccattgac 134802
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 165 bits (83), Expect = 2e-37 Identities = 128/143 (89%) Strand = Plus / Plus Query: 428 tctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatctggtgcacc 487 ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 32608823 tctagcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacc 32608882 Query: 488 tcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatccaaatacagt 547 || ||||||||||||||||| || ||||| ||||| |||||||| || |||||||| ||| Sbjct: 32608883 tcatagagctcatcattcaatttcgcaagattcctctgggttctagtgtccaaataaagt 32608942 Query: 548 ttcctggttttctgtatgaatgt 570 ||| | || ||||| |||||||| Sbjct: 32608943 ttcttagtcttctgaatgaatgt 32608965 Score = 89.7 bits (45), Expect = 1e-14 Identities = 75/85 (88%) Strand = Plus / Plus Query: 267 accatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggccacag 326 |||||||||||||||| | |||||||||||||| |||| || ||||||||||| || | Sbjct: 32607671 accatatcttgttcttcaaccaaaagagcatcaaaactacaccgatcacaatggcaacgg 32607730 Query: 327 gggcatacttccgaattaaggcctg 351 |||||||||||||||| |||||||| Sbjct: 32607731 gggcatacttccgaatcaaggcctg 32607755 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 348 cctggcgattgagatcctttgccttgtctgcatacattctcgtatcagaggtcaacctac 407 ||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||||||| Sbjct: 32608392 cctggcgattgagatccttagccttatctgcatacattcttgtgtcagaagtcaacctag 32608451 Query: 408 tagacattt 416 | ||||||| Sbjct: 32608452 ttgacattt 32608460 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 587 gcatatggccttgcagcagtttcaatttggctgccattgac 627 ||||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 32609065 gcatatggccttgcagctgtttcgatttgactgccattgac 32609105
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 165 bits (83), Expect = 2e-37 Identities = 128/143 (89%) Strand = Plus / Plus Query: 428 tctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatctggtgcacc 487 ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 32699333 tctagcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacc 32699392 Query: 488 tcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatccaaatacagt 547 || ||||||||||||||||| || ||||| ||||| |||||||| || |||||||| ||| Sbjct: 32699393 tcatagagctcatcattcaatttcgcaagattcctctgggttctagtgtccaaataaagt 32699452 Query: 548 ttcctggttttctgtatgaatgt 570 ||| | || ||||| |||||||| Sbjct: 32699453 ttcttagtcttctgaatgaatgt 32699475 Score = 89.7 bits (45), Expect = 1e-14 Identities = 75/85 (88%) Strand = Plus / Plus Query: 267 accatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggccacag 326 |||||||||||||||| | |||||||||||||| |||| || ||||||||||| || | Sbjct: 32698181 accatatcttgttcttcaaccaaaagagcatcaaaactacaccgatcacaatggcaacgg 32698240 Query: 327 gggcatacttccgaattaaggcctg 351 |||||||||||||||| |||||||| Sbjct: 32698241 gggcatacttccgaatcaaggcctg 32698265 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 348 cctggcgattgagatcctttgccttgtctgcatacattctcgtatcagaggtcaacctac 407 ||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||||||| Sbjct: 32698902 cctggcgattgagatccttagccttatctgcatacattcttgtgtcagaagtcaacctag 32698961 Query: 408 tagacattt 416 | ||||||| Sbjct: 32698962 ttgacattt 32698970 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 587 gcatatggccttgcagcagtttcaatttggctgccattgac 627 ||||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 32699575 gcatatggccttgcagctgtttcgatttgactgccattgac 32699615
>gb|BT012943.1| Lycopersicon esculentum clone 114111R, mRNA sequence Length = 1192 Score = 163 bits (82), Expect = 9e-37 Identities = 184/218 (84%) Strand = Plus / Minus Query: 410 gacatttgactcacctgatctagtttttcacccacaccaagaacttcttgaacattgcga 469 ||||| ||||| ||||| || | ||||||||| ||||||||||||||||| ||||| ||| Sbjct: 731 gacatctgactgacctggtccaatttttcaccaacaccaagaacttcttgtacatttcga 672 Query: 470 gtcataatctggtgcacctcgtagagctcatcattcaacttggcaaggttcctttgggtt 529 ||||| ||||| || || || || || |||||||||||||| |||| || | ||| ||| Sbjct: 671 gtcattatctgatgaacttcataaagttcatcattcaactttgcaacattgcgttgagtt 612 Query: 530 ctggtatccaaatacagtttcctggttttctgtatgaatgtatcaaatttgatgaaagca 589 ||||||||| ||||||||| | || |||||||||||||||||||||||||| || ||| Sbjct: 611 ctggtatcctggtacagtttcttcgtcttctgtatgaatgtatcaaatttgataaaggca 552 Query: 590 tatggccttgcagcagtttcaatttggctgccattgac 627 || || || ||||||||||||||||| || |||||||| Sbjct: 551 taaggtctagcagcagtttcaatttgactcccattgac 514
>gb|DQ235196.1| Solanum tuberosum clone 168D05 unknown mRNA Length = 1007 Score = 157 bits (79), Expect = 5e-35 Identities = 184/219 (84%) Strand = Plus / Minus Query: 407 ctagacatttgactcacctgatctagtttttcacccacaccaagaacttcttgaacattg 466 |||||||| ||||| ||||| || | |||||||| || |||||||||||||| ||||| Sbjct: 634 ctagacatctgactgacctggtccaacttttcaccaacgccaagaacttcttggacattt 575 Query: 467 cgagtcataatctggtgcacctcgtagagctcatcattcaacttggcaaggttcctttgg 526 |||||||| ||||| || || ||||| ||||||||||||||||| | || ||| | ||| Sbjct: 574 cgagtcattatctgatgaacttcgtaaagctcatcattcaacttagaaatgttgcgttga 515 Query: 527 gttctggtatccaaatacagtttcctggttttctgtatgaatgtatcaaatttgatgaaa 586 || || |||||| ||||||||| | || ||||||||||||||||||||||| || ||| Sbjct: 514 gtcctagtatcctggtacagtttcttcgtcttctgtatgaatgtatcaaatttaataaaa 455 Query: 587 gcatatggccttgcagcagtttcaatttggctgccattg 625 |||||||| || ||||||||||||||||| || |||||| Sbjct: 454 gcatatggtctagcagcagtttcaatttgactcccattg 416
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 428 tctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatctggtgcacc 487 ||||| |||||||| ||||||||||||||||||||||| ||||||||||| || |||||| Sbjct: 5024672 tctagcttttcaccgacaccaagaacttcttgaacattacgagtcataatttgatgcacc 5024731 Query: 488 tcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatccaaatacagt 547 || |||||||||||||| || || ||||| ||||| |||||||| ||||||||||| ||| Sbjct: 5024732 tcatagagctcatcatttaatttcgcaagattcctctgggttctagtatccaaatagagt 5024791 Query: 548 ttcctggttttctgtatgaatgt 570 ||| | || ||||| |||||||| Sbjct: 5024792 ttcttagtcttctgaatgaatgt 5024814 Score = 97.6 bits (49), Expect = 4e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 267 accatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggccacag 326 |||||||||||||||| | |||||||||||||| |||| || ||||||||||| |||| Sbjct: 5023613 accatatcttgttcttcaaccaaaagagcatcaaaactacaccgatcacaatggcaacag 5023672 Query: 327 gggcatacttccgaattaaggcctg 351 |||||||||||||||| |||||||| Sbjct: 5023673 gggcatacttccgaatcaaggcctg 5023697 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 348 cctggcgattgagatcctttgccttgtctgcatacattctcgtatcagaggtcaacctac 407 ||||||||||||||||||| ||||| |||||||| ||||| || ||||| |||| |||| Sbjct: 5024304 cctggcgattgagatccttagccttatctgcatagattcttgtgtcagaagtcagcctag 5024363 Query: 408 tagacattt 416 | ||||||| Sbjct: 5024364 ttgacattt 5024372 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 587 gcatatggccttgcagcagtttcaatttggctgccattgac 627 ||||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct: 5024919 gcatacggccttgcagctgtttcgatttgactgccgttgac 5024959
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 428 tctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatctggtgcacc 487 ||||| |||||||| ||||||||||||||||||||||| ||||||||||| || |||||| Sbjct: 66786 tctagcttttcaccgacaccaagaacttcttgaacattacgagtcataatttgatgcacc 66845 Query: 488 tcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatccaaatacagt 547 || |||||||||||||| || || ||||| ||||| |||||||| ||||||||||| ||| Sbjct: 66846 tcatagagctcatcatttaatttcgcaagattcctctgggttctagtatccaaatagagt 66905 Query: 548 ttcctggttttctgtatgaatgt 570 ||| | || ||||| |||||||| Sbjct: 66906 ttcttagtcttctgaatgaatgt 66928 Score = 97.6 bits (49), Expect = 4e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 267 accatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggccacag 326 |||||||||||||||| | |||||||||||||| |||| || ||||||||||| |||| Sbjct: 65727 accatatcttgttcttcaaccaaaagagcatcaaaactacaccgatcacaatggcaacag 65786 Query: 327 gggcatacttccgaattaaggcctg 351 |||||||||||||||| |||||||| Sbjct: 65787 gggcatacttccgaatcaaggcctg 65811 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 348 cctggcgattgagatcctttgccttgtctgcatacattctcgtatcagaggtcaacctac 407 ||||||||||||||||||| ||||| |||||||| ||||| || ||||| |||| |||| Sbjct: 66418 cctggcgattgagatccttagccttatctgcatagattcttgtgtcagaagtcagcctag 66477 Query: 408 tagacattt 416 | ||||||| Sbjct: 66478 ttgacattt 66486 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 587 gcatatggccttgcagcagtttcaatttggctgccattgac 627 ||||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct: 67033 gcatacggccttgcagctgtttcgatttgactgccgttgac 67073
>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12, complete sequence Length = 187972 Score = 137 bits (69), Expect = 5e-29 Identities = 72/73 (98%) Strand = Plus / Minus Query: 264 gtcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 179386 gtcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcaa 179327 Query: 324 caggggcatactt 336 ||||||||||||| Sbjct: 179326 caggggcatactt 179314 Score = 77.8 bits (39), Expect = 4e-11 Identities = 45/47 (95%) Strand = Plus / Minus Query: 584 aaagcatatggccttgcagcagtttcaatttggctgccattgaccct 630 ||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 178803 aaagcatatggtcttgcagcagtttcaatttggttgccattgaccct 178757 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 171 ctcgcttgaataggcagatgcgggataagctgtagaagcatctgttga 218 ||||||||||| |||||||||||||||||| | |||||||||||||| Sbjct: 179507 ctcgcttgaatgggcagatgcgggataagccattgaagcatctgttga 179460
>gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0024A05, complete sequence Length = 82985 Score = 137 bits (69), Expect = 5e-29 Identities = 72/73 (98%) Strand = Plus / Plus Query: 264 gtcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 71483 gtcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcaa 71542 Query: 324 caggggcatactt 336 ||||||||||||| Sbjct: 71543 caggggcatactt 71555 Score = 77.8 bits (39), Expect = 4e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 584 aaagcatatggccttgcagcagtttcaatttggctgccattgaccct 630 ||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 72066 aaagcatatggtcttgcagcagtttcaatttggttgccattgaccct 72112 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 171 ctcgcttgaataggcagatgcgggataagctgtagaagcatctgttga 218 ||||||||||| |||||||||||||||||| | |||||||||||||| Sbjct: 71362 ctcgcttgaatgggcagatgcgggataagccattgaagcatctgttga 71409
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 137 bits (69), Expect = 5e-29 Identities = 72/73 (98%) Strand = Plus / Minus Query: 264 gtcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 12842207 gtcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcaa 12842148 Query: 324 caggggcatactt 336 ||||||||||||| Sbjct: 12842147 caggggcatactt 12842135 Score = 77.8 bits (39), Expect = 4e-11 Identities = 45/47 (95%) Strand = Plus / Minus Query: 584 aaagcatatggccttgcagcagtttcaatttggctgccattgaccct 630 ||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 12841624 aaagcatatggtcttgcagcagtttcaatttggttgccattgaccct 12841578 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 171 ctcgcttgaataggcagatgcgggataagctgtagaagcatctgttga 218 ||||||||||| |||||||||||||||||| | |||||||||||||| Sbjct: 12842328 ctcgcttgaatgggcagatgcgggataagccattgaagcatctgttga 12842281
>dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0061E21 Length = 155085 Score = 137 bits (69), Expect = 5e-29 Identities = 72/73 (98%) Strand = Plus / Minus Query: 264 gtcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcca 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 42725 gtcaccatatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcaa 42666 Query: 324 caggggcatactt 336 ||||||||||||| Sbjct: 42665 caggggcatactt 42653 Score = 77.8 bits (39), Expect = 4e-11 Identities = 45/47 (95%) Strand = Plus / Minus Query: 584 aaagcatatggccttgcagcagtttcaatttggctgccattgaccct 630 ||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 42142 aaagcatatggtcttgcagcagtttcaatttggttgccattgaccct 42096 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 171 ctcgcttgaataggcagatgcgggataagctgtagaagcatctgttga 218 ||||||||||| |||||||||||||||||| | |||||||||||||| Sbjct: 42846 ctcgcttgaatgggcagatgcgggataagccattgaagcatctgttga 42799
>gb|AY104256.1| Zea mays PCO116634 mRNA sequence Length = 995 Score = 133 bits (67), Expect = 8e-28 Identities = 101/111 (90%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 521 ctttgggttctggtatccaaatacagtttcctggt-tttctgtatgaatgtatcaaattt 579 ||||| ||||| | |||| ||||||||||||| || |||||| |||||||||||||| || Sbjct: 820 ctttgagttcttggatcccaatacagtttcctagtctttctggatgaatgtatcaaactt 761 Query: 580 gatgaaagcatatggccttgcagcagtttcaatttggctgccattgaccct 630 ||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 760 gataaaagcatatggccttgcagcagtttcaatttggttgccattgaccct 710
>ref|XM_481473.1| Oryza sativa (japonica cultivar-group), mRNA Length = 579 Score = 127 bits (64), Expect = 5e-26 Identities = 67/68 (98%) Strand = Plus / Minus Query: 269 catatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggccacaggg 328 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 417 catatcttgttcttgacccaaaagagcatcagtactatcccaatcacaatggcaacaggg 358 Query: 329 gcatactt 336 |||||||| Sbjct: 357 gcatactt 350 Score = 77.8 bits (39), Expect = 4e-11 Identities = 45/47 (95%) Strand = Plus / Minus Query: 584 aaagcatatggccttgcagcagtttcaatttggctgccattgaccct 630 ||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 326 aaagcatatggtcttgcagcagtttcaatttggttgccattgaccct 280
>gb|AY555143.1| Zea may BAC clone c573L14, complete sequence Length = 144792 Score = 101 bits (51), Expect = 3e-18 Identities = 111/131 (84%) Strand = Plus / Plus Query: 443 acaccaagaacttcttgaacattgcgagtcataatctggtgcacctcgtagagctcatca 502 ||||||||||| |||||||||||||||| |||||| || |||||||| ||||| ||||| Sbjct: 116258 acaccaagaacctcttgaacattgcgagccataatttgatgcacctcatagagttcatcg 116317 Query: 503 ttcaacttggcaaggttcctttgggttctggtatccaaatacagtttcctggttttctgt 562 ||||| || || ||||| || || ||||| ||||||||||| |||||| | || || || Sbjct: 116318 ttcaattttgcgaggtttctctgagttcttgtatccaaatatagtttcttagtcttatgg 116377 Query: 563 atgaatgtatc 573 ||||||||||| Sbjct: 116378 atgaatgtatc 116388 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 573 caaatttgatgaaagcatatggccttgcagcagtttcaatttggctgccattgaccct 630 |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 116476 caaacttgataaaagcatatggccttgcagcagtttcaatttggttgccattgaccct 116533
>ref|NM_101060.2| Arabidopsis thaliana SEC22; transporter AT1G11890 (SEC22) mRNA, complete cds Length = 1092 Score = 91.7 bits (46), Expect = 3e-15 Identities = 157/194 (80%) Strand = Plus / Minus Query: 419 ctcacctgatctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatc 478 |||||||| || || |||||||| ||||| | |||||||| ||||| || ||||| || Sbjct: 650 ctcacctggtccagcttttcaccaacacctaagacttcttgcacattccgggtcattatt 591 Query: 479 tggtgcacctcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatcc 538 || || ||||| ||||| ||||||||||||||||| | ||| | ||| || | || || Sbjct: 590 tgatgaacctcatagagttcatcattcaacttggcgatgtttcgttgcgtacgagtgtct 531 Query: 539 aaatacagtttcctggttttctgtatgaatgtatcaaatttgatgaaagcatatggcctt 598 ||||||||| |||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 530 tggtacagtttcttggttttctgtatgaatgtatcaaatttaataaaggcataaggccga 471 Query: 599 gcagcagtttcaat 612 ||||| |||||||| Sbjct: 470 gcagctgtttcaat 457
>gb|AY079413.1| Arabidopsis thaliana putative vesicle transport protein (At1g11890) mRNA, complete cds Length = 688 Score = 91.7 bits (46), Expect = 3e-15 Identities = 157/194 (80%) Strand = Plus / Minus Query: 419 ctcacctgatctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatc 478 |||||||| || || |||||||| ||||| | |||||||| ||||| || ||||| || Sbjct: 503 ctcacctggtccagcttttcaccaacacctaagacttcttgcacattccgggtcattatt 444 Query: 479 tggtgcacctcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatcc 538 || || ||||| ||||| ||||||||||||||||| | ||| | ||| || | || || Sbjct: 443 tgatgaacctcatagagttcatcattcaacttggcgatgtttcgttgcgtacgagtgtct 384 Query: 539 aaatacagtttcctggttttctgtatgaatgtatcaaatttgatgaaagcatatggcctt 598 ||||||||| |||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 383 tggtacagtttcttggttttctgtatgaatgtatcaaatttaataaaggcataaggccga 324 Query: 599 gcagcagtttcaat 612 ||||| |||||||| Sbjct: 323 gcagctgtttcaat 310
>gb|AY045795.1| Arabidopsis thaliana putative vesicle transport protein (At1g11890) mRNA, complete cds Length = 992 Score = 91.7 bits (46), Expect = 3e-15 Identities = 157/194 (80%) Strand = Plus / Minus Query: 419 ctcacctgatctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatc 478 |||||||| || || |||||||| ||||| | |||||||| ||||| || ||||| || Sbjct: 620 ctcacctggtccagcttttcaccaacacctaagacttcttgcacattccgggtcattatt 561 Query: 479 tggtgcacctcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatcc 538 || || ||||| ||||| ||||||||||||||||| | ||| | ||| || | || || Sbjct: 560 tgatgaacctcatagagttcatcattcaacttggcgatgtttcgttgcgtacgagtgtct 501 Query: 539 aaatacagtttcctggttttctgtatgaatgtatcaaatttgatgaaagcatatggcctt 598 ||||||||| |||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 500 tggtacagtttcttggttttctgtatgaatgtatcaaatttaataaaggcataaggccga 441 Query: 599 gcagcagtttcaat 612 ||||| |||||||| Sbjct: 440 gcagctgtttcaat 427
>emb|BX814703.1|CNS0ABY6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB8ZF07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 995 Score = 91.7 bits (46), Expect = 3e-15 Identities = 157/194 (80%) Strand = Plus / Minus Query: 419 ctcacctgatctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatc 478 |||||||| || || |||||||| ||||| | |||||||| ||||| || ||||| || Sbjct: 645 ctcacctggtccagcttttcaccaacacctaagacttcttgcacattccgggtcattatt 586 Query: 479 tggtgcacctcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatcc 538 || || ||||| ||||| ||||||||||||||||| | ||| | ||| || | || || Sbjct: 585 tgatgaacctcatagagttcatcattcaacttggcgatgtttcgttgcgtacgagtgtct 526 Query: 539 aaatacagtttcctggttttctgtatgaatgtatcaaatttgatgaaagcatatggcctt 598 ||||||||| |||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 525 tggtacagtttcttggttttctgtatgaatgtatcaaatttaataaaggcataaggccga 466 Query: 599 gcagcagtttcaat 612 ||||| |||||||| Sbjct: 465 gcagctgtttcaat 452
>emb|BX818041.1|CNS0AB1T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL58ZD05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 981 Score = 91.7 bits (46), Expect = 3e-15 Identities = 157/194 (80%) Strand = Plus / Minus Query: 419 ctcacctgatctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatc 478 |||||||| || || |||||||| ||||| | |||||||| ||||| || ||||| || Sbjct: 598 ctcacctggtccagcttttcaccaacacctaagacttcttgcacattccgggtcattatt 539 Query: 479 tggtgcacctcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatcc 538 || || ||||| ||||| ||||||||||||||||| | ||| | ||| || | || || Sbjct: 538 tgatgaacctcatagagttcatcattcaacttggcgatgtttcgttgcgtacgagtgtct 479 Query: 539 aaatacagtttcctggttttctgtatgaatgtatcaaatttgatgaaagcatatggcctt 598 ||||||||| |||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 478 tggtacagtttcttggttttctgtatgaatgtatcaaatttaataaaggcataaggccga 419 Query: 599 gcagcagtttcaat 612 ||||| |||||||| Sbjct: 418 gcagctgtttcaat 405
>emb|BX841894.1|CNS09Y4T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL14ZE07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 986 Score = 91.7 bits (46), Expect = 3e-15 Identities = 157/194 (80%) Strand = Plus / Minus Query: 419 ctcacctgatctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatc 478 |||||||| || || |||||||| ||||| | |||||||| ||||| || ||||| || Sbjct: 626 ctcacctggtccagcttttcaccaacacctaagacttcttgcacattccgggtcattatt 567 Query: 479 tggtgcacctcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatcc 538 || || ||||| ||||| ||||||||||||||||| | ||| | ||| || | || || Sbjct: 566 tgatgaacctcatagagttcatcattcaacttggcgatgtttcgttgcgtacgagtgtct 507 Query: 539 aaatacagtttcctggttttctgtatgaatgtatcaaatttgatgaaagcatatggcctt 598 ||||||||| |||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 506 tggtacagtttcttggttttctgtatgaatgtatcaaatttaataaaggcataaggccga 447 Query: 599 gcagcagtttcaat 612 ||||| |||||||| Sbjct: 446 gcagctgtttcaat 433
>gb|AY086749.1| Arabidopsis thaliana clone 273 mRNA, complete sequence Length = 1010 Score = 91.7 bits (46), Expect = 3e-15 Identities = 157/194 (80%) Strand = Plus / Minus Query: 419 ctcacctgatctagtttttcacccacaccaagaacttcttgaacattgcgagtcataatc 478 |||||||| || || |||||||| ||||| | |||||||| ||||| || ||||| || Sbjct: 650 ctcacctggtccagcttttcaccaacacctaagacttcttgcacattccgggtcattatt 591 Query: 479 tggtgcacctcgtagagctcatcattcaacttggcaaggttcctttgggttctggtatcc 538 || || ||||| ||||| ||||||||||||||||| | ||| | ||| || | || || Sbjct: 590 tgatgaacctcatagagttcatcattcaacttggcgatgtttcgttgcgtacgagtgtct 531 Query: 539 aaatacagtttcctggttttctgtatgaatgtatcaaatttgatgaaagcatatggcctt 598 ||||||||| |||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 530 tggtacagtttcttggttttctgtatgaatgtatcaaatttaataaaggcataaggccga 471 Query: 599 gcagcagtttcaat 612 ||||| |||||||| Sbjct: 470 gcagctgtttcaat 457
>gb|AC152057.11| Medicago truncatula clone mth2-25a12, complete sequence Length = 108797 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 436 ttcacccacaccaagaacttcttgaacattgcgagtcataatctggtgcacctcgtagag 495 |||||| |||||||||||||| || ||||| ||||||||||||||||| || || || || Sbjct: 51103 ttcaccaacaccaagaacttcctgcacattacgagtcataatctggtggacttcataaag 51162 Query: 496 ctcatcattcaacttggcaa 515 |||||||||||||| |||| Sbjct: 51163 ttcatcattcaactttgcaa 51182
>gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete sequence Length = 105327 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 434 ttttcacccacaccaagaacttcttgaacattgcgagtcataatctggtgcacctcgtag 493 |||||||| ||||| |||||||| || |||||||||||||| || ||||| || || || Sbjct: 82835 ttttcaccaacacccagaacttcctgcacattgcgagtcattatttggtggacttcatac 82894 Query: 494 agctcatcattcaacttggcaaggttcctttgggt 528 ||||||||||||||||| |||| |||| |||||| Sbjct: 82895 agctcatcattcaacttagcaatattccgttgggt 82929 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 573 caaatttgatgaaagcatatggccttgcagcagtttcaatttg 615 ||||||| ||||| |||||||| || ||||||||||||||||| Sbjct: 83106 caaatttaatgaaggcatatggtctagcagcagtttcaatttg 83148 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 313 cacaatggccacaggggcatacttccgaattaaggcctg 351 ||||||||| |||||||| |||| |||||||||||||| Sbjct: 81249 cacaatggcaacaggggcccactttcgaattaaggcctg 81287
>emb|BX818320.1|CNS0AB2F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL72ZE07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1000 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 542 tacagtttcctggttttctgtatgaatgtatcaaatttgatgaaagcatatggccttgca 601 ||||||||| |||||||||||||||||||||||||||| || || ||||| |||| ||| Sbjct: 503 tacagtttcttggttttctgtatgaatgtatcaaatttaataaaggcataaggccgagca 444 Query: 602 gcagtttcaat 612 || |||||||| Sbjct: 443 gctgtttcaat 433
>gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence Length = 123386 Score = 63.9 bits (32), Expect = 6e-07 Identities = 113/140 (80%) Strand = Plus / Plus Query: 434 ttttcacccacaccaagaacttcttgaacattgcgagtcataatctggtgcacctcgtag 493 |||||||| ||||| | |||||||| ||||| || ||||| || || || ||||| ||| Sbjct: 102250 ttttcaccaacacctaagacttcttgcacattccgggtcattatttgatgaacctcatag 102309 Query: 494 agctcatcattcaacttggcaaggttcctttgggttctggtatccaaatacagtttcctg 553 || ||||||||||||||||| | ||| | ||| || | || || ||||||||| || Sbjct: 102310 agttcatcattcaacttggcgatgtttcgttgcgtacgagtgtcttggtacagtttcttg 102369 Query: 554 gttttctgtatgaatgtatc 573 |||||||||||||||||||| Sbjct: 102370 gttttctgtatgaatgtatc 102389
>gb|AC099753.2| Homo sapiens chromosome 3 clone RP11-466A13, complete sequence Length = 171696 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/37 (91%), Gaps = 2/37 (5%) Strand = Plus / Minus Query: 544 cagtttcctggtttt--ctgtatgaatgtatcaaatt 578 ||||||||| ||||| |||||||||||||||||||| Sbjct: 44065 cagtttccttgttttgactgtatgaatgtatcaaatt 44029
>gb|AC093141.2| Felis catus clone RP86-512F4, complete sequence Length = 119353 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 tttggggagagcataagccgg 157 ||||||||||||||||||||| Sbjct: 68066 tttggggagagcataagccgg 68046
>gb|AC109441.3| Homo sapiens chromosome 5 clone CTC-269P20, complete sequence Length = 89908 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 542 tacagtttcctggttttctgt 562 ||||||||||||||||||||| Sbjct: 53604 tacagtttcctggttttctgt 53584
>gb|AC010584.5| Homo sapiens chromosome 5 clone CTC-218H9, complete sequence Length = 113216 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 542 tacagtttcctggttttctgt 562 ||||||||||||||||||||| Sbjct: 1747 tacagtttcctggttttctgt 1767
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 ttgcagcagtttcaatttggc 617 ||||||||||||||||||||| Sbjct: 102463 ttgcagcagtttcaatttggc 102443
>gb|AY742460.1| Dermochelys coriacea RNA fingerprint fragment 35 (R35) gene, intron 1 Length = 943 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 560 tgtatgaatgtatcaaatttgatgaaagc 588 |||||||||||||||| | |||||||||| Sbjct: 126 tgtatgaatgtatcaattctgatgaaagc 98
>gb|AC147638.2| Mus musculus BAC clone RP23-181L5 from chromosome 7, complete sequence Length = 196114 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ctgtttgctcctcttgtttg 140 |||||||||||||||||||| Sbjct: 125652 ctgtttgctcctcttgtttg 125633
>gb|AC145330.19| Medicago truncatula clone mth2-17l1, complete sequence Length = 136161 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 ccttgcagcagtttcaattt 614 |||||||||||||||||||| Sbjct: 6256 ccttgcagcagtttcaattt 6275
>gb|AC149307.17| Medicago truncatula clone mth2-91a15, complete sequence Length = 136553 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 ttcctggttttctgtatgaa 567 |||||||||||||||||||| Sbjct: 1215 ttcctggttttctgtatgaa 1196
>emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on chromosome 9 Contains the 5' end of the NTRK2 gene for Neurotrophic tyrosine kinase, receptor, type 2 (TRKB) and a CpG island, complete sequence Length = 182914 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ctatcccaatcacaatggcc 322 |||||||||||||||||||| Sbjct: 73138 ctatcccaatcacaatggcc 73119
>emb|CR378674.1| Photobacterium profundum SS9; segment 12/12 Length = 251097 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 agctgtagaagcatctgttg 217 |||||||||||||||||||| Sbjct: 33371 agctgtagaagcatctgttg 33352
>gb|AC151830.3| Mus musculus BAC clone RP24-76I23 from chromosome 7, complete sequence Length = 212931 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ctgtttgctcctcttgtttg 140 |||||||||||||||||||| Sbjct: 79030 ctgtttgctcctcttgtttg 79011
>gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosome ul, complete sequence Length = 191648 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 atatggccttgcagcagttt 608 |||||||||||||||||||| Sbjct: 101804 atatggccttgcagcagttt 101785
>gb|AC097652.2| Homo sapiens BAC clone RP11-138B4 from 4, complete sequence Length = 114950 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 ttctggtatccaaatacagt 547 |||||||||||||||||||| Sbjct: 55910 ttctggtatccaaatacagt 55891
>gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromosome ul, complete sequence Length = 230767 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 atatggccttgcagcagttt 608 |||||||||||||||||||| Sbjct: 54570 atatggccttgcagcagttt 54551
>gb|AF199142.1|AF199142 Nototriton lignicola USNM 497550 cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product Length = 385 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 actaatagtaggagtactac 108 |||||||||||||||||||| Sbjct: 351 actaatagtaggagtactac 332
>gb|AF199141.1|AF199141 Nototriton lignicola USNM 497540 cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product Length = 385 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 actaatagtaggagtactac 108 |||||||||||||||||||| Sbjct: 351 actaatagtaggagtactac 332
>emb|AL512360.2|CNS07EF9 Human chromosome 14 DNA sequence BAC R-737F10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192972 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 ctgtatgaatgtatcaaatt 578 |||||||||||||||||||| Sbjct: 143034 ctgtatgaatgtatcaaatt 143053
>emb|BX005050.6| Zebrafish DNA sequence from clone CH211-11A11, complete sequence Length = 166695 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 556 tttctgtatgaatgtatcaaattt 579 ||||||||||| |||||||||||| Sbjct: 144041 tttctgtatgattgtatcaaattt 144064
>emb|AL929335.9| Zebrafish DNA sequence from clone CH211-9D9, complete sequence Length = 173236 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 555 ttttctgtatgaatgtatcaaatt 578 |||| ||||||||||||||||||| Sbjct: 142238 ttttatgtatgaatgtatcaaatt 142261
>gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, complete sequence Length = 230420 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 accaagaacttcttgaacat 464 |||||||||||||||||||| Sbjct: 98583 accaagaacttcttgaacat 98602 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,926,132 Number of Sequences: 3902068 Number of extensions: 4926132 Number of successful extensions: 91080 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90767 Number of HSP's gapped (non-prelim): 311 length of query: 630 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 607 effective length of database: 17,143,297,704 effective search space: 10405981706328 effective search space used: 10405981706328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
