>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score =  410 bits (207), Expect = e-111
 Identities = 308/340 (90%), Gaps = 8/340 (2%)
 Strand = Plus / Plus

                                                                        
Query: 14   ataacactttgagatctttaaaaaa-tcc-taatttaccatgattctcccctcagnagca 71
            ||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |  ||||
Sbjct: 8862 ataacactttgagatctttaaaaaaatccataatttaccatgattcttcccttaagagca 8921

                                                                        
Query: 72   atagtaa---gatataaaaatacatagcaaaaaccatgagctattacagacaattcccaa 128
            ||| |||   |||| |||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 8922 ataataataagataaaaaaatacatagcaaaaaccatgagctattacagacaactcc-aa 8980

                                                                        
Query: 129  caacaaatcaagccaacccaagtttgacaactgatcccacaaacacactgacaatgcaca 188
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 8981 caacaaatcaagccaacccaagtttgacaactgatctcacaaacacactgacaatacaca 9040

                                                                        
Query: 189  aacatagata--gtgtacttgcacttgcaccatggagccgccacgtatataggtggcgta 246
            ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9041 aacatagatatagtgtacttgcacttgcaccatggagccgccacgtatataggtggcata 9100

                                                                        
Query: 247  tcccaagagtacccacgtcacgtctggnnnnnnncatagcttgcaaatncgcaatncatt 306
            |||||||||||| ||||||||||||||       |||||||||||||| |||||| ||||
Sbjct: 9101 tcccaagagtactcacgtcacgtctggaaaaaaacatagcttgcaaatacgcaatacatt 9160

                                                    
Query: 307  tntagaagaatgaaccaaacataancgaagactagatgat 346
            | |||||||||||||||||||||| |  ||||||||||||
Sbjct: 9161 tctagaagaatgaaccaaacataacccgagactagatgat 9200

>gb|AY145451.1| Hordeum vulgare actin mRNA, complete cds
          Length = 1421

 Score =  400 bits (202), Expect = e-108
 Identities = 224/235 (95%)
 Strand = Plus / Minus

                                                                        
Query: 112  ttacagacaattcccaacaacaaatcaagccaacccaagtttgacaactgatcccacaaa 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1413 ttacagacaattcccaacaacaaatcaagccaacccaagtttgacaactgatcccacaaa 1354

                                                                        
Query: 172  cacactgacaatgcacaaacatagatagtgtacttgcacttgcaccatggagccgccacg 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1353 cacactgacaatgcacaaacatagatagtgtacttgcacttgcaccatggagccgccacg 1294

                                                                        
Query: 232  tatataggtggcgtatcccaagagtacccacgtcacgtctggnnnnnnncatagcttgca 291
            ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 1293 tatataggtggcgtatcccaagagtacccacgtcacgtctggaaaaaaacatagcttgca 1234

                                                                   
Query: 292  aatncgcaatncatttntagaagaatgaaccaaacataancgaagactagatgat 346
            ||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 1233 aatacgcaatacatttctagaagaatgaaccaaacataaccgaagactagatgat 1179

>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence
          Length = 187012

 Score =  377 bits (190), Expect = e-101
 Identities = 306/342 (89%), Gaps = 10/342 (2%)
 Strand = Plus / Plus

                                                                         
Query: 14    ataacactttgagatctttaaaaaa-tcc-taatttaccatgattctcccctcagnagca 71
             ||||||||||||||||||||||||| ||| |||| |||||||||||| |||| |  ||||
Sbjct: 17470 ataacactttgagatctttaaaaaaatccataatataccatgattcttcccttaagagca 17529

                                                                         
Query: 72    atagtaa---gatataaaaatacatagcaaaaaccatgagctattacagacaattcccaa 128
             ||| |||   |||| |||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 17530 ataataataagataaaaaaatacatagcaaaaaccatgagctattacagacaactcc-aa 17588

                                                                         
Query: 129   caacaaatcaagccaacccaagtttgacaactgatcccacaaacacactg--acaatgca 186
             |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||| ||
Sbjct: 17589 caacaaatcaagccaacccaagtttgacaactgatctcacaaacacactgtgacaataca 17648

                                                                         
Query: 187   caaacatagata--gtgtacttgcacttgcaccatggagccgccacgtatataggtggcg 244
             ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 17649 caaacatagatatagtgtacttgcacttgcaccatggagccgccacgtatataggtagca 17708

                                                                         
Query: 245   tatcccaagagtacccacgtcacgtctggnnnnnnncatagcttgcaaatncgcaatnca 304
             |||||||||||||| ||||||||||||||       |||||||||||||| |||||| ||
Sbjct: 17709 tatcccaagagtactcacgtcacgtctggaaaaaaacatagcttgcaaatacgcaataca 17768

                                                       
Query: 305   tttntagaagaatgaaccaaacataancgaagactagatgat 346
             ||| |||||||||||||||||||||| |  ||||||||||||
Sbjct: 17769 tttctagaagaatgaaccaaacataacccgagactagatgat 17810

>emb|BX546478.12| Zebrafish DNA sequence from clone DKEYP-115B3 in linkage group 17,
             complete sequence
          Length = 131670

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 74    agtaagatataaaaatacatagca 97
             ||||||||||||||||||||||||
Sbjct: 61020 agtaagatataaaaatacatagca 61043

>gb|AC010480.7| Homo sapiens chromosome 5 clone CTD-2315M5, complete sequence
          Length = 99995

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    atataaaaatacatagcaaaa 100
             |||||||||||||||||||||
Sbjct: 43606 atataaaaatacatagcaaaa 43586

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 28      tctttaaaaaatcctaatttaccat 52
               |||||||||||||| ||||||||||
Sbjct: 1591376 tctttaaaaaatccaaatttaccat 1591400

>emb|AL389914.3|CNS06C7J Human chromosome 14 DNA sequence BAC C-2307P3 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 97160

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 81    tataaaaatacatagcaaaaa 101
             |||||||||||||||||||||
Sbjct: 26592 tataaaaatacatagcaaaaa 26572

>gb|AF110520.1|MMHC425O18 Mus musculus major histocompatibility complex region NG27, NG28, RPS28,
              NADH oxidoreductase, NG29, KIFC1, Fas-binding protein,
              BING1, tapasin, RalGDS-like, KE2, BING4, beta
              1,3-galactosyl transferase, and RPS18 genes, complete cds;
              Sacm21 gene, partial cds; and unknown gene
          Length = 213245

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     ctttaaaaaatcctaattta 48
              ||||||||||||||||||||
Sbjct: 145179 ctttaaaaaatcctaattta 145160

>gb|AC160990.4| Mus musculus BAC clone RP23-172K2 from chromosome 12, complete sequence
          Length = 213387

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 109   ctattacagacaattcccaacaac 132
             ||||||||||| ||||||||||||
Sbjct: 98725 ctattacagactattcccaacaac 98702

>gb|AC011325.17| Homo sapiens 3 BAC RP11-17P4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 148095

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     aagatataaaaatacatagc 96
              ||||||||||||||||||||
Sbjct: 134049 aagatataaaaatacatagc 134030

>gb|AC137844.8| Mus musculus, clone RP23-415L22, complete sequence
          Length = 188189

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 126    caacaacaaatcaagccaacccaa 149
              ||||||||||||||||||| ||||
Sbjct: 118173 caacaacaaatcaagccaaaccaa 118150

>emb|AL445564.1|MPULM02 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3
          Length = 321250

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tctttaaaaaatcctaattt 47
             ||||||||||||||||||||
Sbjct: 29731 tctttaaaaaatcctaattt 29712

>gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, complete sequence
          Length = 199527

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 122   ttcccaacaacaaatcaagccaacccaagttt 153
             |||||||||| ||||| || ||||||||||||
Sbjct: 65709 ttcccaacaataaatcgagtcaacccaagttt 65740

>gb|AC008709.6| Homo sapiens chromosome 5 clone CTB-78O4, complete sequence
          Length = 114421

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    atataaaaatacatagcaaa 99
             ||||||||||||||||||||
Sbjct: 91228 atataaaaatacatagcaaa 91247

>gb|AC010275.6| Homo sapiens chromosome 5 clone CTC-499J9, complete sequence
          Length = 197255

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    atataaaaatacatagcaaa 99
             ||||||||||||||||||||
Sbjct: 27046 atataaaaatacatagcaaa 27027

>emb|BX294379.5| Zebrafish DNA sequence from clone DKEY-7A20 in linkage group 1,
             complete sequence
          Length = 214290

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 303   catttntagaagaatgaaccaaa 325
             ||||| |||||||||||||||||
Sbjct: 78966 catttatagaagaatgaaccaaa 78944

>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
              locus, strain C57BL/6
          Length = 2500000

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 109    ctattacagacaattcccaacaac 132
              ||||||||||| ||||||||||||
Sbjct: 120075 ctattacagactattcccaacaac 120052

>emb|CT030732.13| Mouse DNA sequence from clone RP23-27D5 on chromosome 17, complete
              sequence
          Length = 220163

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     ctttaaaaaatcctaattta 48
              ||||||||||||||||||||
Sbjct: 207746 ctttaaaaaatcctaattta 207727

>emb|AL672009.19| Zebrafish DNA sequence from clone BUSM1-137H13 in linkage group 1,
             complete sequence
          Length = 67888

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 303   catttntagaagaatgaaccaaa 325
             ||||| |||||||||||||||||
Sbjct: 50018 catttatagaagaatgaaccaaa 49996


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,323,557
Number of Sequences: 3902068
Number of extensions: 3323557
Number of successful extensions: 67364
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67270
Number of HSP's gapped (non-prelim): 82
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)